Rmu_sc0002886.1_g000005

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002886.1
OG0019509
Physical Location & Seq
Forward (+)
17092 .. 18217
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002886.1_g000005.1.cds

Sequence Viewer

Length: 672 bp
ctggagaacaccagtgccgccctctcctcggggtcccccgcctccaccgctgagaagctccagaacgccatccgcctcctcaagtcccagctccgctccgagctcctctcccgccactccgacctcctctcccatctctcctccctccagcccaccgaccacgccctctccaccgtccgatcctccgtccacacccgatctgagctctccgaccccctccgctccatcaccgccctcgctctccagctctccaacctccacgccagctccgagctcctccaccaccccctccgcctctccaagaagctctgcgacctcgccgccgaccccgagaagatcgatctcgccaaggccacccagctgcattgcgagatcttggcgttctacgacgagtacgatctctccggcatcgaagtcgttgaggaggagctcggctgggtcagagagaccggcgacaagttgcgcagcgaggccatgaaggcgttggagctagggatggaggggttgaatcagggggaggtggccatcaggttacaggtgttctccagtggttgcagagggaagaagagagagggagcgagagatgttgcagtctggaaagattctgttaatgcttcaatccattccttgtcatcacctaataagcctaaaacttggcaagcttcttggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG5

Protein Analysis

223

Amino Acids

24.48

Weight (kDa)

6.33

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 464
AccBSI CCGCTC 2 cut(s) 96, 222
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 522
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 2 cut(s) 508, 618
Alw21I GWGCWC 4 cut(s) 105, 207, 276, 432
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 1 cut(s) 174
Ama87I CYCGRG 2 cut(s) 28, 329
AoxI GGCC 3 cut(s) 351, 471, 522
ApeKI GCWGC 2 cut(s) 361, 465
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 220, 627
AvaI CYCGRG 2 cut(s) 28, 329
AvaII GGWCC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 524
BanII GRGCYC 4 cut(s) 105, 207, 276, 432
Bbv12I GWGCWC 4 cut(s) 105, 207, 276, 432
BbvI GCAGC 2 cut(s) 348, 477
BccI CCATC 5 cut(s) 77, 141, 233, 490, 533
BcgI CGANNNNNNTGC 2 cut(s) 397, 431
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 1 cut(s) 491
BglI GCCNNNNNGGC 1 cut(s) 479
BglII AGATCT 1 cut(s) 372
BisI GCNGC 4 cut(s) 18, 321, 362, 466
BlsI GCNGC 4 cut(s) 19, 322, 363, 467
Bme18I GGWCC 1 cut(s) 33
BmeT110I CYCGRG 2 cut(s) 28, 329
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 34, 35
BmsI GCATC 1 cut(s) 417
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 5 cut(s) 23, 44, 131, 227, 529
BpuEI CTTGAG 1 cut(s) 65
Bsa29I ATCGAT 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 27, 348
BsaXI ACNNNNNCTCC 8 cut(s) 113, 143, 152, 182, 251, 281, 386, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 2 cut(s) 12, 546
Bse3DI GCAATG 1 cut(s) 364
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 27, 348
BseGI GGATG 2 cut(s) 69, 501
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 2 cut(s) 42, 192
BseNI ACTGG 2 cut(s) 12, 546
BseRI GAGGAG 8 cut(s) 16, 68, 95, 116, 130, 266, 437, 440
BseXI GCAGC 2 cut(s) 348, 477
BseYI CCCAGC 3 cut(s) 87, 357, 435
BshFI GGCC 3 cut(s) 353, 473, 524
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 4 cut(s) 105, 207, 276, 432
BsiHKCI CYCGRG 2 cut(s) 28, 329
BsiSI CCGG 2 cut(s) 405, 450
BslFI GGGAC 2 cut(s) 19, 70
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 440
BsmFI GGGAC 2 cut(s) 19, 70
BsnI GGCC 3 cut(s) 353, 473, 524
Bso31I GGTCTC 1 cut(s) 440
BsoBI CYCGRG 2 cut(s) 28, 329
Bsp1286I GDGCHC 4 cut(s) 105, 207, 276, 432
Bsp143I GATC 6 cut(s) 179, 197, 336, 340, 372, 397
BspANI GGCC 3 cut(s) 353, 473, 524
BspCNI CTCAG 2 cut(s) 43, 193
BspDI ATCGAT 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 34, 35
BspPI GGATC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 440
BsrBI CCGCTC 2 cut(s) 96, 222
BsrDI GCAATG 1 cut(s) 364
BsrFI RCCGGY 1 cut(s) 449
BsrI ACTGG 2 cut(s) 12, 546
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 2 cut(s) 27, 348
BssMI GATC 6 cut(s) 179, 197, 336, 340, 372, 397
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 265, 660
BstDEI CTNAG 2 cut(s) 51, 201
BstF5I GGATG 2 cut(s) 69, 501
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 6 cut(s) 182, 200, 339, 343, 375, 400
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 6 cut(s) 179, 197, 336, 340, 372, 397
BstMWI GCNNNNNNNGC 2 cut(s) 47, 479
BstV1I GCAGC 2 cut(s) 348, 477
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 3 cut(s) 353, 473, 524
BsuTUI ATCGAT 1 cut(s) 339
BtsCI GGATG 2 cut(s) 69, 501
BtsIMutI CAGTG 2 cut(s) 19, 553
Cac8I GCNNGC 2 cut(s) 265, 660
CfoI GCGC 1 cut(s) 465
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 1 cut(s) 33
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 1 cut(s) 394
CviAII CATG 1 cut(s) 475
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 2 cut(s) 51, 201
DpnI GATC 6 cut(s) 181, 199, 338, 342, 374, 399
DpnII GATC 6 cut(s) 179, 197, 336, 340, 372, 397
EaeI YGGCCR 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
EciI GGCGGA 2 cut(s) 62, 281
Ecl136II GAGCTC 4 cut(s) 103, 205, 274, 430
Eco130I CCWWGG 1 cut(s) 348
Eco24I GRGCYC 4 cut(s) 105, 207, 276, 432
Eco31I GGTCTC 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 33
Eco53kI GAGCTC 4 cut(s) 103, 205, 274, 430
Eco88I CYCGRG 2 cut(s) 28, 329
EcoICRI GAGCTC 4 cut(s) 103, 205, 274, 430
EcoO109I RGGNCCY 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 348
EcoT38I GRGCYC 4 cut(s) 105, 207, 276, 432
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 478
FaiI YATR 1 cut(s) 476
FaqI GGGAC 2 cut(s) 19, 70
FatI CATG 1 cut(s) 474
FauI CCCGC 2 cut(s) 46, 119
Fnu4HI GCNGC 4 cut(s) 18, 321, 362, 466
FokI GGATG 2 cut(s) 56, 508
FriOI GRGCYC 4 cut(s) 105, 207, 276, 432
Fsp4HI GCNGC 4 cut(s) 18, 321, 362, 466
FspBI CTAG 1 cut(s) 491
FspI TGCGCA 1 cut(s) 464
GlaI GCGC 1 cut(s) 464
GluI GCNGC 4 cut(s) 18, 321, 362, 466
GsaI CCCAGC 3 cut(s) 91, 361, 439
GsuI CTGGAG 5 cut(s) 23, 44, 131, 227, 529
HaeIII GGCC 3 cut(s) 353, 473, 524
HapII CCGG 2 cut(s) 405, 450
HhaI GCGC 1 cut(s) 465
Hin1II CATG 1 cut(s) 478
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 660
HinfI GANTC 2 cut(s) 508, 602
HpaII CCGG 2 cut(s) 405, 450
HphI GGTGA 2 cut(s) 220, 627
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 7 cut(s) 100, 121, 179, 202, 211, 271, 443
Hpy188III TCNNGA 2 cut(s) 61, 595
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 364, 555, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 479
HpyF3I CTNAG 2 cut(s) 51, 201
Hsp92II CATG 1 cut(s) 478
HspAI GCGC 1 cut(s) 463
KflI GGGWCCC 1 cut(s) 33
Kzo9I GATC 6 cut(s) 179, 197, 336, 340, 372, 397
Lsp1109I GCAGC 2 cut(s) 348, 477
LweI GCATC 1 cut(s) 417
MaeI CTAG 1 cut(s) 491
MaeIII GTNAC 1 cut(s) 531
MalI GATC 6 cut(s) 181, 199, 338, 342, 374, 399
MbiI CCGCTC 2 cut(s) 96, 222
MboI GATC 6 cut(s) 179, 197, 336, 340, 372, 397
MboII GAAGA 3 cut(s) 346, 574, 577
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 4 cut(s) 105, 207, 276, 432
MlsI TGGCCA 1 cut(s) 524
MluNI TGGCCA 1 cut(s) 524
MmeI TCCRAC 4 cut(s) 144, 234, 276, 465
Mox20I TGGCCA 1 cut(s) 524
MscI TGGCCA 1 cut(s) 524
MseI TTAA 1 cut(s) 609
Msp20I TGGCCA 1 cut(s) 524
MspA1I CMGCKG 2 cut(s) 50, 361
MspI CCGG 2 cut(s) 405, 450
MwoI GCNNNNNNNGC 2 cut(s) 47, 479
NdeII GATC 6 cut(s) 179, 197, 336, 340, 372, 397
NlaIII CATG 1 cut(s) 478
NlaIV GGNNCC 2 cut(s) 34, 35
NmeAIII GCCGAG 1 cut(s) 411
NsbI TGCGCA 1 cut(s) 464
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 393
PfeI GAWTC 2 cut(s) 508, 602
PkrI GCNGC 4 cut(s) 19, 322, 363, 467
PpuMI RGGWCCY 1 cut(s) 33
Psp124BI GAGCTC 4 cut(s) 105, 207, 276, 432
Psp5II RGGWCCY 1 cut(s) 33
PspFI CCCAGC 3 cut(s) 87, 357, 435
PspN4I GGNNCC 2 cut(s) 34, 35
PspPI GGNCC 1 cut(s) 33
PspPPI RGGWCCY 1 cut(s) 33
PsuI RGATCY 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SacI GAGCTC 4 cut(s) 105, 207, 276, 432
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 4 cut(s) 18, 321, 362, 466
Sau3AI GATC 6 cut(s) 179, 197, 336, 340, 372, 397
Sau96I GGNCC 1 cut(s) 33
SduI GDGCHC 4 cut(s) 105, 207, 276, 432
SfaNI GCATC 1 cut(s) 417
SinI GGWCC 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SspMI CTAG 1 cut(s) 491
SstI GAGCTC 4 cut(s) 105, 207, 276, 432
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 339, 411
TauI GCSGC 2 cut(s) 20, 323
TfiI GAWTC 2 cut(s) 508, 602
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TscAI CASTG 2 cut(s) 19, 553
TseI GCWGC 2 cut(s) 361, 465
TspDTI ATGAA 1 cut(s) 491
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 2 cut(s) 19, 553
VpaK11BI GGWCC 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XspI CTAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.