Rh1DG189500

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0019509
Physical Location & Seq
Reverse (-)
37919468 .. 37925680
6213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG189500.1

Sequence Viewer

Length: 675 bp
ATGGGGTTGATGATGATATACACCATCGATCGGCTCTTTAACTTGTCTTTTTTGGAGGCTGATGAAGCTTTGACTCCGGCTCCGATTGCTGGAGTTTCGGGTCAGCCACACCGGCCTTTCGGGTCGGTTGCAGATCTGCTTAGCGCCGCCCTCTCCTCGGGCTCCCCCGCCTCCACCGCCGAGAAGCTTCAGAACGCCATCCGCCTCCTCGAGTCTCAGCTCCGCTCCGAGGTCCTCTCCCGCCACTCCGACCTCCTCTCCCAGCTCTCCTCCCTCCAGCACGCCGACCACGCCCTCTCCACCGTCCGATCCTCCGTCCACACCCGATCTGAGATCTCCGACCCCCTCTGCTCTATCACCGCCCTCACTCTCCAGCTCTCCAACCTCCACGCCACCTCCGAGCTCCTCCACCACACCCTCCGCGCCCTCCGCCTCTCCAAGAAGCTCCGCGACCTCGCCGCCGACCCCGAGAAGATCGATCTCGCCAAGGCCGCCCAGCTGCATTGCGAGATCTTGGCGCTCTACGACGAGTACGATCTCTCCGGCATCGAAGTCGTCGAGGAGGAGCTCGGCTGGGTCAGAGAGACCGGCGACAAGTTGCGCGGCGAGGCCATGAAGGCGTTGGAGCTAGGGATGGAGGGGTTGAATCAGGGGGAGGTGGCCATCAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG5

Protein Analysis

224

Amino Acids

24.33

Weight (kDa)

5.07

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG5_N PF10392 53 - 149 7e-14 Conserved oligomeric Golgi complex subunit 5, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 225
AccII CGCG 3 cut(s) 423, 450, 603
AclWI GGATC 1 cut(s) 303
AcoI YGGCCR 1 cut(s) 660
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 4 cut(s) 30, 89, 157, 229
AgsI TTSAA 1 cut(s) 646
Alw21I GWGCWC 2 cut(s) 405, 570
Alw26I GTCTC 2 cut(s) 219, 578
AlwI GGATC 1 cut(s) 303
Ama87I CYCGRG 3 cut(s) 157, 209, 467
AoxI GGCC 4 cut(s) 113, 489, 609, 660
ApeKI GCWGC 1 cut(s) 499
AspLEI GCGC 4 cut(s) 146, 425, 520, 603
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 349
AvaI CYCGRG 3 cut(s) 157, 209, 467
AvaII GGWCC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 662
BanII GRGCYC 3 cut(s) 164, 405, 570
Bbv12I GWGCWC 2 cut(s) 405, 570
BbvI GCAGC 1 cut(s) 486
BccI CCATC 4 cut(s) 32, 206, 628, 671
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BcoDI GTCTC 2 cut(s) 219, 578
BfaI CTAG 1 cut(s) 629
BfoI RGCGCY 2 cut(s) 147, 521
BglI GCCNNNNNGGC 2 cut(s) 112, 617
BglII AGATCT 3 cut(s) 133, 333, 510
BisI GCNGC 5 cut(s) 147, 459, 492, 500, 604
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 5 cut(s) 148, 460, 493, 501, 605
Bme18I GGWCC 1 cut(s) 232
BmeT110I CYCGRG 3 cut(s) 157, 209, 467
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 81, 163
BmsI GCATC 1 cut(s) 555
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 3 cut(s) 111, 260, 356
Bpu1102I GCTNAGC 1 cut(s) 140
Bsa29I ATCGAT 2 cut(s) 27, 477
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 3 cut(s) 156, 228, 486
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 89, 157, 229
Bse118I RCCGGY 2 cut(s) 111, 587
Bse3DI GCAATG 1 cut(s) 502
BseCI ATCGAT 2 cut(s) 27, 477
BseDI CCNNGG 3 cut(s) 156, 228, 486
BseGI GGATG 2 cut(s) 198, 639
BseLI CCNNNNNNNGG 4 cut(s) 30, 89, 157, 229
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 230, 321
BseRI GAGGAG 7 cut(s) 145, 197, 245, 259, 395, 575, 578
BseXI GCAGC 1 cut(s) 486
BseYI CCCAGC 3 cut(s) 261, 495, 573
Bsh1236I CGCG 3 cut(s) 423, 450, 603
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 4 cut(s) 115, 491, 611, 662
BshVI ATCGAT 2 cut(s) 27, 477
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 405, 570
BsiHKCI CYCGRG 3 cut(s) 157, 209, 467
BsiSI CCGG 4 cut(s) 77, 112, 543, 588
BslI CCNNNNNNNGG 4 cut(s) 30, 89, 157, 229
BsmAI GTCTC 2 cut(s) 219, 578
BsnI GGCC 4 cut(s) 115, 491, 611, 662
Bso31I GGTCTC 1 cut(s) 578
BsoBI CYCGRG 3 cut(s) 157, 209, 467
Bsp1286I GDGCHC 3 cut(s) 164, 405, 570
Bsp143I GATC 9 cut(s) 28, 133, 308, 326, 333, 474, 478, 510, 535
Bsp1720I GCTNAGC 1 cut(s) 140
BspANI GGCC 4 cut(s) 115, 491, 611, 662
BspCNI CTCAG 2 cut(s) 229, 322
BspDI ATCGAT 2 cut(s) 27, 477
BspFNI CGCG 3 cut(s) 423, 450, 603
BspLI GGNNCC 2 cut(s) 81, 163
BspPI GGATC 1 cut(s) 303
BspTNI GGTCTC 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 502
BsrFI RCCGGY 2 cut(s) 111, 587
BssAI RCCGGY 2 cut(s) 111, 587
BssECI CCNNGG 3 cut(s) 156, 228, 486
BssMI GATC 9 cut(s) 28, 133, 308, 326, 333, 474, 478, 510, 535
BssT1I CCWWGG 1 cut(s) 486
Bst4CI ACNGT 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 3 cut(s) 140, 216, 330
BstF5I GGATG 2 cut(s) 198, 639
BstFNI CGCG 3 cut(s) 423, 450, 603
BstH2I RGCGCY 2 cut(s) 147, 521
BstHHI GCGC 4 cut(s) 146, 425, 520, 603
BstKTI GATC 9 cut(s) 31, 136, 311, 329, 336, 477, 481, 513, 538
BstMAI GTCTC 2 cut(s) 219, 578
BstMBI GATC 9 cut(s) 28, 133, 308, 326, 333, 474, 478, 510, 535
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 8 cut(s) 65, 86, 112, 176, 290, 429, 491, 617
BstUI CGCG 3 cut(s) 423, 450, 603
BstV1I GCAGC 1 cut(s) 486
BstX2I RGATCY 3 cut(s) 133, 333, 510
BstYI RGATCY 3 cut(s) 133, 333, 510
Bsu15I ATCGAT 2 cut(s) 27, 477
BsuRI GGCC 4 cut(s) 115, 491, 611, 662
BsuTUI ATCGAT 2 cut(s) 27, 477
BtsCI GGATG 2 cut(s) 198, 639
BtsIMutI CAGTG 1 cut(s) 673
Cac8I GCNNGC 1 cut(s) 282
CfoI GCGC 4 cut(s) 146, 425, 520, 603
Cfr10I RCCGGY 2 cut(s) 111, 587
Cfr13I GGNCC 1 cut(s) 232
ClaI ATCGAT 2 cut(s) 27, 477
Csp6I GTAC 1 cut(s) 532
CviAII CATG 1 cut(s) 613
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 3 cut(s) 140, 216, 330
DpnI GATC 9 cut(s) 30, 135, 310, 328, 335, 476, 480, 512, 537
DpnII GATC 9 cut(s) 28, 133, 308, 326, 333, 474, 478, 510, 535
EaeI YGGCCR 1 cut(s) 660
EciI GGCGGA 2 cut(s) 191, 419
Ecl136II GAGCTC 2 cut(s) 403, 568
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 3 cut(s) 164, 405, 570
Eco31I GGTCTC 1 cut(s) 578
Eco47I GGWCC 1 cut(s) 232
Eco53kI GAGCTC 2 cut(s) 403, 568
Eco57I CTGAAG 1 cut(s) 173
Eco88I CYCGRG 3 cut(s) 157, 209, 467
EcoICRI GAGCTC 2 cut(s) 403, 568
EcoO109I RGGNCCY 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 3 cut(s) 164, 405, 570
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 1 cut(s) 616
FaiI YATR 2 cut(s) 19, 614
FatI CATG 1 cut(s) 612
FauI CCCGC 2 cut(s) 175, 248
Fnu4HI GCNGC 5 cut(s) 147, 459, 492, 500, 604
FokI GGATG 2 cut(s) 185, 646
FriOI GRGCYC 3 cut(s) 164, 405, 570
Fsp4HI GCNGC 5 cut(s) 147, 459, 492, 500, 604
FspBI CTAG 1 cut(s) 629
GlaI GCGC 4 cut(s) 145, 424, 519, 602
GluI GCNGC 5 cut(s) 147, 459, 492, 500, 604
GsaI CCCAGC 3 cut(s) 265, 499, 577
GsuI CTGGAG 3 cut(s) 111, 260, 356
HaeII RGCGCY 2 cut(s) 147, 521
HaeIII GGCC 4 cut(s) 115, 491, 611, 662
HapII CCGG 4 cut(s) 77, 112, 543, 588
HhaI GCGC 4 cut(s) 146, 425, 520, 603
Hin1II CATG 1 cut(s) 616
Hin6I GCGC 4 cut(s) 144, 423, 518, 601
HinP1I GCGC 4 cut(s) 144, 423, 518, 601
HindIII AAGCTT 2 cut(s) 66, 185
HinfI GANTC 3 cut(s) 73, 212, 646
HpaII CCGG 4 cut(s) 77, 112, 543, 588
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 9 cut(s) 84, 192, 229, 250, 308, 331, 340, 400, 581
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 2 cut(s) 530, 560
HpyAV CCTTC 1 cut(s) 610
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 131, 502
HpyF10VI GCNNNNNNNGC 8 cut(s) 65, 86, 112, 176, 290, 429, 491, 617
HpyF3I CTNAG 3 cut(s) 140, 216, 330
Hsp92II CATG 1 cut(s) 616
HspAI GCGC 4 cut(s) 144, 423, 518, 601
Kzo9I GATC 9 cut(s) 28, 133, 308, 326, 333, 474, 478, 510, 535
LmnI GCTCC 8 cut(s) 85, 167, 225, 230, 408, 450, 565, 625
Lsp1109I GCAGC 1 cut(s) 486
LweI GCATC 1 cut(s) 555
MaeI CTAG 1 cut(s) 629
MalI GATC 9 cut(s) 30, 135, 310, 328, 335, 476, 480, 512, 537
MbiI CCGCTC 1 cut(s) 225
MboI GATC 9 cut(s) 28, 133, 308, 326, 333, 474, 478, 510, 535
MboII GAAGA 1 cut(s) 484
MflI RGATCY 3 cut(s) 133, 333, 510
MhlI GDGCHC 3 cut(s) 164, 405, 570
MlsI TGGCCA 1 cut(s) 662
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 2 cut(s) 67, 221
MmeI TCCRAC 4 cut(s) 273, 363, 405, 603
Mox20I TGGCCA 1 cut(s) 662
MscI TGGCCA 1 cut(s) 662
MseI TTAA 1 cut(s) 39
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 4 cut(s) 77, 112, 543, 588
MvnI CGCG 3 cut(s) 423, 450, 603
MwoI GCNNNNNNNGC 8 cut(s) 65, 86, 112, 176, 290, 429, 491, 617
NdeII GATC 9 cut(s) 28, 133, 308, 326, 333, 474, 478, 510, 535
NlaIII CATG 1 cut(s) 616
NlaIV GGNNCC 2 cut(s) 81, 163
NmeAIII GCCGAG 2 cut(s) 205, 549
PaeR7I CTCGAG 1 cut(s) 209
PcsI WCGNNNNNNNCGW 3 cut(s) 396, 531, 555
PfeI GAWTC 1 cut(s) 646
PkrI GCNGC 5 cut(s) 148, 460, 493, 501, 605
Ple19I CGATCG 1 cut(s) 31
PleI GAGTC 2 cut(s) 67, 220
PpsI GAGTC 2 cut(s) 67, 220
PpuMI RGGWCCY 1 cut(s) 232
Psp124BI GAGCTC 2 cut(s) 405, 570
Psp5II RGGWCCY 1 cut(s) 232
PspFI CCCAGC 3 cut(s) 261, 495, 573
PspN4I GGNNCC 2 cut(s) 81, 163
PspPI GGNCC 1 cut(s) 232
PspPPI RGGWCCY 1 cut(s) 232
PspXI VCTCGAGB 1 cut(s) 209
PsuI RGATCY 3 cut(s) 133, 333, 510
PvuI CGATCG 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
SacI GAGCTC 2 cut(s) 405, 570
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 5 cut(s) 147, 459, 492, 500, 604
Sau3AI GATC 9 cut(s) 28, 133, 308, 326, 333, 474, 478, 510, 535
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 2 cut(s) 67, 221
SduI GDGCHC 3 cut(s) 164, 405, 570
SfaNI GCATC 1 cut(s) 555
Sfr274I CTCGAG 1 cut(s) 209
SinI GGWCC 1 cut(s) 232
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SspMI CTAG 1 cut(s) 629
SstI GAGCTC 2 cut(s) 405, 570
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 5 cut(s) 27, 210, 477, 549, 558
TauI GCSGC 4 cut(s) 149, 461, 494, 606
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 673
TseI GCWGC 1 cut(s) 499
TspDTI ATGAA 2 cut(s) 78, 629
TspGWI ACGGA 1 cut(s) 304
TspRI CASTG 1 cut(s) 673
VpaK11BI GGWCC 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 619
XhoI CTCGAG 1 cut(s) 209
XspI CTAG 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.