Rmu_sc0000625.1_g000012

Protein of unknown function (DUF819)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000625.1
OG0009936
Physical Location & Seq
Reverse (-)
51107 .. 52996
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000625.1_g000012.1.cds

Sequence Viewer

Length: 1104 bp
atggggcaactggaccgtactcttcgccaccggcactttcggtcggagaagaacaccaacattgggggtgcattgagtggcgcgttggtaagcacattgattggacttgcggcgagcaatttgggagttatttcgtcgaatgcaccagcattatcgattgtgttggagtttctgctccctctggctgtgccattgctgttgtacagggcggacttgcgccgtgtgatcaaatcaaccgggcctctgctcttggccttcttgctaggatcagttgcgacgacagttggaacagtggtggcatatctattggtgccgatgcgagcacttgggccagatagttggaaaatagcagctgcactcatgggaagacacatcggtggatctttcaattacgttgccatagccgatgctcttggggtttctccgtcaattttagctgctggtctagccgcagataatgtcattaatgctgtatacttttcaacattgtttgcattggcttcaagagtacctgcagaggctccaatatctgatactggcattgcaatggacgcagagtccgactctggaaacaaacttcctctggtacaaactgctacagcccttgccgtgtccttagccatctgcaagagtggctattatctcacaaaatactttcgaattcaaggaggtatcctgccagccgtaacagccattgtggttgttcttgcgactgtatttccaaaacagtttgcatatcttgcaccatctggtgaggctatggccatgatcctaatgcaggtatttttcacggtggtgggagcgagtgggagcatttggagtgtgatcaacactgctcctagtatcttcctctttgctttagtccagattgccgtccatcttgctatgattcttggattaggaaagctactgggatttgacctcaagttgttgcttatagcatcaaatgccaatattggaggcccaacaacagcttgtggaatggccacaaccaaagaatggcattctatgattgtccctggtattcttgcaggcatcttcggcatttccattgcaactttcctcggcattggatttggggttgccgttctaaaagccatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF819

Protein Analysis

367

Amino Acids

38.03

Weight (kDa)

9.49

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 520, 769
AccB1I GGYRCC 1 cut(s) 310
AccB7I CCANNNNNTGG 1 cut(s) 999
AccI GTMKAC 1 cut(s) 474
AccII CGCG 1 cut(s) 83
AciI CCGC 3 cut(s) 110, 209, 450
AclWI GGATC 3 cut(s) 274, 388, 763
AcoI YGGCCR 2 cut(s) 762, 984
AcsI RAATTY 1 cut(s) 660
AfaI GTAC 4 cut(s) 19, 203, 510, 588
AfiI CCNNNNNNNGG 3 cut(s) 63, 778, 999
AgsI TTSAA 4 cut(s) 388, 483, 504, 665
AhdI GACNNNNNGTC 1 cut(s) 556
AjnI CCWGG 1 cut(s) 1018
AleI CACNNNNGTG 2 cut(s) 375, 794
AluBI AGCT 4 cut(s) 353, 437, 907, 974
AluI AGCT 4 cut(s) 353, 437, 907, 974
Alw21I GWGCWC 1 cut(s) 325
AlwI GGATC 3 cut(s) 274, 388, 763
AoxI GGCC 6 cut(s) 239, 252, 329, 762, 961, 984
ApeKI GCWGC 3 cut(s) 350, 353, 437
ApoI RAATTY 1 cut(s) 660
AseI ATTAAT 1 cut(s) 465
AspLEI GCGC 2 cut(s) 83, 219
AspS9I GGNCC 4 cut(s) 13, 239, 329, 962
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 764
AsuII TTCGAA 1 cut(s) 658
AvaII GGWCC 1 cut(s) 13
BalI TGGCCA 2 cut(s) 764, 986
BanI GGYRCC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 3 cut(s) 340, 362, 424
BccI CCATC 3 cut(s) 629, 754, 885
BceAI ACGGC 5 cut(s) 204, 593, 668, 857, 1070
BciT130I CCWGG 1 cut(s) 1020
BciVI GTATCC 1 cut(s) 683
BclI TGATCA 2 cut(s) 225, 825
BcnI CCSGG 1 cut(s) 238
BfaI CTAG 3 cut(s) 263, 446, 840
BfmI CTRYAG 2 cut(s) 513, 597
BfuAI ACCTGC 2 cut(s) 520, 769
BfuI GTATCC 1 cut(s) 683
BisI GCNGC 5 cut(s) 111, 351, 354, 438, 450
BlsI GCNGC 5 cut(s) 112, 352, 355, 439, 451
Bme1390I CCNGG 2 cut(s) 238, 1020
Bme18I GGWCC 1 cut(s) 13
BmeRI GACNNNNNGTC 1 cut(s) 556
BmgT120I GGNCC 4 cut(s) 13, 239, 329, 962
BmiI GGNNCC 2 cut(s) 312, 522
BmrFI CCNGG 2 cut(s) 238, 1020
BmrI ACTGGG 1 cut(s) 920
BmsI GCATC 4 cut(s) 306, 397, 950, 1044
BmuI ACTGGG 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 373
BplI GAGNNNNNCTC 2 cut(s) 548, 580
Bpu10I CCTNAGC 1 cut(s) 616
Bpu14I TTCGAA 1 cut(s) 658
BpuEI CTTGAG 1 cut(s) 908
BpuMI CCSGG 1 cut(s) 238
Bsa29I ATCGAT 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 1018, 1063
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 778, 999
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 3 cut(s) 15, 541, 915
Bse3DI GCAATG 4 cut(s) 191, 540, 552, 1050
BseBI CCWGG 1 cut(s) 1020
BseCI ATCGAT 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 1018, 1063
BseLI CCNNNNNNNGG 3 cut(s) 63, 778, 999
BseMI GCAATG 4 cut(s) 191, 540, 552, 1050
BseNI ACTGG 3 cut(s) 15, 541, 915
BseXI GCAGC 3 cut(s) 340, 362, 424
BsgI GTGCAG 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 44
BshFI GGCC 6 cut(s) 241, 254, 331, 764, 963, 986
BshNI GGYRCC 1 cut(s) 310
BshVI ATCGAT 1 cut(s) 155
BsiEI CGRYCG 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 2 cut(s) 31, 237
BslFI GGGAC 1 cut(s) 1001
BslI CCNNNNNNNGG 3 cut(s) 63, 778, 999
BsmFI GGGAC 1 cut(s) 1001
BsmI GAATGC 2 cut(s) 145, 1003
BsnI GGCC 6 cut(s) 241, 254, 331, 764, 963, 986
Bsp119I TTCGAA 1 cut(s) 658
Bsp1286I GDGCHC 1 cut(s) 325
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 5 cut(s) 225, 266, 380, 768, 825
BspACI CCGC 3 cut(s) 110, 209, 450
BspANI GGCC 6 cut(s) 241, 254, 331, 764, 963, 986
BspDI ATCGAT 1 cut(s) 155
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 312, 522
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 2 cut(s) 520, 769
BspPI GGATC 3 cut(s) 274, 388, 763
BspT104I TTCGAA 1 cut(s) 658
BspT107I GGYRCC 1 cut(s) 310
BsrDI GCAATG 4 cut(s) 191, 540, 552, 1050
BsrFI RCCGGY 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 201
BsrI ACTGG 3 cut(s) 15, 541, 915
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 1018, 1063
BssMI GATC 5 cut(s) 225, 266, 380, 768, 825
BssNAI GTATAC 1 cut(s) 475
Bst1107I GTATAC 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 1020
Bst4CI ACNGT 6 cut(s) 17, 283, 292, 715, 729, 793
Bst6I CTCTTC 1 cut(s) 27
BstAPI GCANNNNNTGC 2 cut(s) 740, 947
BstAUI TGTACA 1 cut(s) 201
BstBI TTCGAA 1 cut(s) 658
BstC8I GCNNGC 4 cut(s) 115, 321, 681, 1033
BstDEI CTNAG 1 cut(s) 616
BstENI CCTNNNNNAGG 1 cut(s) 776
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 2 cut(s) 83, 219
BstKTI GATC 5 cut(s) 228, 269, 383, 771, 828
BstMBI GATC 5 cut(s) 225, 266, 380, 768, 825
BstMCI CGRYCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 7 cut(s) 446, 551, 633, 689, 740, 947, 1041
BstNI CCWGG 1 cut(s) 1020
BstSCI CCNGG 2 cut(s) 236, 1018
BstSFI CTRYAG 2 cut(s) 513, 597
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 3 cut(s) 340, 362, 424
BstV2I GAAGAC 1 cut(s) 373
BstX2I RGATCY 1 cut(s) 380
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 1 cut(s) 380
BstZ17I GTATAC 1 cut(s) 475
Bsu15I ATCGAT 1 cut(s) 155
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 6 cut(s) 241, 254, 331, 764, 963, 986
BsuTUI ATCGAT 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 2 cut(s) 297, 831
BveI ACCTGC 2 cut(s) 520, 769
Cac8I GCNNGC 4 cut(s) 115, 321, 681, 1033
CfoI GCGC 2 cut(s) 83, 219
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 4 cut(s) 13, 239, 329, 962
ClaI ATCGAT 1 cut(s) 155
CseI GACGC 1 cut(s) 560
Csp6I GTAC 4 cut(s) 18, 202, 509, 587
CviAII CATG 3 cut(s) 361, 766, 1099
CviQI GTAC 4 cut(s) 18, 202, 509, 587
DdeI CTNAG 1 cut(s) 616
DpnI GATC 5 cut(s) 227, 268, 382, 770, 827
DpnII GATC 5 cut(s) 225, 266, 380, 768, 825
DriI GACNNNNNGTC 1 cut(s) 556
EaeI YGGCCR 2 cut(s) 762, 984
Eam1104I CTCTTC 1 cut(s) 27
Eam1105I GACNNNNNGTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 27
EciI GGCGGA 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 13
EcoNI CCTNNNNNAGG 1 cut(s) 776
EcoRI GAATTC 1 cut(s) 660
EcoRII CCWGG 1 cut(s) 1018
FaeI CATG 3 cut(s) 364, 769, 1102
FaqI GGGAC 1 cut(s) 1001
FatI CATG 3 cut(s) 360, 765, 1098
FbaI TGATCA 2 cut(s) 225, 825
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 5 cut(s) 111, 351, 354, 438, 450
Fsp4HI GCNGC 5 cut(s) 111, 351, 354, 438, 450
FspBI CTAG 3 cut(s) 263, 446, 840
GlaI GCGC 2 cut(s) 82, 218
GluI GCNGC 5 cut(s) 111, 351, 354, 438, 450
HaeIII GGCC 6 cut(s) 241, 254, 331, 764, 963, 986
HapII CCGG 2 cut(s) 31, 237
HgaI GACGC 1 cut(s) 560
HhaI GCGC 2 cut(s) 83, 219
Hin1II CATG 3 cut(s) 364, 769, 1102
Hin6I GCGC 2 cut(s) 81, 217
HinP1I GCGC 2 cut(s) 81, 217
HinfI GANTC 3 cut(s) 557, 563, 889
HpaII CCGG 2 cut(s) 31, 237
HphI GGTGA 1 cut(s) 764
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 46, 532, 562
Hpy188III TCNNGA 3 cut(s) 504, 567, 865
Hpy8I GTNNAC 1 cut(s) 475
Hpy99I CGWCG 2 cut(s) 139, 280
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 6 cut(s) 17, 283, 292, 715, 729, 793
HpyCH4IV ACGT 1 cut(s) 393
HpyF10VI GCNNNNNNNGC 7 cut(s) 446, 551, 633, 689, 740, 947, 1041
HpyF3I CTNAG 1 cut(s) 616
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 3 cut(s) 364, 769, 1102
HspAI GCGC 2 cut(s) 81, 217
Ksp22I TGATCA 2 cut(s) 225, 825
Kzo9I GATC 5 cut(s) 225, 266, 380, 768, 825
LmnI GCTCC 5 cut(s) 180, 526, 800, 810, 841
Lsp1109I GCAGC 3 cut(s) 340, 362, 424
LweI GCATC 4 cut(s) 306, 397, 950, 1044
MaeI CTAG 3 cut(s) 263, 446, 840
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 685
MalI GATC 5 cut(s) 227, 268, 382, 770, 827
MboI GATC 5 cut(s) 225, 266, 380, 768, 825
MboII GAAGA 5 cut(s) 14, 61, 378, 838, 1030
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 325
MlsI TGGCCA 2 cut(s) 764, 986
MluCI AATT 4 cut(s) 118, 388, 429, 660
MluNI TGGCCA 2 cut(s) 764, 986
MlyI GAGTC 2 cut(s) 557, 566
MmeI TCCRAC 5 cut(s) 24, 144, 265, 320, 585
Mox20I TGGCCA 2 cut(s) 764, 986
MscI TGGCCA 2 cut(s) 764, 986
MseI TTAA 1 cut(s) 465
MslI CAYNNNNRTG 3 cut(s) 375, 545, 794
Msp20I TGGCCA 2 cut(s) 764, 986
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 2 cut(s) 31, 237
MspR9I CCNGG 2 cut(s) 238, 1020
Mva1269I GAATGC 2 cut(s) 145, 1003
MvaI CCWGG 1 cut(s) 1020
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 7 cut(s) 446, 551, 633, 689, 740, 947, 1041
NciI CCSGG 1 cut(s) 238
NdeII GATC 5 cut(s) 225, 266, 380, 768, 825
NlaIII CATG 3 cut(s) 364, 769, 1102
NlaIV GGNNCC 2 cut(s) 312, 522
NmeAIII GCCGAG 1 cut(s) 1044
NspV TTCGAA 1 cut(s) 658
OliI CACNNNNGTG 2 cut(s) 375, 794
PcsI WCGNNNNNNNCGW 1 cut(s) 558
PctI GAATGC 2 cut(s) 145, 1003
PfeI GAWTC 1 cut(s) 889
PflMI CCANNNNNTGG 1 cut(s) 999
PkrI GCNGC 5 cut(s) 112, 352, 355, 439, 451
PleI GAGTC 2 cut(s) 557, 565
PpsI GAGTC 2 cut(s) 557, 565
PshBI ATTAAT 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 1018
PspGI CCWGG 1 cut(s) 1018
PspN4I GGNNCC 2 cut(s) 312, 522
PspPI GGNCC 4 cut(s) 13, 239, 329, 962
PstI CTGCAG 1 cut(s) 517
PsuI RGATCY 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 4 cut(s) 19, 203, 510, 588
RsaNI GTAC 4 cut(s) 18, 202, 509, 587
RseI CAYNNNNRTG 3 cut(s) 375, 545, 794
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 5 cut(s) 111, 351, 354, 438, 450
Sau3AI GATC 5 cut(s) 225, 266, 380, 768, 825
Sau96I GGNCC 4 cut(s) 13, 239, 329, 962
SchI GAGTC 2 cut(s) 557, 566
ScrFI CCNGG 2 cut(s) 238, 1020
SduI GDGCHC 1 cut(s) 325
SetI ASST 9 cut(s) 355, 396, 439, 514, 673, 783, 909, 924, 976
SfaNI GCATC 4 cut(s) 306, 397, 950, 1044
SfcI CTRYAG 2 cut(s) 513, 597
SfuI TTCGAA 1 cut(s) 658
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 3 cut(s) 375, 545, 794
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
Sse9I AATT 4 cut(s) 118, 388, 429, 660
SsiI CCGC 3 cut(s) 110, 209, 450
SspI AATATT 1 cut(s) 955
SspMI CTAG 3 cut(s) 263, 446, 840
StyD4I CCNGG 2 cut(s) 236, 1018
TaaI ACNGT 6 cut(s) 17, 283, 292, 715, 729, 793
TaiI ACGT 1 cut(s) 396
TaqI TCGA 3 cut(s) 137, 155, 658
TaqII GACCGA 1 cut(s) 30
TasI AATT 4 cut(s) 118, 388, 429, 660
TatI WGTACW 1 cut(s) 201
TauI GCSGC 2 cut(s) 113, 452
TfiI GAWTC 1 cut(s) 889
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 2 cut(s) 297, 838
TseI GCWGC 3 cut(s) 350, 353, 437
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 2 cut(s) 297, 838
Van91I CCANNNNNTGG 1 cut(s) 999
VpaK11BI GGWCC 1 cut(s) 13
VspI ATTAAT 1 cut(s) 465
XagI CCTNNNNNAGG 1 cut(s) 776
XapI RAATTY 1 cut(s) 660
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 3 cut(s) 263, 446, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.