Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000861.1

Orthogroup ID

OG0019509

Physical Location & Seq

Genomic Coordinates Reverse (-)

164949 .. 165653

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000861.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ctggccacacggtctctctctctctccctcgatctctcttcttcttctcttcctctgcaaccaccggagaacaccagtgccgccctctcctcgggctcccccgcctccaccgccgagaagctccagaacgccatccgcctcctcaagtcccagctccgctccgagctcctctcccgccactccgacctcctctcccatctctcctccctccagcacgccgaccacgccctctccaccgtccgatcctccgtccacacccgatctgagctctccgaccccctccgctccatcaccgccctcactctccagctctccaacctccacgccacctccgagctcctccaccacacctccgagctcctccaccacaccctctgcctctccaagaagctctgcgacctcgccgccgaccccgagaagatcgatctcgccaaggccgcccagctgcattgggagatcttggcgttctacgacgagtacgatctctccggcatcgaagtcgttgaggaggagctcggctgggtcagagagaccggcgacaagttgcgcggcgaggccatgaaggcgttggagctagggatggaggggttgaatcagtgggaggtggccatcaggttgcaggtgttctccggtggttgcagagggaagaagagagagggagcgagaggtcagggggagagagaaggagggagagagaaaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG5

Protein Analysis

234

Amino Acids

25.65

Weight (kDa)

6.01

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019509)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000605.1_g000001 Rmu_sc0000861.1_g000036 Rmu_sc0002886.1_g000005 Rmu_sc0007349.1_g000005
rosa_rugosa	Rorug05G0367200
rosa_samantha	Rh1BG158600 Rh1DG189500 Rh6CG415100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	610
Acc36I	ACCTGC	1 cut(s)	610
AccBSI	CCGCTC	2 cut(s)	159, 285
AccII	CGCG	1 cut(s)	549
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	2 cut(s)	3, 606
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	592
Alw21I	GWGCWC	5 cut(s)	168, 270, 339, 360, 516
Alw26I	GTCTC	2 cut(s)	18, 524
AlwI	GGATC	1 cut(s)	237
Ama87I	CYCGRG	2 cut(s)	91, 413
AoxI	GGCC	4 cut(s)	3, 435, 555, 606
ApeKI	GCWGC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	2 cut(s)	91, 413
BalI	TGGCCA	2 cut(s)	5, 608
BanII	GRGCYC	6 cut(s)	98, 168, 270, 339, 360, 516
Bbv12I	GWGCWC	5 cut(s)	168, 270, 339, 360, 516
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	5 cut(s)	140, 204, 296, 574, 617
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BcoDI	GTCTC	2 cut(s)	18, 524
BfaI	CTAG	1 cut(s)	575
BfuAI	ACCTGC	1 cut(s)	610
BglI	GCCNNNNNGGC	1 cut(s)	563
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	5 cut(s)	81, 405, 438, 446, 550
BlsI	GCNGC	5 cut(s)	82, 406, 439, 447, 551
BmeT110I	CYCGRG	2 cut(s)	91, 413
BmiI	GGNNCC	1 cut(s)	97
BmsI	GCATC	1 cut(s)	501
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	3 cut(s)	107, 194, 290
BpuEI	CTTGAG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	423
BsaI	GGTCTC	2 cut(s)	18, 524
BsaJI	CCNNGG	2 cut(s)	90, 432
BsaWI	WCCGGW	2 cut(s)	64, 629
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	75
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	90, 432
BseGI	GGATG	2 cut(s)	132, 585
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	9 cut(s)	79, 131, 158, 179, 193, 329, 350, 521, 524
BseXI	GCAGC	1 cut(s)	432
BseYI	CCCAGC	3 cut(s)	150, 441, 519
Bsh1236I	CGCG	1 cut(s)	549
BshFI	GGCC	4 cut(s)	5, 437, 557, 608
BshVI	ATCGAT	1 cut(s)	423
BsiHKAI	GWGCWC	5 cut(s)	168, 270, 339, 360, 516
BsiHKCI	CYCGRG	2 cut(s)	91, 413
BsiSI	CCGG	4 cut(s)	65, 489, 534, 630
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	18, 524
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	4 cut(s)	5, 437, 557, 608
Bso31I	GGTCTC	2 cut(s)	18, 524
BsoBI	CYCGRG	2 cut(s)	91, 413
Bsp1286I	GDGCHC	6 cut(s)	98, 168, 270, 339, 360, 516
Bsp143I	GATC	7 cut(s)	31, 242, 260, 420, 424, 456, 481
BspANI	GGCC	4 cut(s)	5, 437, 557, 608
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	423
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	1 cut(s)	237
BspTNI	GGTCTC	2 cut(s)	18, 524
BsrBI	CCGCTC	2 cut(s)	159, 285
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	75
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	2 cut(s)	90, 432
BssMI	GATC	7 cut(s)	31, 242, 260, 420, 424, 456, 481
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	12, 238
Bst6I	CTCTTC	3 cut(s)	43, 54, 644
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	132, 585
BstFNI	CGCG	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	7 cut(s)	34, 245, 263, 423, 427, 459, 484
BstMAI	GTCTC	2 cut(s)	18, 524
BstMBI	GATC	7 cut(s)	31, 242, 260, 420, 424, 456, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 224, 437, 563
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	423
BsuRI	GGCC	4 cut(s)	5, 437, 557, 608
BsuTUI	ATCGAT	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	132, 585
BtsIMutI	CAGTG	2 cut(s)	82, 602
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	549
Cfr10I	RCCGGY	1 cut(s)	533
ClaI	ATCGAT	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	1 cut(s)	559
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	7 cut(s)	33, 244, 262, 422, 426, 458, 483
DpnII	GATC	7 cut(s)	31, 242, 260, 420, 424, 456, 481
EaeI	YGGCCR	2 cut(s)	3, 606
Eam1104I	CTCTTC	3 cut(s)	43, 54, 644
EarI	CTCTTC	3 cut(s)	43, 54, 644
EciI	GGCGGA	1 cut(s)	125
Ecl136II	GAGCTC	5 cut(s)	166, 268, 337, 358, 514
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	6 cut(s)	98, 168, 270, 339, 360, 516
Eco31I	GGTCTC	2 cut(s)	18, 524
Eco53kI	GAGCTC	5 cut(s)	166, 268, 337, 358, 514
Eco88I	CYCGRG	2 cut(s)	91, 413
EcoICRI	GAGCTC	5 cut(s)	166, 268, 337, 358, 514
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	6 cut(s)	98, 168, 270, 339, 360, 516
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	1 cut(s)	562
FaiI	YATR	2 cut(s)	560, 703
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	1 cut(s)	558
FauI	CCCGC	2 cut(s)	109, 182
Fnu4HI	GCNGC	5 cut(s)	81, 405, 438, 446, 550
FokI	GGATG	2 cut(s)	119, 592
FriOI	GRGCYC	6 cut(s)	98, 168, 270, 339, 360, 516
Fsp4HI	GCNGC	5 cut(s)	81, 405, 438, 446, 550
FspBI	CTAG	1 cut(s)	575
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	5 cut(s)	81, 405, 438, 446, 550
GsaI	CCCAGC	3 cut(s)	154, 445, 523
GsuI	CTGGAG	3 cut(s)	107, 194, 290
HaeIII	GGCC	4 cut(s)	5, 437, 557, 608
HapII	CCGG	4 cut(s)	65, 489, 534, 630
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	1 cut(s)	562
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HinfI	GANTC	1 cut(s)	592
HpaII	CCGG	4 cut(s)	65, 489, 534, 630
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	8 cut(s)	163, 184, 242, 265, 274, 334, 355, 527
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	2 cut(s)	556, 677
HpyCH4III	ACNGT	2 cut(s)	12, 238
HpyCH4V	TGCA	4 cut(s)	58, 448, 619, 639
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 224, 437, 563
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	562
HspAI	GCGC	1 cut(s)	547
Kzo9I	GATC	7 cut(s)	31, 242, 260, 420, 424, 456, 481
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	1 cut(s)	575
MalI	GATC	7 cut(s)	33, 244, 262, 422, 426, 458, 483
MbiI	CCGCTC	2 cut(s)	159, 285
MboI	GATC	7 cut(s)	31, 242, 260, 420, 424, 456, 481
MboII	GAAGA	7 cut(s)	30, 33, 36, 41, 430, 658, 661
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	6 cut(s)	98, 168, 270, 339, 360, 516
MlsI	TGGCCA	2 cut(s)	5, 608
MluNI	TGGCCA	2 cut(s)	5, 608
MmeI	TCCRAC	4 cut(s)	207, 297, 339, 549
Mox20I	TGGCCA	2 cut(s)	5, 608
MscI	TGGCCA	2 cut(s)	5, 608
Msp20I	TGGCCA	2 cut(s)	5, 608
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	4 cut(s)	65, 489, 534, 630
MvnI	CGCG	1 cut(s)	549
MwoI	GCNNNNNNNGC	4 cut(s)	110, 224, 437, 563
NdeII	GATC	7 cut(s)	31, 242, 260, 420, 424, 456, 481
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	1 cut(s)	97
NmeAIII	GCCGAG	2 cut(s)	139, 495
PaqCI	CACCTGC	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 477
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	5 cut(s)	82, 406, 439, 447, 551
Psp124BI	GAGCTC	5 cut(s)	168, 270, 339, 360, 516
PspFI	CCCAGC	3 cut(s)	150, 441, 519
PspN4I	GGNNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	456
PvuII	CAGCTG	1 cut(s)	445
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SacI	GAGCTC	5 cut(s)	168, 270, 339, 360, 516
SatI	GCNGC	5 cut(s)	81, 405, 438, 446, 550
Sau3AI	GATC	7 cut(s)	31, 242, 260, 420, 424, 456, 481
SduI	GDGCHC	6 cut(s)	98, 168, 270, 339, 360, 516
SfaNI	GCATC	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SspMI	CTAG	1 cut(s)	575
SstI	GAGCTC	5 cut(s)	168, 270, 339, 360, 516
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	12, 238
TaqI	TCGA	3 cut(s)	30, 423, 495
TauI	GCSGC	4 cut(s)	83, 407, 440, 552
TfiI	GAWTC	1 cut(s)	592
TscAI	CASTG	2 cut(s)	82, 602
TseI	GCWGC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	575
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	2 cut(s)	82, 602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.