Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005400.1

Orthogroup ID

OG0019508

Physical Location & Seq

Genomic Coordinates Reverse (-)

60757 .. 62018

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005400.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgttattcaatcgggttctagacttgattcatggacttctattgctgaatgcttcatgggattgcaaagttttaaggtgtatcatgcggctcggtttcggtggtcagaaattctccactctagcggagcagcaaccactggtgctcaagttcgataatagcgcccttctcaagggcaacatcaccgtcaatctattatggtatggccactttaccccaatccagcgctccataattgtagacttcatccagtccctcagttcccagcgtcgtgccccactccttccctcaacttcttcctggtggaaaaccaccaagaaatacaagatcggatcttccaccgtcccctccacgagtccctacgacatcttctgcggcgtcccctacactgccctctacaccgaacccagaagaccagaaaagccgtcgtggacgcggcaagaaaaagcccagaaaccgtcagataatttcagcatcgattctcgcaccatggatgacggaagaccaaaacaattccagacggacgtcggcgacgtcgagatggctcgaacactaaatcatccccaaccccaccggccgacactcatcgtcttctccccagatctgatcatcttctctctaaacctcgatttcgagtttgaatcggagctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

217

Amino Acids

24.85

Weight (kDa)

8.99

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019508)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000363.1_g000005 Rmu_sc0004045.1_g000011 Rmu_sc0005400.1_g000006 Rmu_sc0006415.1_g000003
rosa_rugosa	Rorug01G0377500 Rorug05G0155000
rosa_samantha	Rh1AG059100 Rh6AG156700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	528, 537
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	1 cut(s)	436
AciI	CCGC	4 cut(s)	88, 125, 375, 436
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	2 cut(s)	205, 575
AcsI	RAATTY	1 cut(s)	110
AcyI	GRCGYC	3 cut(s)	378, 525, 534
AfeI	AGCGCT	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	10, 641
AjnI	CCWGG	1 cut(s)	299
AluBI	AGCT	1 cut(s)	649
AluI	AGCT	1 cut(s)	649
Alw21I	GWGCWC	2 cut(s)	147, 651
AlwI	GGATC	1 cut(s)	340
Aor51HI	AGCGCT	1 cut(s)	227
AoxI	GGCC	2 cut(s)	205, 575
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	110
AspLEI	GCGC	2 cut(s)	164, 228
AsuHPI	GGTGA	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	651
BauI	CACGAG	1 cut(s)	352
BbsI	GAAGAC	3 cut(s)	418, 508, 583
Bbv12I	GWGCWC	2 cut(s)	147, 651
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	535
BceAI	ACGGC	1 cut(s)	409
BciT130I	CCWGG	1 cut(s)	301
BclI	TGATCA	1 cut(s)	606
BfaI	CTAG	2 cut(s)	20, 122
BfoI	RGCGCY	2 cut(s)	165, 229
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	4 cut(s)	89, 131, 376, 437
BlsI	GCNGC	4 cut(s)	90, 132, 377, 438
Bme1390I	CCNGG	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	483
BoxI	GACNNNNGTC	1 cut(s)	524
BpiI	GAAGAC	3 cut(s)	418, 508, 583
BpuEI	CTTGAG	2 cut(s)	131, 155
Bsa29I	ATCGAT	1 cut(s)	477
BsaHI	GRCGYC	3 cut(s)	378, 525, 534
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	573
Bse1I	ACTGG	2 cut(s)	144, 250
BseBI	CCWGG	1 cut(s)	301
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	3 cut(s)	246, 499, 559
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	2 cut(s)	144, 250
BseSI	GKGCMC	1 cut(s)	277
BseX3I	CGGCCG	1 cut(s)	575
BseXI	GCAGC	1 cut(s)	142
BseYI	CCCAGC	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	436
Bsh1285I	CGRYCG	1 cut(s)	578
BshFI	GGCC	2 cut(s)	207, 577
BshVI	ATCGAT	1 cut(s)	477
BsiEI	CGRYCG	1 cut(s)	578
BsiHKAI	GWGCWC	2 cut(s)	147, 651
BsiSI	CCGG	1 cut(s)	574
BslFI	GGGAC	4 cut(s)	238, 329, 342, 365
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmFI	GGGAC	4 cut(s)	238, 329, 342, 365
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	207, 577
Bsp1286I	GDGCHC	3 cut(s)	147, 277, 651
Bsp143I	GATC	4 cut(s)	327, 332, 601, 606
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	4 cut(s)	88, 125, 375, 436
BspANI	GGCC	2 cut(s)	207, 577
BspCNI	CTCAG	1 cut(s)	270
BspDI	ATCGAT	1 cut(s)	477
BspFNI	CGCG	1 cut(s)	436
BspPI	GGATC	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	144, 250
BssAI	RCCGGY	1 cut(s)	573
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	4 cut(s)	327, 332, 601, 606
BssNI	GRCGYC	3 cut(s)	378, 525, 534
BssSI	CACGAG	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	187, 343, 459
BstACI	GRCGYC	3 cut(s)	378, 525, 534
BstDEI	CTNAG	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	489
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	3 cut(s)	246, 499, 559
BstFNI	CGCG	1 cut(s)	436
BstH2I	RGCGCY	2 cut(s)	165, 229
BstHHI	GCGC	2 cut(s)	164, 228
BstKTI	GATC	4 cut(s)	330, 335, 604, 609
BstMBI	GATC	4 cut(s)	327, 332, 601, 606
BstMCI	CGRYCG	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	301
BstPAI	GACNNNNGTC	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	299
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	3 cut(s)	418, 508, 583
BstX2I	RGATCY	2 cut(s)	332, 601
BstYI	RGATCY	2 cut(s)	332, 601
BstZI	CGGCCG	1 cut(s)	575
Bsu15I	ATCGAT	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	207, 577
BsuTUI	ATCGAT	1 cut(s)	477
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	3 cut(s)	246, 499, 559
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	137, 387
CfoI	GCGC	2 cut(s)	164, 228
Cfr10I	RCCGGY	1 cut(s)	573
ClaI	ATCGAT	1 cut(s)	477
CseI	GACGC	3 cut(s)	257, 367, 442
CviAII	CATG	4 cut(s)	32, 57, 85, 490
CviJI	RGCY	7 cut(s)	91, 207, 424, 449, 545, 577, 649
CviKI_1	RGCY	7 cut(s)	91, 207, 424, 449, 545, 577, 649
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	4 cut(s)	329, 334, 603, 608
DpnII	GATC	4 cut(s)	327, 332, 601, 606
EaeI	YGGCCR	2 cut(s)	205, 575
EagI	CGGCCG	1 cut(s)	575
Ecl136II	GAGCTC	1 cut(s)	649
EclXI	CGGCCG	1 cut(s)	575
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	651
Eco47III	AGCGCT	1 cut(s)	227
Eco52I	CGGCCG	1 cut(s)	575
Eco53kI	GAGCTC	1 cut(s)	649
EcoICRI	GAGCTC	1 cut(s)	649
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	4 cut(s)	35, 60, 88, 493
FaiI	YATR	7 cut(s)	33, 58, 86, 199, 204, 233, 491
FaqI	GGGAC	4 cut(s)	238, 329, 342, 365
FatI	CATG	4 cut(s)	31, 56, 84, 489
FbaI	TGATCA	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	4 cut(s)	89, 131, 376, 437
FokI	GGATG	3 cut(s)	233, 506, 546
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	4 cut(s)	89, 131, 376, 437
FspBI	CTAG	2 cut(s)	20, 122
GlaI	GCGC	2 cut(s)	163, 227
GluI	GCNGC	4 cut(s)	89, 131, 376, 437
GsaI	CCCAGC	1 cut(s)	268
HaeII	RGCGCY	2 cut(s)	165, 229
HaeIII	GGCC	2 cut(s)	207, 577
HapII	CCGG	1 cut(s)	574
HgaI	GACGC	3 cut(s)	257, 367, 442
HhaI	GCGC	2 cut(s)	164, 228
Hin1I	GRCGYC	3 cut(s)	378, 525, 534
Hin1II	CATG	4 cut(s)	35, 60, 88, 493
Hin6I	GCGC	2 cut(s)	162, 226
HinP1I	GCGC	2 cut(s)	162, 226
HinfI	GANTC	4 cut(s)	28, 355, 479, 641
HpaII	CCGG	1 cut(s)	574
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	241, 432
Hpy188I	TCNGA	5 cut(s)	108, 332, 463, 606, 646
Hpy188III	TCNNGA	3 cut(s)	20, 517, 538
Hpy8I	GTNNAC	2 cut(s)	241, 432
Hpy99I	CGWCG	5 cut(s)	273, 430, 530, 536, 539
HpyAV	CCTTC	2 cut(s)	176, 293
HpyCH4III	ACNGT	3 cut(s)	187, 343, 459
HpyCH4IV	ACGT	2 cut(s)	525, 534
HpyCH4V	TGCA	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	2 cut(s)	525, 534
Hsp92I	GRCGYC	3 cut(s)	378, 525, 534
Hsp92II	CATG	4 cut(s)	35, 60, 88, 493
HspAI	GCGC	2 cut(s)	162, 226
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	4 cut(s)	327, 332, 601, 606
LmnI	GCTCC	3 cut(s)	127, 233, 646
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	2 cut(s)	20, 122
MaeII	ACGT	2 cut(s)	525, 534
MalI	GATC	4 cut(s)	329, 334, 603, 608
MboI	GATC	4 cut(s)	327, 332, 601, 606
MboII	GAAGA	7 cut(s)	288, 327, 361, 423, 513, 583, 604
MflI	RGATCY	2 cut(s)	332, 601
MhlI	GDGCHC	3 cut(s)	147, 277, 651
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	4 cut(s)	110, 234, 466, 512
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	5 cut(s)	266, 298, 358, 404, 635
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	207
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	1 cut(s)	301
Mva1269I	GAATGC	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	301
MvnI	CGCG	1 cut(s)	436
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	4 cut(s)	327, 332, 601, 606
NlaIII	CATG	4 cut(s)	35, 60, 88, 493
PcsI	WCGNNNNNNNCGW	2 cut(s)	531, 534
PctI	GAATGC	1 cut(s)	55
PfeI	GAWTC	3 cut(s)	28, 479, 641
PkrI	GCNGC	4 cut(s)	90, 132, 377, 438
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
PshAI	GACNNNNGTC	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	299
PsuI	RGATCY	2 cut(s)	332, 601
SacI	GAGCTC	1 cut(s)	651
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	4 cut(s)	89, 131, 376, 437
Sau3AI	GATC	4 cut(s)	327, 332, 601, 606
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	3 cut(s)	147, 277, 651
SetI	ASST	5 cut(s)	80, 528, 537, 627, 651
SfaNI	GCATC	1 cut(s)	483
SmlI	CTYRAG	2 cut(s)	146, 170
SmoI	CTYRAG	2 cut(s)	146, 170
Sse9I	AATT	4 cut(s)	110, 234, 466, 512
SsiI	CCGC	4 cut(s)	88, 125, 375, 436
SspMI	CTAG	2 cut(s)	20, 122
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	3 cut(s)	187, 343, 459
TaiI	ACGT	2 cut(s)	528, 537
TaqI	TCGA	6 cut(s)	153, 477, 537, 547, 627, 633
TasI	AATT	4 cut(s)	110, 234, 466, 512
TauI	GCSGC	3 cut(s)	91, 378, 439
TfiI	GAWTC	3 cut(s)	28, 479, 641
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	2 cut(s)	144, 394
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	20, 45, 235
TspGWI	ACGGA	2 cut(s)	513, 536
TspRI	CASTG	2 cut(s)	144, 394
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	110
XbaI	TCTAGA	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	2 cut(s)	20, 122
ZraI	GACGTC	2 cut(s)	526, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.