Rmu_sc0007349.1_g000005

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007349.1
OG0019509
Physical Location & Seq
Forward (+)
25257 .. 26749
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007349.1_g000005.1.cds

Sequence Viewer

Length: 960 bp
ctggccacacggtctctctctctctctctctccctcgccctctcttcttcttctcttcctctgcaaccaccggagaacaccagtgccgccctctcctcgggctcccccgcctccaccgctgagaagctccagaacgccatccgcctcctcaagtcccagctccgctccgagctcctctcccgccactccgacctcctctcccatctctcctccctccagcacgccgaccacgccctctccaccgtccgatcctccgtccacacccgatctgagctctccgaccccctccgctccatcaccgccctcactctccagctctccaacctccacgccacctccgagctcctccaccacacctccgagctcctccaccacaccctctgcctctccaagaagctctgcgacctcgccgccgaccccgagaagatcgatctcgccaaggccgcccagctgcattacgagatcttggcgttctacgacgagtacgatctctccggcatcaaagtcgttgaggaggagctcggctgggtcagagagaccggcgacaagttgcgcggcgaggccatgaaggcgttggagctagggatggaggggttgaatcagagggaggtggccatcaggttgcaggtgttctccggtggttgtagagggaagaagagagagggagcgagagatacctccgccgcacaacttgaagatctcaaccccaggagcccagaaccggcggcgccacctccagaaccggccggaacaaccccgaaccggcctccagaagtgacgaaagtcttcctgcccggctcaaagcctttcgctcagcttcttacaacaatactccaccatcagaagctcctcgaccccagatccccagaaccggaaacctcatcaccggaatcggcctataagtacccactacaaaaaagaattcaaattgccacggcgttgtgccatcgcggaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG5

Protein Analysis

319

Amino Acids

34.81

Weight (kDa)

7.0

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 616
Acc36I ACCTGC 1 cut(s) 616
AccB1I GGYRCC 1 cut(s) 727
AccBSI CCGCTC 2 cut(s) 165, 291
AccII CGCG 2 cut(s) 555, 951
AclWI GGATC 2 cut(s) 243, 855
AcoI YGGCCR 3 cut(s) 3, 612, 744
AcsI RAATTY 1 cut(s) 921
AcyI GRCGYC 1 cut(s) 728
AfaI GTAC 2 cut(s) 485, 905
AfiI CCNNNNNNNGG 4 cut(s) 97, 721, 762, 871
AgsI TTSAA 3 cut(s) 598, 695, 926
AjnI CCWGG 1 cut(s) 707
Alw21I GWGCWC 5 cut(s) 174, 276, 345, 366, 522
Alw26I GTCTC 2 cut(s) 18, 530
AlwI GGATC 2 cut(s) 243, 855
Ama87I CYCGRG 2 cut(s) 97, 419
AoxI GGCC 7 cut(s) 3, 441, 561, 612, 744, 764, 894
ApeKI GCWGC 1 cut(s) 451
ApoI RAATTY 1 cut(s) 921
Asp700I GAANNNNTTC 1 cut(s) 785
AspLEI GCGC 2 cut(s) 555, 730
AsuC2I CCSGG 1 cut(s) 795
AsuHPI GGTGA 2 cut(s) 289, 876
AvaI CYCGRG 2 cut(s) 97, 419
BalI TGGCCA 2 cut(s) 5, 614
BanI GGYRCC 1 cut(s) 727
BanII GRGCYC 7 cut(s) 104, 174, 276, 345, 366, 522, 716
BbsI GAAGAC 1 cut(s) 778
Bbv12I GWGCWC 5 cut(s) 174, 276, 345, 366, 522
BbvI GCAGC 1 cut(s) 438
BccI CCATC 7 cut(s) 146, 210, 302, 580, 623, 846, 954
BceAI ACGGC 1 cut(s) 951
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BciT130I CCWGG 1 cut(s) 709
BcnI CCSGG 1 cut(s) 795
BcoDI GTCTC 2 cut(s) 18, 530
BfaI CTAG 1 cut(s) 581
BfoI RGCGCY 1 cut(s) 731
BfuAI ACCTGC 1 cut(s) 616
BglI GCCNNNNNGGC 1 cut(s) 569
BglII AGATCT 2 cut(s) 462, 697
BisI GCNGC 7 cut(s) 87, 411, 444, 452, 556, 684, 726
BlpI GCTNAGC 1 cut(s) 813
BlsI GCNGC 7 cut(s) 88, 412, 445, 453, 557, 685, 727
Bme1390I CCNGG 2 cut(s) 709, 795
BmeT110I CYCGRG 2 cut(s) 97, 419
BmiI GGNNCC 3 cut(s) 103, 713, 729
BmrFI CCNGG 2 cut(s) 709, 795
BmsI GCATC 1 cut(s) 507
BoxI GACNNNNGTC 1 cut(s) 782
BpiI GAAGAC 1 cut(s) 778
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 5 cut(s) 113, 200, 296, 720, 753
Bpu1102I GCTNAGC 1 cut(s) 813
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 795
Bsa29I ATCGAT 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 728
BsaI GGTCTC 2 cut(s) 18, 530
BsaJI CCNNGG 4 cut(s) 96, 438, 707, 933
BsaWI WCCGGW 4 cut(s) 70, 635, 871, 886
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 721, 762, 871
Bse118I RCCGGY 4 cut(s) 539, 721, 742, 762
Bse1I ACTGG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 709
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 4 cut(s) 96, 438, 707, 933
BseGI GGATG 2 cut(s) 138, 591
BseLI CCNNNNNNNGG 4 cut(s) 97, 721, 762, 871
BseMII CTCAG 3 cut(s) 111, 261, 827
BseNI ACTGG 1 cut(s) 81
BseX3I CGGCCG 1 cut(s) 744
BseXI GCAGC 1 cut(s) 438
BseYI CCCAGC 3 cut(s) 156, 447, 525
Bsh1236I CGCG 2 cut(s) 555, 951
Bsh1285I CGRYCG 1 cut(s) 747
BshFI GGCC 7 cut(s) 5, 443, 563, 614, 746, 766, 896
BshNI GGYRCC 1 cut(s) 727
BshVI ATCGAT 1 cut(s) 429
BsiEI CGRYCG 1 cut(s) 747
BsiHKAI GWGCWC 5 cut(s) 174, 276, 345, 366, 522
BsiHKCI CYCGRG 2 cut(s) 97, 419
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 4 cut(s) 97, 721, 762, 871
BsmAI GTCTC 2 cut(s) 18, 530
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 7 cut(s) 5, 443, 563, 614, 746, 766, 896
Bso31I GGTCTC 2 cut(s) 18, 530
BsoBI CYCGRG 2 cut(s) 97, 419
Bsp1286I GDGCHC 7 cut(s) 104, 174, 276, 345, 366, 522, 716
Bsp143I GATC 8 cut(s) 248, 266, 426, 430, 462, 487, 697, 860
Bsp1720I GCTNAGC 1 cut(s) 813
BspANI GGCC 7 cut(s) 5, 443, 563, 614, 746, 766, 896
BspCNI CTCAG 3 cut(s) 112, 262, 826
BspDI ATCGAT 1 cut(s) 429
BspFNI CGCG 2 cut(s) 555, 951
BspLI GGNNCC 3 cut(s) 103, 713, 729
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 2 cut(s) 243, 855
BspT107I GGYRCC 1 cut(s) 727
BspTNI GGTCTC 2 cut(s) 18, 530
BsrBI CCGCTC 2 cut(s) 165, 291
BsrFI RCCGGY 4 cut(s) 539, 721, 742, 762
BsrI ACTGG 1 cut(s) 81
BssAI RCCGGY 4 cut(s) 539, 721, 742, 762
BssECI CCNNGG 4 cut(s) 96, 438, 707, 933
BssMI GATC 8 cut(s) 248, 266, 426, 430, 462, 487, 697, 860
BssNI GRCGYC 1 cut(s) 728
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 709
Bst4CI ACNGT 2 cut(s) 12, 244
Bst6I CTCTTC 3 cut(s) 49, 60, 650
BstACI GRCGYC 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 3 cut(s) 120, 270, 813
BstDSI CCRYGG 1 cut(s) 933
BstF5I GGATG 2 cut(s) 138, 591
BstFNI CGCG 2 cut(s) 555, 951
BstH2I RGCGCY 1 cut(s) 731
BstHHI GCGC 2 cut(s) 555, 730
BstKTI GATC 8 cut(s) 251, 269, 429, 433, 465, 490, 700, 863
BstMAI GTCTC 2 cut(s) 18, 530
BstMBI GATC 8 cut(s) 248, 266, 426, 430, 462, 487, 697, 860
BstMCI CGRYCG 1 cut(s) 747
BstMWI GCNNNNNNNGC 4 cut(s) 116, 230, 443, 569
BstNI CCWGG 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 782
BstSCI CCNGG 2 cut(s) 707, 793
BstUI CGCG 2 cut(s) 555, 951
BstV1I GCAGC 1 cut(s) 438
BstV2I GAAGAC 1 cut(s) 778
BstX2I RGATCY 3 cut(s) 462, 697, 860
BstYI RGATCY 3 cut(s) 462, 697, 860
BstZI CGGCCG 1 cut(s) 744
Bsu15I ATCGAT 1 cut(s) 429
BsuRI GGCC 7 cut(s) 5, 443, 563, 614, 746, 766, 896
BsuTUI ATCGAT 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 933
BtgZI GCGATG 1 cut(s) 932
BtsCI GGATG 2 cut(s) 138, 591
BtsIMutI CAGTG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 222
CfoI GCGC 2 cut(s) 555, 730
Cfr10I RCCGGY 4 cut(s) 539, 721, 742, 762
ClaI ATCGAT 1 cut(s) 429
Csp6I GTAC 2 cut(s) 484, 904
CviAII CATG 1 cut(s) 565
CviQI GTAC 2 cut(s) 484, 904
DdeI CTNAG 3 cut(s) 120, 270, 813
DinI GGCGCC 1 cut(s) 729
DpnI GATC 8 cut(s) 250, 268, 428, 432, 464, 489, 699, 862
DpnII GATC 8 cut(s) 248, 266, 426, 430, 462, 487, 697, 860
EaeI YGGCCR 3 cut(s) 3, 612, 744
EagI CGGCCG 1 cut(s) 744
Eam1104I CTCTTC 3 cut(s) 49, 60, 650
EarI CTCTTC 3 cut(s) 49, 60, 650
EciI GGCGGA 2 cut(s) 131, 670
Ecl136II GAGCTC 5 cut(s) 172, 274, 343, 364, 520
EclXI CGGCCG 1 cut(s) 744
Eco130I CCWWGG 1 cut(s) 438
Eco24I GRGCYC 7 cut(s) 104, 174, 276, 345, 366, 522, 716
Eco31I GGTCTC 2 cut(s) 18, 530
Eco52I CGGCCG 1 cut(s) 744
Eco53kI GAGCTC 5 cut(s) 172, 274, 343, 364, 520
Eco88I CYCGRG 2 cut(s) 97, 419
EcoICRI GAGCTC 5 cut(s) 172, 274, 343, 364, 520
EcoRI GAATTC 1 cut(s) 921
EcoRII CCWGG 1 cut(s) 707
EcoT14I CCWWGG 1 cut(s) 438
EcoT38I GRGCYC 7 cut(s) 104, 174, 276, 345, 366, 522, 716
EgeI GGCGCC 1 cut(s) 729
EheI GGCGCC 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 1 cut(s) 568
FaiI YATR 2 cut(s) 566, 900
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 564
FauI CCCGC 2 cut(s) 115, 188
Fnu4HI GCNGC 7 cut(s) 87, 411, 444, 452, 556, 684, 726
FokI GGATG 2 cut(s) 125, 598
FriOI GRGCYC 7 cut(s) 104, 174, 276, 345, 366, 522, 716
Fsp4HI GCNGC 7 cut(s) 87, 411, 444, 452, 556, 684, 726
FspBI CTAG 1 cut(s) 581
GlaI GCGC 2 cut(s) 554, 729
GluI GCNGC 7 cut(s) 87, 411, 444, 452, 556, 684, 726
GsaI CCCAGC 3 cut(s) 160, 451, 529
GsuI CTGGAG 5 cut(s) 113, 200, 296, 720, 753
HaeII RGCGCY 1 cut(s) 731
HaeIII GGCC 7 cut(s) 5, 443, 563, 614, 746, 766, 896
HhaI GCGC 2 cut(s) 555, 730
Hin1I GRCGYC 1 cut(s) 728
Hin1II CATG 1 cut(s) 568
Hin6I GCGC 2 cut(s) 553, 728
HinP1I GCGC 2 cut(s) 553, 728
HinfI GANTC 2 cut(s) 598, 890
HphI GGTGA 2 cut(s) 289, 876
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 130, 737, 770
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 2 cut(s) 12, 244
HpyCH4V TGCA 3 cut(s) 64, 454, 625
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 230, 443, 569
HpyF3I CTNAG 3 cut(s) 120, 270, 813
Hsp92I GRCGYC 1 cut(s) 728
Hsp92II CATG 1 cut(s) 568
HspAI GCGC 2 cut(s) 553, 728
KasI GGCGCC 1 cut(s) 727
Kzo9I GATC 8 cut(s) 248, 266, 426, 430, 462, 487, 697, 860
Lsp1109I GCAGC 1 cut(s) 438
LweI GCATC 1 cut(s) 507
MaeI CTAG 1 cut(s) 581
MaeIII GTNAC 1 cut(s) 775
MalI GATC 8 cut(s) 250, 268, 428, 432, 464, 489, 699, 862
MbiI CCGCTC 2 cut(s) 165, 291
MboI GATC 8 cut(s) 248, 266, 426, 430, 462, 487, 697, 860
MboII GAAGA 9 cut(s) 36, 39, 42, 47, 436, 664, 667, 707, 778
MflI RGATCY 3 cut(s) 462, 697, 860
MhlI GDGCHC 7 cut(s) 104, 174, 276, 345, 366, 522, 716
MlsI TGGCCA 2 cut(s) 5, 614
MluCI AATT 2 cut(s) 921, 927
MluNI TGGCCA 2 cut(s) 5, 614
Mly113I GGCGCC 1 cut(s) 728
MmeI TCCRAC 4 cut(s) 213, 303, 345, 555
Mox20I TGGCCA 2 cut(s) 5, 614
MroXI GAANNNNTTC 1 cut(s) 785
MscI TGGCCA 2 cut(s) 5, 614
Msp20I TGGCCA 2 cut(s) 5, 614
MspA1I CMGCKG 2 cut(s) 119, 451
MspR9I CCNGG 2 cut(s) 709, 795
MvaI CCWGG 1 cut(s) 709
MvnI CGCG 2 cut(s) 555, 951
MwoI GCNNNNNNNGC 4 cut(s) 116, 230, 443, 569
NarI GGCGCC 1 cut(s) 728
NciI CCSGG 1 cut(s) 795
NdeII GATC 8 cut(s) 248, 266, 426, 430, 462, 487, 697, 860
NlaIII CATG 1 cut(s) 568
NlaIV GGNNCC 3 cut(s) 103, 713, 729
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 775
PaqCI CACCTGC 1 cut(s) 616
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 483
PdmI GAANNNNTTC 1 cut(s) 785
PfeI GAWTC 2 cut(s) 598, 890
PkrI GCNGC 7 cut(s) 88, 412, 445, 453, 557, 685, 727
PluTI GGCGCC 1 cut(s) 731
PshAI GACNNNNGTC 1 cut(s) 782
Psp124BI GAGCTC 5 cut(s) 174, 276, 345, 366, 522
Psp6I CCWGG 1 cut(s) 707
PspFI CCCAGC 3 cut(s) 156, 447, 525
PspGI CCWGG 1 cut(s) 707
PspN4I GGNNCC 3 cut(s) 103, 713, 729
PsuI RGATCY 3 cut(s) 462, 697, 860
PvuII CAGCTG 1 cut(s) 451
RsaI GTAC 2 cut(s) 485, 905
RsaNI GTAC 2 cut(s) 484, 904
SacI GAGCTC 5 cut(s) 174, 276, 345, 366, 522
SatI GCNGC 7 cut(s) 87, 411, 444, 452, 556, 684, 726
Sau3AI GATC 8 cut(s) 248, 266, 426, 430, 462, 487, 697, 860
ScrFI CCNGG 2 cut(s) 709, 795
SduI GDGCHC 7 cut(s) 104, 174, 276, 345, 366, 522, 716
SfaNI GCATC 1 cut(s) 507
SfoI GGCGCC 1 cut(s) 729
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 921, 927
SspDI GGCGCC 1 cut(s) 727
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 5 cut(s) 174, 276, 345, 366, 522
StyD4I CCNGG 2 cut(s) 707, 793
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 12, 244
TaqI TCGA 2 cut(s) 429, 852
TasI AATT 2 cut(s) 921, 927
TauI GCSGC 6 cut(s) 89, 413, 446, 558, 686, 728
TfiI GAWTC 2 cut(s) 598, 890
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 775
TseI GCWGC 1 cut(s) 451
Tsp45I GTSAC 1 cut(s) 775
TspDTI ATGAA 1 cut(s) 581
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 1 cut(s) 88
XapI RAATTY 1 cut(s) 921
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.