Rh1BG158600

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0019509
Physical Location & Seq
Reverse (-)
25755362 .. 25766744
11383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG158600.1

Sequence Viewer

Length: 876 bp
ATGGGCGACGGCAACCAAGGCCTCTTGGCTAATTCTAATTCAAATTCAAACCACGGTAGCAACAAGCAACACCTTCTACAGCAACAAGGAGATTTTCCTTCGCTAACTCATCAGCAATTCCTCCGATGCTCTGAAAAGGAAATATTGCATAGACAACATGATGTCATAGGTGACGTCCCTGTGCTCAATGATGTTCCAGTGGCCGATCAGGATCAGTACCAGAGCTTCTTTCTGGTTGTTGATGGACTCAATCTCTTGCTGACGTCACAGCAGCAAATGGTGAGGCAAGAACAAGACCCAATTGATCAAGAAGATGGTGGCGCTGATTTCACTGATGGGTCTAACGCCGCCCTCTCCTCGGGCTCCCCCGCCTCCACCGCCGAGAAGCTTCAGAACGCCATCCGCCTCCTCGAGTCTCAGCTCCGCTCCGAGGTCCTCTCCCGCCACTCCGACCTCCTCTCCCAGCTCTCCTCCCTCCAGCACGCCGACCACGCCCTCTCCACCGTCCGATCCTCCGTCCACACCCGATCTGAGATCTCCGACCCCCTCTGCTCTATCACCGCCCTCACTCTCCAGCTCTCCAACCTCCACGCCACCTCCGAGCTCCTCCACCACACCCTCCGCGCCCTCCGCCTCTCCAAGAAGCTCCGCGACCTCGCCGCCGACCCCGAGAAGATCGATCTCGCCAAGGCCGCCCAGCTGCATTGCGAGATCTTGGCGCTCTACGACGAGTACGATCTCTCCGGCATCGAAGTCGTCGAGGAGGAGCTCGGCTGGGTCAGAGAGACCGGCGACAAGTTGCGCGGCGAGGCCATGAAGGCGTTGGAGCTAGGGATGGAGGGGTTGAATCAGGGGGAGGTGGCCATCAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG5

Protein Analysis

291

Amino Acids

31.94

Weight (kDa)

4.83

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG5_N PF10392 118 - 216 7.8e-14 Conserved oligomeric Golgi complex subunit 5, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 177, 266
AccBSI CCGCTC 1 cut(s) 426
AccII CGCG 3 cut(s) 624, 651, 804
AclWI GGATC 2 cut(s) 219, 504
AcoI YGGCCR 2 cut(s) 201, 861
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 374
AcyI GRCGYC 2 cut(s) 174, 263
AfaI GTAC 2 cut(s) 218, 734
AfiI CCNNNNNNNGG 2 cut(s) 358, 430
AgsI TTSAA 3 cut(s) 42, 48, 847
Alw21I GWGCWC 3 cut(s) 186, 606, 771
Alw26I GTCTC 2 cut(s) 420, 779
AlwI GGATC 2 cut(s) 219, 504
Ama87I CYCGRG 3 cut(s) 358, 410, 668
AoxI GGCC 5 cut(s) 19, 201, 690, 810, 861
ApeKI GCWGC 2 cut(s) 271, 700
ApoI RAATTY 1 cut(s) 43
AspLEI GCGC 4 cut(s) 323, 626, 721, 804
AspS9I GGNCC 1 cut(s) 433
AsuHPI GGTGA 3 cut(s) 182, 292, 550
AvaI CYCGRG 3 cut(s) 358, 410, 668
AvaII GGWCC 1 cut(s) 433
BalI TGGCCA 1 cut(s) 863
BanII GRGCYC 3 cut(s) 365, 606, 771
BarI GAAGNNNNNNTAC 2 cut(s) 209, 241
Bbv12I GWGCWC 3 cut(s) 186, 606, 771
BbvI GCAGC 2 cut(s) 283, 687
BccI CCATC 6 cut(s) 236, 308, 329, 407, 829, 872
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 736, 770
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 420, 779
BfaI CTAG 1 cut(s) 830
BfmI CTRYAG 1 cut(s) 77
BfoI RGCGCY 2 cut(s) 324, 722
BglI GCCNNNNNGGC 1 cut(s) 818
BglII AGATCT 2 cut(s) 534, 711
BisI GCNGC 6 cut(s) 272, 348, 660, 693, 701, 805
BlsI GCNGC 6 cut(s) 273, 349, 661, 694, 702, 806
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 3 cut(s) 358, 410, 668
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 1 cut(s) 364
BmsI GCATC 2 cut(s) 116, 756
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpmI CTGGAG 2 cut(s) 461, 557
Bsa29I ATCGAT 1 cut(s) 678
BsaBI GATNNNNATC 1 cut(s) 210
BsaHI GRCGYC 2 cut(s) 174, 263
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 5 cut(s) 16, 52, 357, 429, 687
BsaXI ACNNNNNCTCC 8 cut(s) 443, 473, 482, 512, 581, 611, 725, 755
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 430
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 703
Bse8I GATNNNNATC 1 cut(s) 210
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 5 cut(s) 16, 52, 357, 429, 687
BseGI GGATG 2 cut(s) 399, 840
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 358, 430
BseMI GCAATG 1 cut(s) 703
BseMII CTCAG 2 cut(s) 431, 522
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 7 cut(s) 346, 398, 446, 460, 596, 776, 779
BseXI GCAGC 2 cut(s) 283, 687
BseYI CCCAGC 3 cut(s) 462, 696, 774
Bsh1236I CGCG 3 cut(s) 624, 651, 804
BshFI GGCC 5 cut(s) 21, 203, 692, 812, 863
BshVI ATCGAT 1 cut(s) 678
BsiHKAI GWGCWC 3 cut(s) 186, 606, 771
BsiHKCI CYCGRG 3 cut(s) 358, 410, 668
BsiSI CCGG 2 cut(s) 744, 789
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 358, 430
BsmAI GTCTC 2 cut(s) 420, 779
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 5 cut(s) 21, 203, 692, 812, 863
Bso31I GGTCTC 1 cut(s) 779
BsoBI CYCGRG 3 cut(s) 358, 410, 668
Bsp1286I GDGCHC 4 cut(s) 186, 365, 606, 771
BspANI GGCC 5 cut(s) 21, 203, 692, 812, 863
BspCNI CTCAG 2 cut(s) 430, 523
BspDI ATCGAT 1 cut(s) 678
BspFNI CGCG 3 cut(s) 624, 651, 804
BspLI GGNNCC 1 cut(s) 364
BspPI GGATC 2 cut(s) 219, 504
BspTNI GGTCTC 1 cut(s) 779
BsrBI CCGCTC 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 703
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 5 cut(s) 16, 52, 357, 429, 687
BssNI GRCGYC 2 cut(s) 174, 263
BssT1I CCWWGG 2 cut(s) 16, 687
Bst4CI ACNGT 2 cut(s) 56, 505
BstACI GRCGYC 2 cut(s) 174, 263
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 2 cut(s) 417, 531
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 2 cut(s) 399, 840
BstFNI CGCG 3 cut(s) 624, 651, 804
BstH2I RGCGCY 2 cut(s) 324, 722
BstHHI GCGC 4 cut(s) 323, 626, 721, 804
BstMAI GTCTC 2 cut(s) 420, 779
BstMWI GCNNNNNNNGC 6 cut(s) 18, 377, 491, 630, 692, 818
BstSFI CTRYAG 1 cut(s) 77
BstUI CGCG 3 cut(s) 624, 651, 804
BstV1I GCAGC 2 cut(s) 283, 687
BstX2I RGATCY 2 cut(s) 534, 711
BstYI RGATCY 2 cut(s) 534, 711
Bsu15I ATCGAT 1 cut(s) 678
BsuRI GGCC 5 cut(s) 21, 203, 692, 812, 863
BsuTUI ATCGAT 1 cut(s) 678
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 2 cut(s) 399, 840
BtsIMutI CAGTG 3 cut(s) 204, 330, 874
Cac8I GCNNGC 1 cut(s) 483
CfoI GCGC 4 cut(s) 323, 626, 721, 804
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 1 cut(s) 433
ClaI ATCGAT 1 cut(s) 678
Csp6I GTAC 2 cut(s) 217, 733
CviAII CATG 2 cut(s) 158, 814
CviQI GTAC 2 cut(s) 217, 733
DdeI CTNAG 2 cut(s) 417, 531
EaeI YGGCCR 2 cut(s) 201, 861
EciI GGCGGA 2 cut(s) 392, 620
Ecl136II GAGCTC 2 cut(s) 604, 769
Eco130I CCWWGG 2 cut(s) 16, 687
Eco147I AGGCCT 1 cut(s) 21
Eco24I GRGCYC 3 cut(s) 365, 606, 771
Eco31I GGTCTC 1 cut(s) 779
Eco47I GGWCC 1 cut(s) 433
Eco53kI GAGCTC 2 cut(s) 604, 769
Eco57I CTGAAG 1 cut(s) 374
Eco88I CYCGRG 3 cut(s) 358, 410, 668
EcoICRI GAGCTC 2 cut(s) 604, 769
EcoO109I RGGNCCY 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 16, 687
EcoT38I GRGCYC 3 cut(s) 365, 606, 771
ErhI CCWWGG 2 cut(s) 16, 687
FaeI CATG 2 cut(s) 161, 817
FaiI YATR 4 cut(s) 150, 159, 167, 815
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 157, 813
FauI CCCGC 2 cut(s) 376, 449
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 6 cut(s) 272, 348, 660, 693, 701, 805
FokI GGATG 2 cut(s) 386, 847
FriOI GRGCYC 3 cut(s) 365, 606, 771
Fsp4HI GCNGC 6 cut(s) 272, 348, 660, 693, 701, 805
FspBI CTAG 1 cut(s) 830
GlaI GCGC 4 cut(s) 322, 625, 720, 803
GluI GCNGC 6 cut(s) 272, 348, 660, 693, 701, 805
GsaI CCCAGC 3 cut(s) 466, 700, 778
GsuI CTGGAG 2 cut(s) 461, 557
HaeII RGCGCY 2 cut(s) 324, 722
HaeIII GGCC 5 cut(s) 21, 203, 692, 812, 863
HapII CCGG 2 cut(s) 744, 789
HhaI GCGC 4 cut(s) 323, 626, 721, 804
Hin1I GRCGYC 2 cut(s) 174, 263
Hin1II CATG 2 cut(s) 161, 817
Hin6I GCGC 4 cut(s) 321, 624, 719, 802
HinP1I GCGC 4 cut(s) 321, 624, 719, 802
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 3 cut(s) 246, 413, 847
HpaII CCGG 2 cut(s) 744, 789
HphI GGTGA 3 cut(s) 182, 292, 550
Hpy166II GTNNAC 1 cut(s) 520
Hpy188III TCNNGA 2 cut(s) 209, 308
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 3 cut(s) 11, 731, 761
HpyAV CCTTC 3 cut(s) 83, 108, 811
HpyCH4III ACNGT 2 cut(s) 56, 505
HpyCH4IV ACGT 2 cut(s) 174, 263
HpyCH4V TGCA 2 cut(s) 148, 703
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 377, 491, 630, 692, 818
HpyF3I CTNAG 2 cut(s) 417, 531
HpySE526I ACGT 2 cut(s) 174, 263
Hsp92I GRCGYC 2 cut(s) 174, 263
Hsp92II CATG 2 cut(s) 161, 817
HspAI GCGC 4 cut(s) 321, 624, 719, 802
Ksp22I TGATCA 1 cut(s) 304
LmnI GCTCC 7 cut(s) 368, 426, 431, 609, 651, 766, 826
Lsp1109I GCAGC 2 cut(s) 283, 687
LweI GCATC 2 cut(s) 116, 756
MaeI CTAG 1 cut(s) 830
MaeII ACGT 2 cut(s) 174, 263
MaeIII GTNAC 2 cut(s) 170, 264
MbiI CCGCTC 1 cut(s) 426
MboII GAAGA 2 cut(s) 323, 685
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 2 cut(s) 534, 711
MhlI GDGCHC 4 cut(s) 186, 365, 606, 771
MlsI TGGCCA 1 cut(s) 863
MluCI AATT 5 cut(s) 31, 37, 43, 116, 300
MluNI TGGCCA 1 cut(s) 863
MlyI GAGTC 2 cut(s) 240, 422
MmeI TCCRAC 4 cut(s) 474, 564, 606, 804
Mox20I TGGCCA 1 cut(s) 863
MscI TGGCCA 1 cut(s) 863
Msp20I TGGCCA 1 cut(s) 863
MspA1I CMGCKG 1 cut(s) 700
MspI CCGG 2 cut(s) 744, 789
MunI CAATTG 1 cut(s) 300
MvnI CGCG 3 cut(s) 624, 651, 804
MwoI GCNNNNNNNGC 6 cut(s) 18, 377, 491, 630, 692, 818
NlaIII CATG 2 cut(s) 161, 817
NlaIV GGNNCC 1 cut(s) 364
NmeAIII GCCGAG 2 cut(s) 406, 750
NmuCI GTSAC 2 cut(s) 170, 264
PaeR7I CTCGAG 1 cut(s) 410
PceI AGGCCT 1 cut(s) 21
PcsI WCGNNNNNNNCGW 3 cut(s) 597, 732, 756
PfeI GAWTC 1 cut(s) 847
PkrI GCNGC 6 cut(s) 273, 349, 661, 694, 702, 806
PleI GAGTC 2 cut(s) 240, 421
PpsI GAGTC 2 cut(s) 240, 421
PpuMI RGGWCCY 1 cut(s) 433
Psp124BI GAGCTC 2 cut(s) 606, 771
Psp5II RGGWCCY 1 cut(s) 433
PspFI CCCAGC 3 cut(s) 462, 696, 774
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 433
PspPPI RGGWCCY 1 cut(s) 433
PspXI VCTCGAGB 1 cut(s) 410
PsuI RGATCY 2 cut(s) 534, 711
PvuII CAGCTG 1 cut(s) 700
RsaI GTAC 2 cut(s) 218, 734
RsaNI GTAC 2 cut(s) 217, 733
SacI GAGCTC 2 cut(s) 606, 771
SatI GCNGC 6 cut(s) 272, 348, 660, 693, 701, 805
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 2 cut(s) 240, 422
SduI GDGCHC 4 cut(s) 186, 365, 606, 771
SfaNI GCATC 2 cut(s) 116, 756
SfcI CTRYAG 1 cut(s) 77
Sfr274I CTCGAG 1 cut(s) 410
SinI GGWCC 1 cut(s) 433
SlaI CTCGAG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 5 cut(s) 31, 37, 43, 116, 300
SseBI AGGCCT 1 cut(s) 21
SspI AATATT 1 cut(s) 144
SspMI CTAG 1 cut(s) 830
SstI GAGCTC 2 cut(s) 606, 771
StuI AGGCCT 1 cut(s) 21
StyI CCWWGG 2 cut(s) 16, 687
TaaI ACNGT 2 cut(s) 56, 505
TaiI ACGT 2 cut(s) 177, 266
TaqI TCGA 4 cut(s) 411, 678, 750, 759
TasI AATT 5 cut(s) 31, 37, 43, 116, 300
TauI GCSGC 4 cut(s) 350, 662, 695, 807
TfiI GAWTC 1 cut(s) 847
TscAI CASTG 3 cut(s) 204, 337, 874
TseFI GTSAC 2 cut(s) 170, 264
TseI GCWGC 2 cut(s) 271, 700
Tsp45I GTSAC 2 cut(s) 170, 264
TspDTI ATGAA 1 cut(s) 830
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 3 cut(s) 204, 337, 874
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 1 cut(s) 43
XcmI CCANNNNNNNNNTGG 1 cut(s) 820
XhoI CTCGAG 1 cut(s) 410
XspI CTAG 1 cut(s) 830
ZraI GACGTC 2 cut(s) 175, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.