Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000579.1

Orthogroup ID

OG0015727

Physical Location & Seq

Genomic Coordinates Forward (+)

46145 .. 47056

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggaagctgcgaagaatggcattgagttggtgctgctaaccacacccactactacaagagatcgcatgaaagacattgtccaagattcggagggatttgtgtaccaggtcagcacggtgggggttactggagctgttaaagaggcaacaaacaaggcagtggcggttggtttcgggttgtcgacgcctgaacatgtgaagcaggtggcggagtggggggctgatggcgttattgttggcagtgccattttgaaggtattaggtgaagctagatctccattgcaaggggttttcactatggttgatgaggtttcagctcgtttggctgctactcttgctatcatagaggaaggaaggaccttttttggtcaatgggcacaatcggcggtgtctgttaaccattttgctatcgaactatgtccgttatggcgacgcgtacggagaattcgaaggcttttatgggtacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

156

Amino Acids

17.01

Weight (kDa)

7.92

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	3 - 92	2e-24	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015727)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g24820
rosa_chinensis	RchiOBHm_Chr1g0378511 RchiOBHm_Chr4g0436471
rosa_multiflora	Rmu_sc0000579.1_g000008 Rmu_sc0007627.1_g000012 Rmu_sc0007627.1_g000013 Rmu_sc0008712.1_g000012
rosa_roxburghii	Rroxscaffold_1G00021740
rosa_samantha	Rh1AG026300 Rh1AG430600 Rh1BG388500 Rh1DG047400 Rh1DG419600 Rh3BG116100 Rh4DG351000 Rh6AG316700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	182
AccII	CGCG	1 cut(s)	435
AciI	CCGC	3 cut(s)	164, 209, 386
AcsI	RAATTY	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	3 cut(s)	104, 438, 465
AfiI	CCNNNNNNNGG	2 cut(s)	88, 284
AflIII	ACRYGT	2 cut(s)	193, 433
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	4 cut(s)	8, 134, 269, 317
AluI	AGCT	4 cut(s)	8, 134, 269, 317
ApeKI	GCWGC	3 cut(s)	8, 34, 326
ApoI	RAATTY	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	21, 313
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	107
BfaI	CTAG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	272
BisI	GCNGC	3 cut(s)	9, 35, 327
BlsI	GCNGC	3 cut(s)	10, 36, 328
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 284
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	2 cut(s)	88, 284
BseMI	GCAATG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	21, 313
Bsh1236I	CGCG	1 cut(s)	435
BsiWI	CGTACG	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	88, 284
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	61, 272
BspACI	CCGC	3 cut(s)	164, 209, 386
BspFNI	CGCG	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	193
BspT104I	TTCGAA	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	61, 272
BssNI	GRCGYC	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	448
BstFNI	CGCG	1 cut(s)	435
BstKTI	GATC	2 cut(s)	64, 275
BstMBI	GATC	2 cut(s)	61, 272
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 335, 383
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	21, 313
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BtsI	GCAGTG	2 cut(s)	165, 247
BtsIMutI	CAGTG	2 cut(s)	165, 247
BveI	ACCTGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	357
CseI	GACGC	2 cut(s)	193, 441
CsiI	ACCWGGT	1 cut(s)	105
Csp6I	GTAC	3 cut(s)	103, 437, 464
CviAII	CATG	2 cut(s)	67, 194
CviJI	RGCY	7 cut(s)	8, 134, 221, 269, 317, 326, 454
CviKI_1	RGCY	7 cut(s)	8, 134, 221, 269, 317, 326, 454
CviQI	GTAC	3 cut(s)	103, 437, 464
DpnI	GATC	2 cut(s)	63, 274
DpnII	GATC	2 cut(s)	61, 272
EciI	GGCGGA	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	70, 197
FaiI	YATR	7 cut(s)	68, 195, 299, 344, 418, 427, 460
FatI	CATG	2 cut(s)	66, 193
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	3 cut(s)	9, 35, 327
Fsp4HI	GCNGC	3 cut(s)	9, 35, 327
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	3 cut(s)	9, 35, 327
GsuI	CTGGAG	1 cut(s)	150
HgaI	GACGC	2 cut(s)	193, 441
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	70, 197
HincII	GTYRAC	2 cut(s)	183, 397
HindII	GTYRAC	2 cut(s)	183, 397
HinfI	GANTC	1 cut(s)	86
HpaI	GTTAAC	1 cut(s)	397
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	3 cut(s)	103, 183, 397
Hpy188I	TCNGA	1 cut(s)	91
Hpy8I	GTNNAC	3 cut(s)	103, 183, 397
Hpy99I	CGWCG	2 cut(s)	187, 435
HpyAV	CCTTC	4 cut(s)	247, 344, 348, 444
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 335, 383
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	70, 197
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	61, 272
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	5 cut(s)	92, 114, 119, 188, 201
Lsp1109I	GCAGC	2 cut(s)	21, 313
MabI	ACCWGGT	1 cut(s)	105
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	63, 274
MboI	GATC	2 cut(s)	61, 272
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	1 cut(s)	444
MluI	ACGCGT	1 cut(s)	433
MnlI	CCTC	4 cut(s)	85, 136, 301, 340
MseI	TTAA	2 cut(s)	138, 396
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	323, 335, 383
NdeII	GATC	2 cut(s)	61, 272
NlaIII	CATG	2 cut(s)	70, 197
NspI	RCATGY	1 cut(s)	197
NspV	TTCGAA	1 cut(s)	448
PaqCI	CACCTGC	1 cut(s)	193
PciI	ACATGT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	86
Pfl23II	CGTACG	1 cut(s)	436
PflFI	GACNNNGTC	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	10, 36, 328
PpuMI	RGGWCCY	1 cut(s)	357
PscI	ACATGT	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspLI	CGTACG	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	357
PspPPI	RGGWCCY	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	3 cut(s)	104, 438, 465
RsaNI	GTAC	3 cut(s)	103, 437, 464
SalI	GTCGAC	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	138, 396
SatI	GCNGC	3 cut(s)	9, 35, 327
Sau3AI	GATC	2 cut(s)	61, 272
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	379
SexAI	ACCWGGT	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	448
SinI	GGWCC	1 cut(s)	357
Sse9I	AATT	1 cut(s)	444
SsiI	CCGC	3 cut(s)	164, 209, 386
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	182, 411, 448
TasI	AATT	1 cut(s)	444
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	138, 396
Tru9I	TTAA	2 cut(s)	138, 396
TscAI	CASTG	2 cut(s)	165, 247
TseI	GCWGC	3 cut(s)	8, 34, 326
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	2 cut(s)	411, 454
TspRI	CASTG	2 cut(s)	165, 247
Tth111I	GACNNNGTC	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	1 cut(s)	444
XceI	RCATGY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	182
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.