Rmu_sc0011491.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011491.1
OG0016886
Physical Location & Seq
Forward (+)
531 .. 951
421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011491.1_g000001.1.cds

Sequence Viewer

Length: 315 bp
atggccgagtttcctccgaatgttgacgacgctcgactctggcttccctctgatactttcttcaacgacgtcgtcccgtctgaatttagcccccaccagagtccgttttcctccatggacgacctctctcgtcacctcgccgctctcactttgctcaaacagcgtcgcagtctacgccttcagcggttcagaccgccggttccgaccggtcagcttgattttcagttccagcgttacttcaacggcttctccgggactgagctctgtcaccactacccgttcccgaacccggttcagcttcaggtacaacagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

12.13

Weight (kDa)

6.38

Isoelectric Point (pI)

84.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016886)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20250
malus_domestica MD12G1039600.v1.1
prunus_persica Prupe.7G095600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475841
rosa_laevigata RLG00000023809
rosa_multiflora Rmu_sc0000539.1_g000089 Rmu_sc0011491.1_g000001
rosa_roxburghii Rroxscaffold_6G00405800
rosa_rugosa Rorug03G0151700
rosa_samantha Rh3AG201500 Rh3BG231800 Rh3CG226500 Rh3DG227100
rosa_wichuraiana Rw3G018350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 172
AciI CCGC 3 cut(s) 141, 184, 194
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 2 cut(s) 164, 284
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 289
AgeI ACCGGT 1 cut(s) 206
AgsI TTSAA 2 cut(s) 64, 241
AluBI AGCT 3 cut(s) 214, 262, 298
AluI AGCT 3 cut(s) 214, 262, 298
Alw21I GWGCWC 1 cut(s) 264
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 83
AsiGI ACCGGT 1 cut(s) 206
AsuC2I CCSGG 2 cut(s) 253, 290
AsuHPI GGTGA 2 cut(s) 125, 260
BaeI ACNNNNGTAYC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 264
BceAI ACGGC 1 cut(s) 259
BcnI CCSGG 2 cut(s) 253, 290
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 253, 290
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 253, 290
BpuMI CCSGG 2 cut(s) 253, 290
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse118I RCCGGY 2 cut(s) 196, 206
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 4 cut(s) 197, 207, 252, 290
BslFI GGGAC 2 cut(s) 59, 268
BslI CCNNNNNNNGG 1 cut(s) 289
BsmFI GGGAC 2 cut(s) 59, 268
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 264
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 3 cut(s) 141, 184, 194
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 201
BsrBI CCGCTC 1 cut(s) 143
BsrFI RCCGGY 2 cut(s) 196, 206
BssAI RCCGGY 2 cut(s) 196, 206
BssECI CCNNGG 1 cut(s) 114
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 312
BstACI GRCGYC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 2 cut(s) 160, 174
BstSCI CCNGG 2 cut(s) 251, 288
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 114
Cfr10I RCCGGY 2 cut(s) 196, 206
CseI GACGC 2 cut(s) 38, 152
Csp6I GTAC 1 cut(s) 305
CspAI ACCGGT 1 cut(s) 206
CviAII CATG 1 cut(s) 115
CviJI RGCY 7 cut(s) 5, 43, 90, 214, 246, 262, 298
CviKI_1 RGCY 7 cut(s) 5, 43, 90, 214, 246, 262, 298
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 2 cut(s) 164, 284
EcoICRI GAGCTC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FaqI GGGAC 2 cut(s) 59, 268
FatI CATG 1 cut(s) 114
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 141
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 197, 207, 252, 290
HgaI GACGC 2 cut(s) 38, 152
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 118
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 36, 100
HpaII CCGG 4 cut(s) 197, 207, 252, 290
HphI GGTGA 2 cut(s) 125, 260
Hpy166II GTNNAC 2 cut(s) 25, 173
Hpy188I TCNGA 5 cut(s) 18, 52, 82, 191, 204
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 2 cut(s) 25, 173
Hpy99I CGWCG 4 cut(s) 32, 71, 74, 168
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4IV ACGT 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 174
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 118
LpnPI CCDG 8 cut(s) 25, 110, 210, 220, 242, 265, 287, 303
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 3 cut(s) 131, 233, 266
MbiI CCGCTC 1 cut(s) 143
MboII GAAGA 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 83
MlyI GAGTC 2 cut(s) 30, 109
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 5 cut(s) 24, 58, 121, 134, 146
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 4 cut(s) 197, 207, 252, 290
MspR9I CCNGG 2 cut(s) 253, 290
MwoI GCNNNNNNNGC 2 cut(s) 160, 174
NciI CCSGG 2 cut(s) 253, 290
NcoI CCATGG 1 cut(s) 114
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 201
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 131, 266
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 251
PinAI ACCGGT 1 cut(s) 206
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 2 cut(s) 30, 108
PpsI GAGTC 2 cut(s) 30, 108
Psp124BI GAGCTC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 201
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SacI GAGCTC 1 cut(s) 264
SatI GCNGC 1 cut(s) 141
SchI GAGTC 2 cut(s) 30, 109
ScrFI CCNGG 2 cut(s) 253, 290
SduI GDGCHC 1 cut(s) 264
SetI ASST 7 cut(s) 72, 126, 138, 216, 264, 300, 306
Sse9I AATT 1 cut(s) 83
SsiI CCGC 3 cut(s) 141, 184, 194
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 251, 288
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 312
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 34
TasI AATT 1 cut(s) 83
TauI GCSGC 1 cut(s) 143
TseFI GTSAC 2 cut(s) 131, 266
Tsp45I GTSAC 2 cut(s) 131, 266
TspGWI ACGGA 1 cut(s) 93
Tth111I GACNNNGTC 1 cut(s) 71
XapI RAATTY 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 172
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.