Rh3BG231800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0016886
Physical Location & Seq
Reverse (-)
21503940 .. 21506283
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG231800.1

Sequence Viewer

Length: 657 bp
ATGACCGAGTTTCCTCCGAATGTTGACGACGCTCGACTGTGGCTTCCCTCTGATACTTTCTTCAACGACGTCGTCGTCCCGTCTGAATTTAGCCCCCACCAGAGTCCGTTTTCCTCCATGGACGACCTCTCTCGTCACCTCGCCGCTCTCACTTTACTCAAACAGCGTCGCAGCCTACGCCTTCAGCGGTTCAGACCGCCGGTTCCGACCGGTCAGCTTGATTATCAGTCCCAGTGTTATCTCACTGGCTTCTCCAGGACTGAGCTCTGTCACCACTACCCGTTCCCGAACCCGGTTCAGCTTCAGATTGGTGATGGTAGCTTTCTGGAACCTAGAGCTCGGGCTTTGAGGAGGCATCATAACCAAGCCCAAATCCGAAACCAAAACCGCCTTTTCCAATTTCAGGGAAATGGGATTGGCCCAATGGGTGGTGGTTTTGAGAGGGTTTCCGGAGGCACCGGTGTTTTTCACCCCCGGGTTTTGGATTCCACCAAAACCACCAGGAGTCCTGAGGTCAAAAAGAAACCTGGGTTGAGAAGTAGGCAAGAGATTAGAGGCATTCAACAAAGGAACTCTATGAATAAATGCGTTGGTATGGGCGAAGAGCATCACCAGCTTCGTCCTGATGTTGTTTTACCTCAAGAGTGGACTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

25.0

Weight (kDa)

9.86

Isoelectric Point (pI)

70.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016886)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20250
malus_domestica MD12G1039600.v1.1
prunus_persica Prupe.7G095600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475841
rosa_laevigata RLG00000023809
rosa_multiflora Rmu_sc0000539.1_g000089 Rmu_sc0011491.1_g000001
rosa_roxburghii Rroxscaffold_6G00405800
rosa_rugosa Rorug03G0151700
rosa_samantha Rh3AG201500 Rh3BG231800 Rh3CG226500 Rh3DG227100
rosa_wichuraiana Rw3G018350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AatII GACGTC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 455
AccB7I CCANNNNNTGG 1 cut(s) 428
AccBSI CCGCTC 1 cut(s) 146
AccIII TCCGGA 1 cut(s) 449
AciI CCGC 4 cut(s) 144, 187, 197, 388
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 2 cut(s) 167, 287
AcyI GRCGYC 1 cut(s) 69
AfiI CCNNNNNNNGG 4 cut(s) 292, 403, 428, 481
AgeI ACCGGT 2 cut(s) 209, 458
AgsI TTSAA 2 cut(s) 64, 563
AjnI CCWGG 3 cut(s) 254, 500, 526
AluBI AGCT 6 cut(s) 217, 265, 301, 321, 338, 616
AluI AGCT 6 cut(s) 217, 265, 301, 321, 338, 616
Alw21I GWGCWC 2 cut(s) 267, 340
Ama87I CYCGRG 2 cut(s) 339, 474
Aor13HI TCCGGA 1 cut(s) 449
AoxI GGCC 1 cut(s) 418
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 86
AsiGI ACCGGT 2 cut(s) 209, 458
AspS9I GGNCC 1 cut(s) 419
AsuC2I CCSGG 3 cut(s) 293, 475, 476
AsuHPI GGTGA 5 cut(s) 128, 263, 323, 461, 602
AvaI CYCGRG 2 cut(s) 339, 474
AxyI CCTNAGG 1 cut(s) 510
BanI GGYRCC 1 cut(s) 455
BanII GRGCYC 2 cut(s) 267, 340
Bbv12I GWGCWC 2 cut(s) 267, 340
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 308
BciT130I CCWGG 3 cut(s) 256, 502, 528
BcnI CCSGG 3 cut(s) 293, 475, 476
BfaI CTAG 1 cut(s) 333
BisI GCNGC 2 cut(s) 144, 172
BlsI GCNGC 2 cut(s) 145, 173
Bme1390I CCNGG 6 cut(s) 256, 293, 475, 476, 502, 528
BmeT110I CYCGRG 2 cut(s) 339, 474
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 3 cut(s) 204, 330, 457
BmrFI CCNGG 6 cut(s) 256, 293, 475, 476, 502, 528
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 364, 616
BmuI ACTGGG 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 624
BpuMI CCSGG 3 cut(s) 293, 475, 476
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 4 cut(s) 117, 473, 474, 527
BsaWI WCCGGW 3 cut(s) 209, 449, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 292, 403, 428, 481
Bse118I RCCGGY 3 cut(s) 199, 209, 458
Bse1I ACTGG 2 cut(s) 232, 250
Bse21I CCTNAGG 1 cut(s) 510
BseAI TCCGGA 1 cut(s) 449
BseBI CCWGG 3 cut(s) 256, 502, 528
BseDI CCNNGG 4 cut(s) 117, 473, 474, 527
BseLI CCNNNNNNNGG 4 cut(s) 292, 403, 428, 481
BseMII CTCAG 2 cut(s) 252, 501
BseNI ACTGG 2 cut(s) 232, 250
BseRI GAGGAG 1 cut(s) 364
BseXI GCAGC 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 420
BshNI GGYRCC 1 cut(s) 455
BshTI ACCGGT 2 cut(s) 209, 458
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 267, 340
BsiHKCI CYCGRG 2 cut(s) 339, 474
BsiSI CCGG 6 cut(s) 200, 210, 293, 450, 459, 475
BslFI GGGAC 2 cut(s) 62, 214
BslI CCNNNNNNNGG 4 cut(s) 292, 403, 428, 481
BsmFI GGGAC 2 cut(s) 62, 214
BsmI GAATGC 1 cut(s) 558
BsnI GGCC 1 cut(s) 420
BsoBI CYCGRG 2 cut(s) 339, 474
Bsp1286I GDGCHC 2 cut(s) 267, 340
Bsp13I TCCGGA 1 cut(s) 449
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 4 cut(s) 144, 187, 197, 388
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 2 cut(s) 253, 502
BspEI TCCGGA 1 cut(s) 449
BspLI GGNNCC 3 cut(s) 204, 330, 457
BspQI GCTCTTC 1 cut(s) 597
BspT107I GGYRCC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 146
BsrFI RCCGGY 3 cut(s) 199, 209, 458
BsrI ACTGG 2 cut(s) 232, 250
BssAI RCCGGY 3 cut(s) 199, 209, 458
BssECI CCNNGG 4 cut(s) 117, 473, 474, 527
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 3 cut(s) 256, 502, 528
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 597
BstACI GRCGYC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 261, 510
BstDSI CCRYGG 1 cut(s) 117
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 2 cut(s) 177, 613
BstNI CCWGG 3 cut(s) 256, 502, 528
BstSCI CCNGG 6 cut(s) 254, 291, 473, 474, 500, 526
BstV1I GCAGC 1 cut(s) 183
Bsu36I CCTNAGG 1 cut(s) 510
BsuRI GGCC 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 239, 243
Cfr10I RCCGGY 3 cut(s) 199, 209, 458
Cfr13I GGNCC 1 cut(s) 419
Cfr9I CCCGGG 1 cut(s) 474
CseI GACGC 2 cut(s) 38, 155
CspAI ACCGGT 2 cut(s) 209, 458
CviAII CATG 1 cut(s) 118
DdeI CTNAG 2 cut(s) 261, 510
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Ecl136II GAGCTC 2 cut(s) 265, 338
Eco130I CCWWGG 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 267, 340
Eco53kI GAGCTC 2 cut(s) 265, 338
Eco57I CTGAAG 2 cut(s) 167, 287
Eco81I CCTNAGG 1 cut(s) 510
Eco88I CYCGRG 2 cut(s) 339, 474
EcoICRI GAGCTC 2 cut(s) 265, 338
EcoRII CCWGG 3 cut(s) 254, 500, 526
EcoT14I CCWWGG 1 cut(s) 117
EcoT38I GRGCYC 2 cut(s) 267, 340
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 121
FaiI YATR 4 cut(s) 119, 360, 578, 596
FaqI GGGAC 2 cut(s) 62, 214
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 144, 172
FriOI GRGCYC 2 cut(s) 267, 340
Fsp4HI GCNGC 2 cut(s) 144, 172
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 144, 172
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 1 cut(s) 420
HapII CCGG 6 cut(s) 200, 210, 293, 450, 459, 475
HgaI GACGC 2 cut(s) 38, 155
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 121
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 3 cut(s) 103, 485, 505
HpaII CCGG 6 cut(s) 200, 210, 293, 450, 459, 475
HphI GGTGA 5 cut(s) 128, 263, 323, 461, 602
Hpy166II GTNNAC 2 cut(s) 25, 648
Hpy188I TCNGA 7 cut(s) 18, 52, 85, 194, 207, 306, 377
Hpy188III TCNNGA 6 cut(s) 286, 326, 450, 509, 623, 641
Hpy8I GTNNAC 2 cut(s) 25, 648
Hpy99I CGWCG 5 cut(s) 32, 71, 74, 77, 171
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 613
HpyF3I CTNAG 2 cut(s) 261, 510
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 121
Kpn2I TCCGGA 1 cut(s) 449
LguI GCTCTTC 1 cut(s) 597
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 2 cut(s) 364, 616
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 134, 269
MbiI CCGCTC 1 cut(s) 146
MboII GAAGA 2 cut(s) 52, 614
MhlI GDGCHC 2 cut(s) 267, 340
MluCI AATT 2 cut(s) 86, 398
MlyI GAGTC 2 cut(s) 112, 514
MmeI TCCRAC 1 cut(s) 230
MroI TCCGGA 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 6 cut(s) 200, 210, 293, 450, 459, 475
MspR9I CCNGG 6 cut(s) 256, 293, 475, 476, 502, 528
Mva1269I GAATGC 1 cut(s) 558
MvaI CCWGG 3 cut(s) 256, 502, 528
MwoI GCNNNNNNNGC 2 cut(s) 177, 613
NciI CCSGG 3 cut(s) 293, 475, 476
NcoI CCATGG 1 cut(s) 117
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 3 cut(s) 204, 330, 457
NmuCI GTSAC 2 cut(s) 134, 269
PciSI GCTCTTC 1 cut(s) 597
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 558
PfeI GAWTC 1 cut(s) 485
PflFI GACNNNGTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 254
PinAI ACCGGT 2 cut(s) 209, 458
PkrI GCNGC 2 cut(s) 145, 173
PleI GAGTC 2 cut(s) 111, 513
PpsI GAGTC 2 cut(s) 111, 513
Psp124BI GAGCTC 2 cut(s) 267, 340
Psp6I CCWGG 3 cut(s) 254, 500, 526
PspGI CCWGG 3 cut(s) 254, 500, 526
PspN4I GGNNCC 3 cut(s) 204, 330, 457
PspPI GGNCC 1 cut(s) 419
PsyI GACNNNGTC 1 cut(s) 71
SacI GAGCTC 2 cut(s) 267, 340
SapI GCTCTTC 1 cut(s) 597
SatI GCNGC 2 cut(s) 144, 172
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 2 cut(s) 112, 514
ScrFI CCNGG 6 cut(s) 256, 293, 475, 476, 502, 528
SduI GDGCHC 2 cut(s) 267, 340
SfaNI GCATC 2 cut(s) 364, 616
SgrAI CRCCGGYG 1 cut(s) 458
SmaI CCCGGG 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 639
SmoI CTYRAG 1 cut(s) 639
Sse9I AATT 2 cut(s) 86, 398
SsiI CCGC 4 cut(s) 144, 187, 197, 388
SspMI CTAG 1 cut(s) 333
SstI GAGCTC 2 cut(s) 267, 340
StyD4I CCNGG 6 cut(s) 254, 291, 473, 474, 500, 526
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 34
TaqII GACCGA 1 cut(s) 20
TasI AATT 2 cut(s) 86, 398
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 485
TscAI CASTG 2 cut(s) 239, 250
TseFI GTSAC 2 cut(s) 134, 269
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 2 cut(s) 134, 269
TspDTI ATGAA 1 cut(s) 593
TspGWI ACGGA 1 cut(s) 96
TspMI CCCGGG 1 cut(s) 474
TspRI CASTG 2 cut(s) 239, 250
Tth111I GACNNNGTC 1 cut(s) 71
Van91I CCANNNNNTGG 1 cut(s) 428
XapI RAATTY 1 cut(s) 86
XmaI CCCGGG 1 cut(s) 474
XspI CTAG 1 cut(s) 333
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.