Rroxscaffold_6G00405800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016886
Physical Location & Seq
Forward (+)
28283171 .. 28285571
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405800.1

Sequence Viewer

Length: 687 bp
ATGGCCGAGTTTCCTCCGAATGTTGACGATGCTCGACTGTGGCTTCCCTCTGATACTTTCTTCAACGACGTCGTCCTCCCGTCTGAATTTAGCCCCCACCAGAGTCGCTTTTCCTCCATGGACGACCTCGCTCATCACCTCGCCTCTCTCACTTTGCTCAAACAGCGTCGCAGCCTACGCCTTCAGCGGTTCAGACCGCCGGTTCCGACCGGTCAGCTTGATTATCAGTCCCAGCGTTATCTCACTGGCTTCTCCGGGACTGAGCTCCGTCACCACTACCCGTTCCCGAACCCGGTTCAGCTTCAGATTGGTGATGGTAGCTTTCTGGAACCTAGAGCTCGGGCTTTGAGGAGGCATCATAACCAAGCCCAACTCCGAAACCAAAGCCGCCTTTTCCAATTTCAGGGAAATGGGATTGGCCCAACGGGTGGTGCTTTTGAGAGGGTTTCCGGAGGCACCGGTGTTTTCCATCCCCGGGTTTTGGATTCCACCAAAACCACCAGGAGTGTTGAGGTCAAAAAGAAACCTGTTTCCTTTCGGGTTAATGGTCTGATGACAGGGTTGAGAATTAGGCAAGAGAGTAGAGGCATTCAACAAAGGAACTCTATGAATAAATGCGTTGGTATGGGCGAAGAGCATCACCAGCTTCGTCCTGATGTTGTTTTACCTCAAGAGTGGACTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

26.1

Weight (kDa)

10.45

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016886)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20250
malus_domestica MD12G1039600.v1.1
prunus_persica Prupe.7G095600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475841
rosa_laevigata RLG00000023809
rosa_multiflora Rmu_sc0000539.1_g000089 Rmu_sc0011491.1_g000001
rosa_roxburghii Rroxscaffold_6G00405800
rosa_rugosa Rorug03G0151700
rosa_samantha Rh3AG201500 Rh3BG231800 Rh3CG226500 Rh3DG227100
rosa_wichuraiana Rw3G018350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 455
AccB7I CCANNNNNTGG 1 cut(s) 428
AccIII TCCGGA 1 cut(s) 449
AciI CCGC 3 cut(s) 187, 197, 388
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 2 cut(s) 167, 287
AcyI GRCGYC 1 cut(s) 69
AfiI CCNNNNNNNGG 5 cut(s) 292, 403, 428, 475, 481
AgeI ACCGGT 2 cut(s) 209, 458
AgsI TTSAA 2 cut(s) 64, 593
AjnI CCWGG 1 cut(s) 500
AluBI AGCT 6 cut(s) 217, 265, 301, 321, 338, 646
AluI AGCT 6 cut(s) 217, 265, 301, 321, 338, 646
Alw21I GWGCWC 2 cut(s) 267, 340
Ama87I CYCGRG 2 cut(s) 339, 474
Aor13HI TCCGGA 1 cut(s) 449
AoxI GGCC 2 cut(s) 3, 418
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 86
AsiGI ACCGGT 2 cut(s) 209, 458
AspS9I GGNCC 1 cut(s) 419
AsuC2I CCSGG 4 cut(s) 256, 293, 475, 476
AsuHPI GGTGA 4 cut(s) 128, 263, 323, 632
AvaI CYCGRG 2 cut(s) 339, 474
BanI GGYRCC 1 cut(s) 455
BanII GRGCYC 2 cut(s) 267, 340
Bbv12I GWGCWC 2 cut(s) 267, 340
BbvI GCAGC 1 cut(s) 183
BccI CCATC 2 cut(s) 308, 477
BciT130I CCWGG 1 cut(s) 502
BcnI CCSGG 4 cut(s) 256, 293, 475, 476
BfaI CTAG 1 cut(s) 333
BisI GCNGC 2 cut(s) 172, 388
BlsI GCNGC 2 cut(s) 173, 389
Bme1390I CCNGG 5 cut(s) 256, 293, 475, 476, 502
BmeT110I CYCGRG 2 cut(s) 339, 474
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 3 cut(s) 204, 330, 457
BmrFI CCNGG 5 cut(s) 256, 293, 475, 476, 502
BmsI GCATC 3 cut(s) 19, 364, 646
BpuEI CTTGAG 1 cut(s) 654
BpuMI CCSGG 4 cut(s) 256, 293, 475, 476
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 3 cut(s) 117, 473, 474
BsaWI WCCGGW 3 cut(s) 209, 449, 458
Bsc4I CCNNNNNNNGG 5 cut(s) 292, 403, 428, 475, 481
Bse118I RCCGGY 3 cut(s) 199, 209, 458
Bse1I ACTGG 1 cut(s) 250
BseAI TCCGGA 1 cut(s) 449
BseBI CCWGG 1 cut(s) 502
BseDI CCNNGG 3 cut(s) 117, 473, 474
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 5 cut(s) 292, 403, 428, 475, 481
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 364
BseXI GCAGC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 5, 420
BshNI GGYRCC 1 cut(s) 455
BshTI ACCGGT 2 cut(s) 209, 458
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 267, 340
BsiHKCI CYCGRG 2 cut(s) 339, 474
BsiSI CCGG 7 cut(s) 200, 210, 255, 293, 450, 459, 475
BslFI GGGAC 2 cut(s) 214, 271
BslI CCNNNNNNNGG 5 cut(s) 292, 403, 428, 475, 481
BsmFI GGGAC 2 cut(s) 214, 271
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 2 cut(s) 5, 420
BsoBI CYCGRG 2 cut(s) 339, 474
Bsp1286I GDGCHC 2 cut(s) 267, 340
Bsp13I TCCGGA 1 cut(s) 449
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 3 cut(s) 187, 197, 388
BspANI GGCC 2 cut(s) 5, 420
BspCNI CTCAG 1 cut(s) 253
BspEI TCCGGA 1 cut(s) 449
BspLI GGNNCC 3 cut(s) 204, 330, 457
BspQI GCTCTTC 1 cut(s) 627
BspT107I GGYRCC 1 cut(s) 455
BsrFI RCCGGY 3 cut(s) 199, 209, 458
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 3 cut(s) 199, 209, 458
BssECI CCNNGG 3 cut(s) 117, 473, 474
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 627
BstACI GRCGYC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 469
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 3 cut(s) 163, 177, 643
BstNI CCWGG 1 cut(s) 502
BstSCI CCNGG 5 cut(s) 254, 291, 473, 474, 500
BstV1I GCAGC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 5, 420
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 243
Cfr10I RCCGGY 3 cut(s) 199, 209, 458
Cfr13I GGNCC 1 cut(s) 419
Cfr9I CCCGGG 1 cut(s) 474
CseI GACGC 1 cut(s) 155
CspAI ACCGGT 2 cut(s) 209, 458
CviAII CATG 1 cut(s) 118
DdeI CTNAG 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Ecl136II GAGCTC 2 cut(s) 265, 338
Eco130I CCWWGG 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 267, 340
Eco53kI GAGCTC 2 cut(s) 265, 338
Eco57I CTGAAG 2 cut(s) 167, 287
Eco88I CYCGRG 2 cut(s) 339, 474
EcoICRI GAGCTC 2 cut(s) 265, 338
EcoRII CCWGG 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 117
EcoT38I GRGCYC 2 cut(s) 267, 340
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 121
FaiI YATR 4 cut(s) 119, 360, 608, 626
FaqI GGGAC 2 cut(s) 214, 271
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 172, 388
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 2 cut(s) 267, 340
Fsp4HI GCNGC 2 cut(s) 172, 388
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 172, 388
GsaI CCCAGC 1 cut(s) 235
HaeIII GGCC 2 cut(s) 5, 420
HapII CCGG 7 cut(s) 200, 210, 255, 293, 450, 459, 475
HgaI GACGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 121
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 103, 485
HpaII CCGG 7 cut(s) 200, 210, 255, 293, 450, 459, 475
HphI GGTGA 4 cut(s) 128, 263, 323, 632
Hpy166II GTNNAC 2 cut(s) 25, 678
Hpy188I TCNGA 8 cut(s) 18, 52, 85, 194, 207, 306, 377, 552
Hpy188III TCNNGA 5 cut(s) 286, 326, 450, 653, 671
Hpy8I GTNNAC 2 cut(s) 25, 678
Hpy99I CGWCG 3 cut(s) 71, 74, 171
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 177, 643
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 121
Kpn2I TCCGGA 1 cut(s) 449
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 1 cut(s) 270
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 3 cut(s) 19, 364, 646
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 269
MboII GAAGA 2 cut(s) 52, 644
MhlI GDGCHC 2 cut(s) 267, 340
MluCI AATT 3 cut(s) 86, 398, 567
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 230
MroI TCCGGA 1 cut(s) 449
MseI TTAA 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 7 cut(s) 200, 210, 255, 293, 450, 459, 475
MspR9I CCNGG 5 cut(s) 256, 293, 475, 476, 502
Mva1269I GAATGC 1 cut(s) 588
MvaI CCWGG 1 cut(s) 502
MwoI GCNNNNNNNGC 3 cut(s) 163, 177, 643
NciI CCSGG 4 cut(s) 256, 293, 475, 476
NcoI CCATGG 1 cut(s) 117
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 3 cut(s) 204, 330, 457
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 627
PctI GAATGC 1 cut(s) 588
PfeI GAWTC 1 cut(s) 485
PflFI GACNNNGTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 254
PinAI ACCGGT 2 cut(s) 209, 458
PkrI GCNGC 2 cut(s) 173, 389
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
Psp124BI GAGCTC 2 cut(s) 267, 340
Psp6I CCWGG 1 cut(s) 500
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 1 cut(s) 500
PspN4I GGNNCC 3 cut(s) 204, 330, 457
PspPI GGNCC 1 cut(s) 419
PsyI GACNNNGTC 1 cut(s) 71
SacI GAGCTC 2 cut(s) 267, 340
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 2 cut(s) 172, 388
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 5 cut(s) 256, 293, 475, 476, 502
SduI GDGCHC 2 cut(s) 267, 340
SfaNI GCATC 3 cut(s) 19, 364, 646
SgrAI CRCCGGYG 1 cut(s) 458
SmaI CCCGGG 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 669
SmoI CTYRAG 1 cut(s) 669
Sse9I AATT 3 cut(s) 86, 398, 567
SsiI CCGC 3 cut(s) 187, 197, 388
SspMI CTAG 1 cut(s) 333
SstI GAGCTC 2 cut(s) 267, 340
StyD4I CCNGG 5 cut(s) 254, 291, 473, 474, 500
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 34
TasI AATT 3 cut(s) 86, 398, 567
TauI GCSGC 1 cut(s) 390
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 623
TspGWI ACGGA 1 cut(s) 257
TspMI CCCGGG 1 cut(s) 474
TspRI CASTG 1 cut(s) 250
Tth111I GACNNNGTC 1 cut(s) 71
Van91I CCANNNNNTGG 1 cut(s) 428
XapI RAATTY 1 cut(s) 86
XmaI CCCGGG 1 cut(s) 474
XspI CTAG 1 cut(s) 333
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.