Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000605.1

Orthogroup ID

OG0019509

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 621

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

cttcctctgcaaccaccggagaacaccagtgccgccctctcctcgggctcccccgcctccaccgccgagaagctccagaactacatccgcctcctcaagtcccagctccactctgagctcctctcccgccactccgacctcctctcccatctcgcctccctccagcacgccgaccacgccctctccaccgtccgatcctccgtccacacccgatctgagctctccgaccccctccgctccatcaccgccctcactctccagctctccaacctccacgccacctccgagctcctccaccacaccctccgcctctgcaagaagctctgctacctcgccgccgaccccgagaagatcgatctcgccaaggccgcccagctgcattgcgagatcttggcgttctacgacgagtacgatctctccggcatcgaagtcgttgaggaggagctcggctgggtcagagagaccggcgacaagttgcgcggcgaggccatgaaggcgctggagctagggatggaggggttgaatcagggggaggtggccatcaggttgcaggtgttctccggtggttgcagagggaagaagagagagggagagagagaaggagggagagagaaaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG5

Protein Analysis

206

Amino Acids

22.71

Weight (kDa)

6.07

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG5_N	PF10392	14 - 104	5.5e-10	Conserved oligomeric Golgi complex subunit 5, N-terminal
COG5_C	PF20649	139 - 186	1.4e-06	Conserved oligomeric Golgi complex subunit 5, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019509)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000605.1_g000001 Rmu_sc0000861.1_g000036 Rmu_sc0002886.1_g000005 Rmu_sc0007349.1_g000005
rosa_rugosa	Rorug05G0367200
rosa_samantha	Rh1BG158600 Rh1DG189500 Rh6CG415100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	541
Acc36I	ACCTGC	1 cut(s)	541
AccBSI	CCGCTC	1 cut(s)	237
AccII	CGCG	1 cut(s)	480
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	1 cut(s)	537
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	523
Alw21I	GWGCWC	4 cut(s)	120, 222, 291, 447
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	189
Ama87I	CYCGRG	2 cut(s)	43, 344
AoxI	GGCC	3 cut(s)	366, 486, 537
ApeKI	GCWGC	1 cut(s)	376
AspLEI	GCGC	2 cut(s)	480, 499
AsuHPI	GGTGA	1 cut(s)	235
AvaI	CYCGRG	2 cut(s)	43, 344
BalI	TGGCCA	1 cut(s)	539
BanII	GRGCYC	5 cut(s)	50, 120, 222, 291, 447
BarI	GAAGNNNNNNTAC	2 cut(s)	311, 343
Bbv12I	GWGCWC	4 cut(s)	120, 222, 291, 447
BbvI	GCAGC	1 cut(s)	363
BccI	CCATC	4 cut(s)	156, 248, 505, 548
BcgI	CGANNNNNNTGC	2 cut(s)	412, 446
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	506
BfoI	RGCGCY	1 cut(s)	500
BfuAI	ACCTGC	1 cut(s)	541
BglI	GCCNNNNNGGC	1 cut(s)	494
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	5 cut(s)	33, 336, 369, 377, 481
BlsI	GCNGC	5 cut(s)	34, 337, 370, 378, 482
BmeT110I	CYCGRG	2 cut(s)	43, 344
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpmI	CTGGAG	4 cut(s)	59, 146, 242, 521
BpuEI	CTTGAG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	42, 363
BsaWI	WCCGGW	2 cut(s)	16, 560
BsaXI	ACNNNNNCTCC	8 cut(s)	128, 158, 167, 197, 266, 296, 401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	379
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	42, 363
BseGI	GGATG	2 cut(s)	84, 516
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	2 cut(s)	105, 207
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	7 cut(s)	31, 83, 110, 131, 281, 452, 455
BseXI	GCAGC	1 cut(s)	363
BseYI	CCCAGC	3 cut(s)	102, 372, 450
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	3 cut(s)	368, 488, 539
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	4 cut(s)	120, 222, 291, 447
BsiHKCI	CYCGRG	2 cut(s)	43, 344
BsiSI	CCGG	4 cut(s)	17, 420, 465, 561
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	368, 488, 539
Bso31I	GGTCTC	1 cut(s)	455
BsoBI	CYCGRG	2 cut(s)	43, 344
Bsp1286I	GDGCHC	5 cut(s)	50, 120, 222, 291, 447
Bsp143I	GATC	6 cut(s)	194, 212, 351, 355, 387, 412
BspANI	GGCC	3 cut(s)	368, 488, 539
BspCNI	CTCAG	2 cut(s)	106, 208
BspDI	ATCGAT	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	2 cut(s)	42, 363
BssMI	GATC	6 cut(s)	194, 212, 351, 355, 387, 412
BssT1I	CCWWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	114, 216
BstF5I	GGATG	2 cut(s)	84, 516
BstFNI	CGCG	1 cut(s)	480
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	2 cut(s)	480, 499
BstKTI	GATC	6 cut(s)	197, 215, 354, 358, 390, 415
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	6 cut(s)	194, 212, 351, 355, 387, 412
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 176, 368, 494
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	3 cut(s)	368, 488, 539
BsuTUI	ATCGAT	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	84, 516
BtsIMutI	CAGTG	1 cut(s)	34
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	2 cut(s)	480, 499
Cfr10I	RCCGGY	1 cut(s)	464
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	1 cut(s)	490
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	114, 216
DpnI	GATC	6 cut(s)	196, 214, 353, 357, 389, 414
DpnII	GATC	6 cut(s)	194, 212, 351, 355, 387, 412
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
EciI	GGCGGA	2 cut(s)	77, 296
Ecl136II	GAGCTC	4 cut(s)	118, 220, 289, 445
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	5 cut(s)	50, 120, 222, 291, 447
Eco31I	GGTCTC	1 cut(s)	455
Eco53kI	GAGCTC	4 cut(s)	118, 220, 289, 445
Eco88I	CYCGRG	2 cut(s)	43, 344
EcoICRI	GAGCTC	4 cut(s)	118, 220, 289, 445
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	5 cut(s)	50, 120, 222, 291, 447
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	493
FaiI	YATR	2 cut(s)	491, 619
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	1 cut(s)	489
FauI	CCCGC	2 cut(s)	61, 134
Fnu4HI	GCNGC	5 cut(s)	33, 336, 369, 377, 481
FokI	GGATG	2 cut(s)	71, 523
FriOI	GRGCYC	5 cut(s)	50, 120, 222, 291, 447
Fsp4HI	GCNGC	5 cut(s)	33, 336, 369, 377, 481
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	2 cut(s)	479, 498
GluI	GCNGC	5 cut(s)	33, 336, 369, 377, 481
GsaI	CCCAGC	3 cut(s)	106, 376, 454
GsuI	CTGGAG	4 cut(s)	59, 146, 242, 521
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	3 cut(s)	368, 488, 539
HapII	CCGG	4 cut(s)	17, 420, 465, 561
HhaI	GCGC	2 cut(s)	480, 499
Hin1II	CATG	1 cut(s)	493
Hin6I	GCGC	2 cut(s)	478, 497
HinP1I	GCGC	2 cut(s)	478, 497
HinfI	GANTC	1 cut(s)	523
HpaII	CCGG	4 cut(s)	17, 420, 465, 561
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	7 cut(s)	115, 136, 194, 217, 226, 286, 458
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	2 cut(s)	487, 593
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	5 cut(s)	10, 315, 379, 550, 570
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 176, 368, 494
HpyF3I	CTNAG	2 cut(s)	114, 216
Hsp92II	CATG	1 cut(s)	493
HspAI	GCGC	2 cut(s)	478, 497
Kzo9I	GATC	6 cut(s)	194, 212, 351, 355, 387, 412
LmnI	GCTCC	8 cut(s)	53, 78, 111, 123, 242, 294, 442, 502
Lsp1109I	GCAGC	1 cut(s)	363
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	1 cut(s)	506
MalI	GATC	6 cut(s)	196, 214, 353, 357, 389, 414
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	6 cut(s)	194, 212, 351, 355, 387, 412
MboII	GAAGA	3 cut(s)	361, 589, 592
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	5 cut(s)	50, 120, 222, 291, 447
MlsI	TGGCCA	1 cut(s)	539
MluNI	TGGCCA	1 cut(s)	539
MmeI	TCCRAC	3 cut(s)	159, 249, 291
Mox20I	TGGCCA	1 cut(s)	539
MscI	TGGCCA	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	4 cut(s)	17, 420, 465, 561
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	4 cut(s)	62, 176, 368, 494
NdeII	GATC	6 cut(s)	194, 212, 351, 355, 387, 412
NlaIII	CATG	1 cut(s)	493
NlaIV	GGNNCC	1 cut(s)	49
NmeAIII	GCCGAG	2 cut(s)	91, 426
PaqCI	CACCTGC	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 408
PfeI	GAWTC	1 cut(s)	523
PkrI	GCNGC	5 cut(s)	34, 337, 370, 378, 482
Psp124BI	GAGCTC	4 cut(s)	120, 222, 291, 447
PspFI	CCCAGC	3 cut(s)	102, 372, 450
PspN4I	GGNNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SacI	GAGCTC	4 cut(s)	120, 222, 291, 447
SatI	GCNGC	5 cut(s)	33, 336, 369, 377, 481
Sau3AI	GATC	6 cut(s)	194, 212, 351, 355, 387, 412
SduI	GDGCHC	5 cut(s)	50, 120, 222, 291, 447
SfaNI	GCATC	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	4 cut(s)	120, 222, 291, 447
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	354, 426
TauI	GCSGC	4 cut(s)	35, 338, 371, 483
TfiI	GAWTC	1 cut(s)	523
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.