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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g20250 |
| malus_domestica | MD12G1039600.v1.1 |
| prunus_persica | Prupe.7G095600_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0475841 |
| rosa_laevigata | RLG00000023809 |
| rosa_multiflora | Rmu_sc0000539.1_g000089 Rmu_sc0011491.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00405800 |
| rosa_rugosa | Rorug03G0151700 |
| rosa_samantha | Rh3AG201500 Rh3BG231800 Rh3CG226500 Rh3DG227100 |
| rosa_wichuraiana | Rw3G018350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 72 |
| AccB1I | GGYRCC | 1 cut(s) | 452 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 425, 943 |
| AccBSI | CCGCTC | 1 cut(s) | 143 |
| AccI | GTMKAC | 2 cut(s) | 172, 1074 |
| AccIII | TCCGGA | 2 cut(s) | 446, 1414 |
| AclWI | GGATC | 5 cut(s) | 941, 954, 995, 1093, 1398 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 83 |
| AcuI | CTGAAG | 3 cut(s) | 164, 284, 1371 |
| AcyI | GRCGYC | 1 cut(s) | 69 |
| AdeI | CACNNNGTG | 1 cut(s) | 1399 |
| AfaI | GTAC | 1 cut(s) | 1457 |
| AgeI | ACCGGT | 2 cut(s) | 206, 455 |
| AgsI | TTSAA | 5 cut(s) | 64, 241, 560, 1262, 1331 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1233 |
| AhlI | ACTAGT | 1 cut(s) | 1186 |
| AjnI | CCWGG | 3 cut(s) | 497, 523, 1064 |
| Alw21I | GWGCWC | 3 cut(s) | 264, 337, 1194 |
| Alw26I | GTCTC | 1 cut(s) | 842 |
| AlwI | GGATC | 5 cut(s) | 941, 954, 995, 1093, 1398 |
| Ama87I | CYCGRG | 2 cut(s) | 336, 471 |
| Aor13HI | TCCGGA | 2 cut(s) | 446, 1414 |
| AoxI | GGCC | 3 cut(s) | 3, 415, 1062 |
| ApeKI | GCWGC | 5 cut(s) | 707, 749, 771, 834, 856 |
| ApoI | RAATTY | 1 cut(s) | 83 |
| AsiGI | ACCGGT | 2 cut(s) | 206, 455 |
| AspA2I | CCTAGG | 1 cut(s) | 1195 |
| AspS9I | GGNCC | 1 cut(s) | 416 |
| AsuC2I | CCSGG | 5 cut(s) | 253, 290, 472, 473, 1267 |
| AsuHPI | GGTGA | 6 cut(s) | 260, 320, 458, 599, 1148, 1444 |
| AvaI | CYCGRG | 2 cut(s) | 336, 471 |
| AvrII | CCTAGG | 1 cut(s) | 1195 |
| BamHI | GGATCC | 1 cut(s) | 946 |
| BanI | GGYRCC | 1 cut(s) | 452 |
| BanII | GRGCYC | 3 cut(s) | 264, 337, 685 |
| BbsI | GAAGAC | 1 cut(s) | 1239 |
| Bbv12I | GWGCWC | 3 cut(s) | 264, 337, 1194 |
| BbvI | GCAGC | 5 cut(s) | 719, 736, 758, 821, 843 |
| BccI | CCATC | 4 cut(s) | 305, 653, 1412, 1423 |
| BceAI | ACGGC | 1 cut(s) | 259 |
| BciT130I | CCWGG | 3 cut(s) | 499, 525, 1066 |
| BcnI | CCSGG | 5 cut(s) | 253, 290, 472, 473, 1267 |
| BcoDI | GTCTC | 1 cut(s) | 842 |
| BcuI | ACTAGT | 1 cut(s) | 1186 |
| BfaI | CTAG | 6 cut(s) | 330, 678, 1187, 1196, 1317, 1465 |
| BisI | GCNGC | 8 cut(s) | 141, 708, 725, 750, 772, 797, 835, 857 |
| BlnI | CCTAGG | 1 cut(s) | 1195 |
| BlsI | GCNGC | 8 cut(s) | 142, 709, 726, 751, 773, 798, 836, 858 |
| BmcAI | AGTACT | 1 cut(s) | 1457 |
| Bme1390I | CCNGG | 8 cut(s) | 253, 290, 472, 473, 499, 525, 1066, 1267 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1233 |
| BmeT110I | CYCGRG | 2 cut(s) | 336, 471 |
| BmgT120I | GGNCC | 1 cut(s) | 416 |
| BmiI | GGNNCC | 6 cut(s) | 201, 327, 454, 631, 684, 948 |
| BmrFI | CCNGG | 8 cut(s) | 253, 290, 472, 473, 499, 525, 1066, 1267 |
| BmrI | ACTGGG | 1 cut(s) | 1227 |
| BmsI | GCATC | 3 cut(s) | 361, 613, 886 |
| BmuI | ACTGGG | 1 cut(s) | 1227 |
| BpiI | GAAGAC | 1 cut(s) | 1239 |
| BpuEI | CTTGAG | 1 cut(s) | 1116 |
| BpuMI | CCSGG | 5 cut(s) | 253, 290, 472, 473, 1267 |
| Bsa29I | ATCGAT | 1 cut(s) | 673 |
| BsaHI | GRCGYC | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 5 cut(s) | 114, 470, 471, 524, 1195 |
| BsaWI | WCCGGW | 4 cut(s) | 206, 446, 455, 1414 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 233, 263, 1176, 1206 |
| Bse118I | RCCGGY | 4 cut(s) | 196, 206, 455, 782 |
| Bse1I | ACTGG | 3 cut(s) | 1177, 1233, 1375 |
| Bse3DI | GCAATG | 1 cut(s) | 1042 |
| BseAI | TCCGGA | 2 cut(s) | 446, 1414 |
| BseBI | CCWGG | 3 cut(s) | 499, 525, 1066 |
| BseCI | ATCGAT | 1 cut(s) | 673 |
| BseDI | CCNNGG | 5 cut(s) | 114, 470, 471, 524, 1195 |
| BseGI | GGATG | 4 cut(s) | 645, 1024, 1155, 1423 |
| BseMI | GCAATG | 1 cut(s) | 1042 |
| BseMII | CTCAG | 1 cut(s) | 249 |
| BseNI | ACTGG | 3 cut(s) | 1177, 1233, 1375 |
| BseRI | GAGGAG | 3 cut(s) | 361, 1275, 1278 |
| BseXI | GCAGC | 5 cut(s) | 719, 736, 758, 821, 843 |
| Bsh1285I | CGRYCG | 1 cut(s) | 207 |
| BshFI | GGCC | 3 cut(s) | 5, 417, 1064 |
| BshNI | GGYRCC | 1 cut(s) | 452 |
| BshTI | ACCGGT | 2 cut(s) | 206, 455 |
| BshVI | ATCGAT | 1 cut(s) | 673 |
| BsiEI | CGRYCG | 1 cut(s) | 207 |
| BsiHKAI | GWGCWC | 3 cut(s) | 264, 337, 1194 |
| BsiHKCI | CYCGRG | 2 cut(s) | 336, 471 |
| BslFI | GGGAC | 3 cut(s) | 59, 268, 713 |
| BsmAI | GTCTC | 1 cut(s) | 842 |
| BsmBI | CGTCTC | 1 cut(s) | 842 |
| BsmFI | GGGAC | 3 cut(s) | 59, 268, 713 |
| BsmI | GAATGC | 1 cut(s) | 555 |
| BsnI | GGCC | 3 cut(s) | 5, 417, 1064 |
| BsoBI | CYCGRG | 2 cut(s) | 336, 471 |
| Bsp1286I | GDGCHC | 4 cut(s) | 264, 337, 685, 1194 |
| Bsp13I | TCCGGA | 2 cut(s) | 446, 1414 |
| Bsp143I | GATC | 7 cut(s) | 674, 946, 987, 1085, 1138, 1222, 1390 |
| Bsp19I | CCATGG | 1 cut(s) | 114 |
| BspANI | GGCC | 3 cut(s) | 5, 417, 1064 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BspDI | ATCGAT | 1 cut(s) | 673 |
| BspEI | TCCGGA | 2 cut(s) | 446, 1414 |
| BspLI | GGNNCC | 6 cut(s) | 201, 327, 454, 631, 684, 948 |
| BspPI | GGATC | 5 cut(s) | 941, 954, 995, 1093, 1398 |
| BspQI | GCTCTTC | 1 cut(s) | 594 |
| BspT107I | GGYRCC | 1 cut(s) | 452 |
| BsrBI | CCGCTC | 1 cut(s) | 143 |
| BsrDI | GCAATG | 1 cut(s) | 1042 |
| BsrFI | RCCGGY | 4 cut(s) | 196, 206, 455, 782 |
| BsrI | ACTGG | 3 cut(s) | 1177, 1233, 1375 |
| BssAI | RCCGGY | 4 cut(s) | 196, 206, 455, 782 |
| BssECI | CCNNGG | 5 cut(s) | 114, 470, 471, 524, 1195 |
| BssMI | GATC | 7 cut(s) | 674, 946, 987, 1085, 1138, 1222, 1390 |
| BssNAI | GTATAC | 1 cut(s) | 1075 |
| BssNI | GRCGYC | 1 cut(s) | 69 |
| BssT1I | CCWWGG | 2 cut(s) | 114, 1195 |
| Bst1107I | GTATAC | 1 cut(s) | 1075 |
| Bst2UI | CCWGG | 3 cut(s) | 499, 525, 1066 |
| Bst4CI | ACNGT | 1 cut(s) | 629 |
| Bst6I | CTCTTC | 2 cut(s) | 594, 1358 |
| BstACI | GRCGYC | 1 cut(s) | 69 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1458 |
| BstC8I | GCNNGC | 2 cut(s) | 712, 844 |
| BstDEI | CTNAG | 3 cut(s) | 258, 921, 1295 |
| BstDSI | CCRYGG | 1 cut(s) | 114 |
| BstF5I | GGATG | 4 cut(s) | 645, 1024, 1155, 1423 |
| BstKTI | GATC | 7 cut(s) | 677, 949, 990, 1088, 1141, 1225, 1393 |
| BstMAI | GTCTC | 1 cut(s) | 842 |
| BstMBI | GATC | 7 cut(s) | 674, 946, 987, 1085, 1138, 1222, 1390 |
| BstMCI | CGRYCG | 1 cut(s) | 207 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 160, 174, 610, 758, 843, 865, 874, 1458 |
| BstNI | CCWGG | 3 cut(s) | 499, 525, 1066 |
| BstSCI | CCNGG | 8 cut(s) | 251, 288, 470, 471, 497, 523, 1064, 1265 |
| BstV1I | GCAGC | 5 cut(s) | 719, 736, 758, 821, 843 |
| BstV2I | GAAGAC | 1 cut(s) | 1239 |
| BstX2I | RGATCY | 2 cut(s) | 946, 987 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1172 |
| BstYI | RGATCY | 2 cut(s) | 946, 987 |
| BstZ17I | GTATAC | 1 cut(s) | 1075 |
| Bsu15I | ATCGAT | 1 cut(s) | 673 |
| BsuRI | GGCC | 3 cut(s) | 5, 417, 1064 |
| BsuTUI | ATCGAT | 1 cut(s) | 673 |
| BtgI | CCRYGG | 1 cut(s) | 114 |
| BtsCI | GGATG | 4 cut(s) | 645, 1024, 1155, 1423 |
| BtsI | GCAGTG | 1 cut(s) | 1348 |
| BtsIMutI | CAGTG | 2 cut(s) | 1170, 1348 |
| Cac8I | GCNNGC | 2 cut(s) | 712, 844 |
| Cfr10I | RCCGGY | 4 cut(s) | 196, 206, 455, 782 |
| Cfr13I | GGNCC | 1 cut(s) | 416 |
| Cfr9I | CCCGGG | 1 cut(s) | 471 |
| ClaI | ATCGAT | 1 cut(s) | 673 |
| CseI | GACGC | 2 cut(s) | 38, 152 |
| Csp6I | GTAC | 1 cut(s) | 1456 |
| CspAI | ACCGGT | 2 cut(s) | 206, 455 |
| CviAII | CATG | 3 cut(s) | 115, 943, 1279 |
| CviQI | GTAC | 1 cut(s) | 1456 |
| DdeI | CTNAG | 3 cut(s) | 258, 921, 1295 |
| DpnI | GATC | 7 cut(s) | 676, 948, 989, 1087, 1140, 1224, 1392 |
| DpnII | GATC | 7 cut(s) | 674, 946, 987, 1085, 1138, 1222, 1390 |
| DraIII | CACNNNGTG | 1 cut(s) | 1399 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1233 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 2 cut(s) | 594, 1358 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1233 |
| EarI | CTCTTC | 2 cut(s) | 594, 1358 |
| EciI | GGCGGA | 1 cut(s) | 729 |
| Ecl136II | GAGCTC | 2 cut(s) | 262, 335 |
| Eco130I | CCWWGG | 2 cut(s) | 114, 1195 |
| Eco24I | GRGCYC | 3 cut(s) | 264, 337, 685 |
| Eco53kI | GAGCTC | 2 cut(s) | 262, 335 |
| Eco57I | CTGAAG | 3 cut(s) | 164, 284, 1371 |
| Eco88I | CYCGRG | 2 cut(s) | 336, 471 |
| EcoICRI | GAGCTC | 2 cut(s) | 262, 335 |
| EcoRII | CCWGG | 3 cut(s) | 497, 523, 1064 |
| EcoT14I | CCWWGG | 2 cut(s) | 114, 1195 |
| EcoT38I | GRGCYC | 3 cut(s) | 264, 337, 685 |
| ErhI | CCWWGG | 2 cut(s) | 114, 1195 |
| Esp3I | CGTCTC | 1 cut(s) | 842 |
| FaeI | CATG | 3 cut(s) | 118, 946, 1282 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 914, 946, 1254, 1286 |
| FaqI | GGGAC | 3 cut(s) | 59, 268, 713 |
| FatI | CATG | 3 cut(s) | 114, 942, 1278 |
| FblI | GTMKAC | 2 cut(s) | 172, 1074 |
| Fnu4HI | GCNGC | 8 cut(s) | 141, 708, 725, 750, 772, 797, 835, 857 |
| FokI | GGATG | 4 cut(s) | 632, 1031, 1142, 1430 |
| FriOI | GRGCYC | 3 cut(s) | 264, 337, 685 |
| Fsp4HI | GCNGC | 8 cut(s) | 141, 708, 725, 750, 772, 797, 835, 857 |
| FspBI | CTAG | 6 cut(s) | 330, 678, 1187, 1196, 1317, 1465 |
| GluI | GCNGC | 8 cut(s) | 141, 708, 725, 750, 772, 797, 835, 857 |
| HaeIII | GGCC | 3 cut(s) | 5, 417, 1064 |
| HgaI | GACGC | 2 cut(s) | 38, 152 |
| Hin1I | GRCGYC | 1 cut(s) | 69 |
| Hin1II | CATG | 3 cut(s) | 118, 946, 1282 |
| HincII | GTYRAC | 1 cut(s) | 25 |
| HindII | GTYRAC | 1 cut(s) | 25 |
| HindIII | AAGCTT | 2 cut(s) | 923, 1109 |
| HinfI | GANTC | 7 cut(s) | 36, 100, 482, 754, 1129, 1244, 1411 |
| HphI | GGTGA | 6 cut(s) | 260, 320, 458, 599, 1148, 1444 |
| Hpy166II | GTNNAC | 3 cut(s) | 25, 173, 1075 |
| Hpy188III | TCNNGA | 6 cut(s) | 283, 323, 447, 620, 1089, 1415 |
| Hpy8I | GTNNAC | 3 cut(s) | 25, 173, 1075 |
| Hpy99I | CGWCG | 6 cut(s) | 32, 71, 74, 168, 691, 741 |
| HpyAV | CCTTC | 5 cut(s) | 188, 685, 735, 820, 864 |
| HpyCH4III | ACNGT | 1 cut(s) | 629 |
| HpyCH4IV | ACGT | 1 cut(s) | 69 |
| HpyCH4V | TGCA | 4 cut(s) | 774, 859, 964, 1452 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 160, 174, 610, 758, 843, 865, 874, 1458 |
| HpyF3I | CTNAG | 3 cut(s) | 258, 921, 1295 |
| HpySE526I | ACGT | 1 cut(s) | 69 |
| Hsp92I | GRCGYC | 1 cut(s) | 69 |
| Hsp92II | CATG | 3 cut(s) | 118, 946, 1282 |
| Kpn2I | TCCGGA | 2 cut(s) | 446, 1414 |
| Kzo9I | GATC | 7 cut(s) | 674, 946, 987, 1085, 1138, 1222, 1390 |
| LguI | GCTCTTC | 1 cut(s) | 594 |
| LmnI | GCTCC | 7 cut(s) | 668, 688, 874, 982, 1197, 1200, 1339 |
| Lsp1109I | GCAGC | 5 cut(s) | 719, 736, 758, 821, 843 |
| LweI | GCATC | 3 cut(s) | 361, 613, 886 |
| MaeI | CTAG | 6 cut(s) | 330, 678, 1187, 1196, 1317, 1465 |
| MaeII | ACGT | 1 cut(s) | 69 |
| MaeIII | GTNAC | 2 cut(s) | 233, 266 |
| MalI | GATC | 7 cut(s) | 676, 948, 989, 1087, 1140, 1224, 1392 |
| MbiI | CCGCTC | 1 cut(s) | 143 |
| MboI | GATC | 7 cut(s) | 674, 946, 987, 1085, 1138, 1222, 1390 |
| MboII | GAAGA | 9 cut(s) | 52, 611, 1239, 1265, 1364, 1375, 1381, 1414, 1420 |
| MfeI | CAATTG | 1 cut(s) | 1326 |
| MflI | RGATCY | 2 cut(s) | 946, 987 |
| MhlI | GDGCHC | 4 cut(s) | 264, 337, 685, 1194 |
| MluCI | AATT | 3 cut(s) | 83, 395, 1326 |
| MlyI | GAGTC | 4 cut(s) | 30, 109, 1123, 1253 |
| MmeI | TCCRAC | 3 cut(s) | 227, 710, 1157 |
| MroI | TCCGGA | 2 cut(s) | 446, 1414 |
| MseI | TTAA | 1 cut(s) | 668 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1427 |
| MspA1I | CMGCKG | 3 cut(s) | 184, 710, 1146 |
| MspR9I | CCNGG | 8 cut(s) | 253, 290, 472, 473, 499, 525, 1066, 1267 |
| MunI | CAATTG | 1 cut(s) | 1326 |
| Mva1269I | GAATGC | 1 cut(s) | 555 |
| MvaI | CCWGG | 3 cut(s) | 499, 525, 1066 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 160, 174, 610, 758, 843, 865, 874, 1458 |
| NciI | CCSGG | 5 cut(s) | 253, 290, 472, 473, 1267 |
| NcoI | CCATGG | 1 cut(s) | 114 |
| NdeII | GATC | 7 cut(s) | 674, 946, 987, 1085, 1138, 1222, 1390 |
| NlaIII | CATG | 3 cut(s) | 118, 946, 1282 |
| NlaIV | GGNNCC | 6 cut(s) | 201, 327, 454, 631, 684, 948 |
| NmeAIII | GCCGAG | 1 cut(s) | 31 |
| NmuCI | GTSAC | 1 cut(s) | 266 |
| PciSI | GCTCTTC | 1 cut(s) | 594 |
| PctI | GAATGC | 1 cut(s) | 555 |
| PfeI | GAWTC | 3 cut(s) | 482, 754, 1411 |
| PflFI | GACNNNGTC | 1 cut(s) | 71 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 425, 943 |
| PfoI | TCCNGGA | 1 cut(s) | 251 |
| PinAI | ACCGGT | 2 cut(s) | 206, 455 |
| PkrI | GCNGC | 8 cut(s) | 142, 709, 726, 751, 773, 798, 836, 858 |
| PleI | GAGTC | 4 cut(s) | 30, 108, 1123, 1252 |
| PpsI | GAGTC | 4 cut(s) | 30, 108, 1123, 1252 |
| Psp124BI | GAGCTC | 2 cut(s) | 264, 337 |
| Psp6I | CCWGG | 3 cut(s) | 497, 523, 1064 |
| PspGI | CCWGG | 3 cut(s) | 497, 523, 1064 |
| PspN4I | GGNNCC | 6 cut(s) | 201, 327, 454, 631, 684, 948 |
| PspPI | GGNCC | 1 cut(s) | 416 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1291, 1323 |
| PsuI | RGATCY | 2 cut(s) | 946, 987 |
| PsyI | GACNNNGTC | 1 cut(s) | 71 |
| PvuII | CAGCTG | 1 cut(s) | 710 |
| RsaI | GTAC | 1 cut(s) | 1457 |
| RsaNI | GTAC | 1 cut(s) | 1456 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1427 |
| SacI | GAGCTC | 2 cut(s) | 264, 337 |
| SapI | GCTCTTC | 1 cut(s) | 594 |
| SaqAI | TTAA | 1 cut(s) | 668 |
| SatI | GCNGC | 8 cut(s) | 141, 708, 725, 750, 772, 797, 835, 857 |
| Sau3AI | GATC | 7 cut(s) | 674, 946, 987, 1085, 1138, 1222, 1390 |
| Sau96I | GGNCC | 1 cut(s) | 416 |
| ScaI | AGTACT | 1 cut(s) | 1457 |
| SchI | GAGTC | 4 cut(s) | 30, 109, 1123, 1253 |
| ScrFI | CCNGG | 8 cut(s) | 253, 290, 472, 473, 499, 525, 1066, 1267 |
| SduI | GDGCHC | 4 cut(s) | 264, 337, 685, 1194 |
| SfaNI | GCATC | 3 cut(s) | 361, 613, 886 |
| SgrAI | CRCCGGYG | 1 cut(s) | 455 |
| SmaI | CCCGGG | 1 cut(s) | 473 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1427 |
| SmlI | CTYRAG | 1 cut(s) | 1131 |
| SmoI | CTYRAG | 1 cut(s) | 1131 |
| SpeI | ACTAGT | 1 cut(s) | 1186 |
| Sse9I | AATT | 3 cut(s) | 83, 395, 1326 |
| SspMI | CTAG | 6 cut(s) | 330, 678, 1187, 1196, 1317, 1465 |
| SstI | GAGCTC | 2 cut(s) | 264, 337 |
| StyD4I | CCNGG | 8 cut(s) | 251, 288, 470, 471, 497, 523, 1064, 1265 |
| StyI | CCWWGG | 2 cut(s) | 114, 1195 |
| TaaI | ACNGT | 1 cut(s) | 629 |
| TaiI | ACGT | 1 cut(s) | 72 |
| TaqI | TCGA | 5 cut(s) | 34, 639, 673, 1088, 1098 |
| TasI | AATT | 3 cut(s) | 83, 395, 1326 |
| TatI | WGTACW | 1 cut(s) | 1455 |
| TauI | GCSGC | 3 cut(s) | 143, 727, 799 |
| TfiI | GAWTC | 3 cut(s) | 482, 754, 1411 |
| Tru1I | TTAA | 1 cut(s) | 668 |
| Tru9I | TTAA | 1 cut(s) | 668 |
| TscAI | CASTG | 2 cut(s) | 1177, 1348 |
| TseFI | GTSAC | 1 cut(s) | 266 |
| TseI | GCWGC | 5 cut(s) | 707, 749, 771, 834, 856 |
| Tsp45I | GTSAC | 1 cut(s) | 266 |
| TspDTI | ATGAA | 4 cut(s) | 590, 1035, 1044, 1421 |
| TspGWI | ACGGA | 1 cut(s) | 93 |
| TspMI | CCCGGG | 1 cut(s) | 471 |
| TspRI | CASTG | 2 cut(s) | 1177, 1348 |
| Tth111I | GACNNNGTC | 1 cut(s) | 71 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 425, 943 |
| XapI | RAATTY | 1 cut(s) | 83 |
| XmaI | CCCGGG | 1 cut(s) | 471 |
| XmaJI | CCTAGG | 1 cut(s) | 1195 |
| XmiI | GTMKAC | 2 cut(s) | 172, 1074 |
| XspI | CTAG | 6 cut(s) | 330, 678, 1187, 1196, 1317, 1465 |
| ZraI | GACGTC | 1 cut(s) | 70 |
| ZrmI | AGTACT | 1 cut(s) | 1457 |