Rh3AG201500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0016886
Physical Location & Seq
Reverse (-)
19873047 .. 19875727
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG201500.1

Sequence Viewer

Length: 534 bp
ATGGCCGAGTTTCCTCCGAATGTTGACGACGCTCGACTCTGGCTTCCCTCTGATACTTTCTTCAACGACGTCGTCCCGTCTGAATTTAGCCCCCACCAGAGTCCGTTTTCCTCCATGGACGACCTCGCTCATCAACTCGCCGCTCTCACTTTGCTCAAACAGCGTCGCAGTCTACGCCTTCAGCGGTTCAGACCGCCGGTTCCGACCGGTCAGCTTGATTTTCAGTTCCAGCGTTACTTCAACGGCTTCTCCGGGACTGAGCTCTGTCACCACTACCCGTTCCCGAACCCGGTTCAGCTTCAGATTGGTGATGGTGGCTTTCTGGAACCTAGAGCTCGGGCTTTGAGGAGGCATCATAACCAAGCCCAAATCCGAAACCAAAACCGCCTTTTCCAATTTCAGGGAAATGGGATTGGCCCAATGGGTGGTGCTTTTGAGAGGGTTTCCGGAGGCACCGGTGTTTTTCACCCCCGGGTTTTGGATTCCACCAAAACCGCCAGGAGTGTTGAGGTCAAAAAGAAACCTGGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.06

Weight (kDa)

9.88

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016886)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20250
malus_domestica MD12G1039600.v1.1
prunus_persica Prupe.7G095600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475841
rosa_laevigata RLG00000023809
rosa_multiflora Rmu_sc0000539.1_g000089 Rmu_sc0011491.1_g000001
rosa_roxburghii Rroxscaffold_6G00405800
rosa_rugosa Rorug03G0151700
rosa_samantha Rh3AG201500 Rh3BG231800 Rh3CG226500 Rh3DG227100
rosa_wichuraiana Rw3G018350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 452
AccB7I CCANNNNNTGG 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 172
AccIII TCCGGA 1 cut(s) 446
AciI CCGC 5 cut(s) 141, 184, 194, 385, 495
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 2 cut(s) 164, 284
AcyI GRCGYC 1 cut(s) 69
AfiI CCNNNNNNNGG 4 cut(s) 289, 400, 425, 478
AgeI ACCGGT 2 cut(s) 206, 455
AgsI TTSAA 2 cut(s) 64, 241
AjnI CCWGG 2 cut(s) 497, 523
AluBI AGCT 4 cut(s) 214, 262, 298, 335
AluI AGCT 4 cut(s) 214, 262, 298, 335
Alw21I GWGCWC 2 cut(s) 264, 337
Ama87I CYCGRG 2 cut(s) 336, 471
Aor13HI TCCGGA 1 cut(s) 446
AoxI GGCC 2 cut(s) 3, 415
ApoI RAATTY 1 cut(s) 83
AsiGI ACCGGT 2 cut(s) 206, 455
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 4 cut(s) 253, 290, 472, 473
AsuHPI GGTGA 3 cut(s) 260, 320, 458
AvaI CYCGRG 2 cut(s) 336, 471
BanI GGYRCC 1 cut(s) 452
BanII GRGCYC 2 cut(s) 264, 337
Bbv12I GWGCWC 2 cut(s) 264, 337
BccI CCATC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 499, 525
BcnI CCSGG 4 cut(s) 253, 290, 472, 473
BfaI CTAG 1 cut(s) 330
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 6 cut(s) 253, 290, 472, 473, 499, 525
BmeT110I CYCGRG 2 cut(s) 336, 471
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 3 cut(s) 201, 327, 454
BmrFI CCNGG 6 cut(s) 253, 290, 472, 473, 499, 525
BmsI GCATC 1 cut(s) 361
BpuMI CCSGG 4 cut(s) 253, 290, 472, 473
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 3 cut(s) 114, 470, 471
BsaWI WCCGGW 3 cut(s) 206, 446, 455
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 400, 425, 478
Bse118I RCCGGY 3 cut(s) 196, 206, 455
BseAI TCCGGA 1 cut(s) 446
BseBI CCWGG 2 cut(s) 499, 525
BseDI CCNNGG 3 cut(s) 114, 470, 471
BseLI CCNNNNNNNGG 4 cut(s) 289, 400, 425, 478
BseMII CTCAG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 361
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 5, 417
BshNI GGYRCC 1 cut(s) 452
BshTI ACCGGT 2 cut(s) 206, 455
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 264, 337
BsiHKCI CYCGRG 2 cut(s) 336, 471
BsiSI CCGG 7 cut(s) 197, 207, 252, 290, 447, 456, 472
BslFI GGGAC 2 cut(s) 59, 268
BslI CCNNNNNNNGG 4 cut(s) 289, 400, 425, 478
BsmFI GGGAC 2 cut(s) 59, 268
BsnI GGCC 2 cut(s) 5, 417
BsoBI CYCGRG 2 cut(s) 336, 471
Bsp1286I GDGCHC 2 cut(s) 264, 337
Bsp13I TCCGGA 1 cut(s) 446
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 5 cut(s) 141, 184, 194, 385, 495
BspANI GGCC 2 cut(s) 5, 417
BspCNI CTCAG 1 cut(s) 250
BspEI TCCGGA 1 cut(s) 446
BspLI GGNNCC 3 cut(s) 201, 327, 454
BspT107I GGYRCC 1 cut(s) 452
BsrBI CCGCTC 1 cut(s) 143
BsrFI RCCGGY 3 cut(s) 196, 206, 455
BssAI RCCGGY 3 cut(s) 196, 206, 455
BssECI CCNNGG 3 cut(s) 114, 470, 471
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 499, 525
BstACI GRCGYC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 2 cut(s) 160, 174
BstNI CCWGG 2 cut(s) 499, 525
BstSCI CCNGG 6 cut(s) 251, 288, 470, 471, 497, 523
BsuRI GGCC 2 cut(s) 5, 417
BtgI CCRYGG 1 cut(s) 114
Cfr10I RCCGGY 3 cut(s) 196, 206, 455
Cfr13I GGNCC 1 cut(s) 416
Cfr9I CCCGGG 1 cut(s) 471
CseI GACGC 2 cut(s) 38, 152
CsiI ACCWGGT 1 cut(s) 523
CspAI ACCGGT 2 cut(s) 206, 455
CviAII CATG 1 cut(s) 115
DdeI CTNAG 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 2 cut(s) 262, 335
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 2 cut(s) 264, 337
Eco53kI GAGCTC 2 cut(s) 262, 335
Eco57I CTGAAG 2 cut(s) 164, 284
Eco88I CYCGRG 2 cut(s) 336, 471
EcoICRI GAGCTC 2 cut(s) 262, 335
EcoRII CCWGG 2 cut(s) 497, 523
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 264, 337
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 118
FaiI YATR 2 cut(s) 116, 357
FaqI GGGAC 2 cut(s) 59, 268
FatI CATG 1 cut(s) 114
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 141
FriOI GRGCYC 2 cut(s) 264, 337
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 2 cut(s) 5, 417
HapII CCGG 7 cut(s) 197, 207, 252, 290, 447, 456, 472
HgaI GACGC 2 cut(s) 38, 152
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 118
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 3 cut(s) 36, 100, 482
HpaII CCGG 7 cut(s) 197, 207, 252, 290, 447, 456, 472
HphI GGTGA 3 cut(s) 260, 320, 458
Hpy166II GTNNAC 2 cut(s) 25, 173
Hpy188I TCNGA 7 cut(s) 18, 52, 82, 191, 204, 303, 374
Hpy188III TCNNGA 3 cut(s) 283, 323, 447
Hpy8I GTNNAC 2 cut(s) 25, 173
Hpy99I CGWCG 4 cut(s) 32, 71, 74, 168
HpyAV CCTTC 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 174
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 118
Kpn2I TCCGGA 1 cut(s) 446
LweI GCATC 1 cut(s) 361
MabI ACCWGGT 1 cut(s) 523
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 233, 266
MbiI CCGCTC 1 cut(s) 143
MboII GAAGA 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 264, 337
MluCI AATT 2 cut(s) 83, 395
MlyI GAGTC 2 cut(s) 30, 109
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 9 cut(s) 24, 58, 121, 134, 339, 342, 432, 443, 502
MroI TCCGGA 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 7 cut(s) 197, 207, 252, 290, 447, 456, 472
MspR9I CCNGG 6 cut(s) 253, 290, 472, 473, 499, 525
MvaI CCWGG 2 cut(s) 499, 525
MwoI GCNNNNNNNGC 2 cut(s) 160, 174
NciI CCSGG 4 cut(s) 253, 290, 472, 473
NcoI CCATGG 1 cut(s) 114
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 3 cut(s) 201, 327, 454
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 482
PflFI GACNNNGTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 251
PinAI ACCGGT 2 cut(s) 206, 455
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 2 cut(s) 30, 108
PpsI GAGTC 2 cut(s) 30, 108
Psp124BI GAGCTC 2 cut(s) 264, 337
Psp6I CCWGG 2 cut(s) 497, 523
PspGI CCWGG 2 cut(s) 497, 523
PspN4I GGNNCC 3 cut(s) 201, 327, 454
PspPI GGNCC 1 cut(s) 416
PsyI GACNNNGTC 1 cut(s) 71
SacI GAGCTC 2 cut(s) 264, 337
SatI GCNGC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 2 cut(s) 30, 109
ScrFI CCNGG 6 cut(s) 253, 290, 472, 473, 499, 525
SduI GDGCHC 2 cut(s) 264, 337
SetI ASST 9 cut(s) 72, 126, 216, 264, 300, 331, 337, 513, 526
SexAI ACCWGGT 1 cut(s) 523
SfaNI GCATC 1 cut(s) 361
SgrAI CRCCGGYG 1 cut(s) 455
SmaI CCCGGG 1 cut(s) 473
Sse9I AATT 2 cut(s) 83, 395
SsiI CCGC 5 cut(s) 141, 184, 194, 385, 495
SspMI CTAG 1 cut(s) 330
SstI GAGCTC 2 cut(s) 264, 337
StyD4I CCNGG 6 cut(s) 251, 288, 470, 471, 497, 523
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 34
TasI AATT 2 cut(s) 83, 395
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 482
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspGWI ACGGA 1 cut(s) 93
TspMI CCCGGG 1 cut(s) 471
Tth111I GACNNNGTC 1 cut(s) 71
Van91I CCANNNNNTGG 1 cut(s) 425
XapI RAATTY 1 cut(s) 83
XmaI CCCGGG 1 cut(s) 471
XmiI GTMKAC 1 cut(s) 172
XspI CTAG 1 cut(s) 330
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.