Rh1BG386000

Protein of unknown function (DUF819)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009936
Physical Location & Seq
Reverse (-)
51371045 .. 51372768
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG386000.1

Sequence Viewer

Length: 1071 bp
ATGGGGAGGTCGGAGAAGAACACCAACATTGGGGGTGCATTGAGTGGCGCGTTGGTGAGCACATTGATTGGACTTGTGGTGAGCAATTTGGGAGTTATTTCGTCGAATGCACCAGCGTTATCGATTGTGTTGGAGTTTCTGCTCCCTCTGGCTGTGCCATTGCTGTTGTACAGGGCGGACTTGCGCCGTGTGATCAAATCGACCGGGCCTCTGCTCTTGGCCTTCTTGCTAGGATCAGTTGCGACGACAGTTGGAACAGTGGTGGCATATCTATTGGTGCCGATGCGAGCACTTGGGCCAGATAGTTGGAAAATAGCAGCTGCACTCATGGGAAGACACATCGGTGGATCTTTCAATTACGTTGCCATAGCCGATGCTCTTGGGGTTTCTCCGTCAATTTTAGCTGCTGGACTAGCCGCAGATAATGTCATTAATGCTGTATACTTTTCAACATTGTTTGCATTGGCTTCAAGAGTACCTGCAGAGGCTCCAACATTTGATACTGGCATTGCAATGGACGCAGAGTCCGACTCTGGAAACAAACTTCCTCTGGTACAAACTGCTACAGCCCTTGCCGTGTCCTTAGCCATCTGCAAGAGTGGCTATTATCTCACAAAATACTTTCGAATTCAAGGAGGTATCCTGCCAGCTGTAACAGCCATTGTGGTTGTTCTTGCGACTGTATTTCCAAAACAGTTTGCATATCTTGCACCATCTGGTGAGGCTATGGCCATGATCCTAATGCAGGTATTTTTCACGGTGGTGGGAGCGAGTGGGAGCATTTGGAGTGTGATCAACACTGCTCCTAGTATCTTCCTCTTTGCTTTAGTCCAGATTGCCGTCCATCTTGCTATGATTCTTGGATTAGGAAAGCTACTGGGATTTGACCTCAAGTTGTTGCTTATAGCATCAAATGCCAATATTGGAGGCCCAACAACAGCTTGTGGAATGGCCACAACCAAAGAATGGCATTCTATGATTGTCCCTGGTATTCTTGCAGGCATCTTCGGCATTTCCATTGCAACTTTCCTCGGCATTGGATTTGGGGTTGCCGTTCTAAAAGCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF819

Protein Analysis

356

Amino Acids

36.67

Weight (kDa)

9.23

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF819 PF05684 4 - 354 8.4e-115 Protein of unknown function (DUF819)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 487, 736
AccB1I GGYRCC 1 cut(s) 277
AccB7I CCANNNNNTGG 1 cut(s) 966
AccI GTMKAC 1 cut(s) 441
AccII CGCG 1 cut(s) 50
AciI CCGC 2 cut(s) 176, 417
AclWI GGATC 3 cut(s) 241, 355, 730
AcoI YGGCCR 2 cut(s) 729, 951
AcsI RAATTY 1 cut(s) 627
AfaI GTAC 3 cut(s) 170, 477, 555
AfiI CCNNNNNNNGG 3 cut(s) 30, 745, 966
AgsI TTSAA 4 cut(s) 355, 450, 471, 632
AhdI GACNNNNNGTC 1 cut(s) 523
AjnI CCWGG 1 cut(s) 985
AleI CACNNNNGTG 2 cut(s) 342, 761
AluBI AGCT 5 cut(s) 320, 404, 650, 874, 941
AluI AGCT 5 cut(s) 320, 404, 650, 874, 941
Alw21I GWGCWC 2 cut(s) 62, 292
AlwI GGATC 3 cut(s) 241, 355, 730
AoxI GGCC 6 cut(s) 206, 219, 296, 729, 928, 951
ApeKI GCWGC 3 cut(s) 317, 320, 404
ApoI RAATTY 1 cut(s) 627
AseI ATTAAT 1 cut(s) 432
AspLEI GCGC 2 cut(s) 50, 186
AspS9I GGNCC 3 cut(s) 206, 296, 929
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 3 cut(s) 67, 91, 731
AsuII TTCGAA 1 cut(s) 625
BalI TGGCCA 2 cut(s) 731, 953
BanI GGYRCC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 340
Bbv12I GWGCWC 2 cut(s) 62, 292
BbvI GCAGC 3 cut(s) 307, 329, 391
BccI CCATC 3 cut(s) 596, 721, 852
BceAI ACGGC 4 cut(s) 171, 560, 824, 1037
BciT130I CCWGG 1 cut(s) 987
BciVI GTATCC 1 cut(s) 650
BclI TGATCA 2 cut(s) 192, 792
BcnI CCSGG 1 cut(s) 205
BfaI CTAG 3 cut(s) 230, 413, 807
BfmI CTRYAG 2 cut(s) 480, 564
BfuAI ACCTGC 2 cut(s) 487, 736
BfuI GTATCC 1 cut(s) 650
BisI GCNGC 4 cut(s) 318, 321, 405, 417
BlsI GCNGC 4 cut(s) 319, 322, 406, 418
Bme1390I CCNGG 2 cut(s) 205, 987
BmeRI GACNNNNNGTC 1 cut(s) 523
BmgT120I GGNCC 3 cut(s) 206, 296, 929
BmiI GGNNCC 2 cut(s) 279, 489
BmrFI CCNGG 2 cut(s) 205, 987
BmrI ACTGGG 1 cut(s) 887
BmsI GCATC 4 cut(s) 273, 364, 917, 1011
BmuI ACTGGG 1 cut(s) 887
BpiI GAAGAC 1 cut(s) 340
BplI GAGNNNNNCTC 2 cut(s) 515, 547
Bpu10I CCTNAGC 1 cut(s) 583
Bpu14I TTCGAA 1 cut(s) 625
BpuEI CTTGAG 1 cut(s) 875
BpuMI CCSGG 1 cut(s) 205
Bsa29I ATCGAT 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 985, 1030
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 745, 966
Bse1I ACTGG 2 cut(s) 508, 882
Bse3DI GCAATG 4 cut(s) 158, 507, 519, 1017
BseBI CCWGG 1 cut(s) 987
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 985, 1030
BseLI CCNNNNNNNGG 3 cut(s) 30, 745, 966
BseMI GCAATG 4 cut(s) 158, 507, 519, 1017
BseNI ACTGG 2 cut(s) 508, 882
BseXI GCAGC 3 cut(s) 307, 329, 391
BsgI GTGCAG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 6 cut(s) 208, 221, 298, 731, 930, 953
BshNI GGYRCC 1 cut(s) 277
BshVI ATCGAT 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 204
BsiHKAI GWGCWC 2 cut(s) 62, 292
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 968
BslI CCNNNNNNNGG 3 cut(s) 30, 745, 966
BsmFI GGGAC 1 cut(s) 968
BsmI GAATGC 2 cut(s) 112, 970
BsnI GGCC 6 cut(s) 208, 221, 298, 731, 930, 953
Bsp119I TTCGAA 1 cut(s) 625
Bsp1286I GDGCHC 2 cut(s) 62, 292
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 5 cut(s) 192, 233, 347, 735, 792
BspACI CCGC 2 cut(s) 176, 417
BspANI GGCC 6 cut(s) 208, 221, 298, 731, 930, 953
BspDI ATCGAT 1 cut(s) 122
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 279, 489
BspMAI CTGCAG 1 cut(s) 484
BspMI ACCTGC 2 cut(s) 487, 736
BspPI GGATC 3 cut(s) 241, 355, 730
BspT104I TTCGAA 1 cut(s) 625
BspT107I GGYRCC 1 cut(s) 277
BsrDI GCAATG 4 cut(s) 158, 507, 519, 1017
BsrGI TGTACA 1 cut(s) 168
BsrI ACTGG 2 cut(s) 508, 882
BssECI CCNNGG 2 cut(s) 985, 1030
BssMI GATC 5 cut(s) 192, 233, 347, 735, 792
BssNAI GTATAC 1 cut(s) 442
Bst1107I GTATAC 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 987
Bst4CI ACNGT 5 cut(s) 250, 259, 682, 696, 760
BstAPI GCANNNNNTGC 2 cut(s) 707, 914
BstAUI TGTACA 1 cut(s) 168
BstBI TTCGAA 1 cut(s) 625
BstC8I GCNNGC 3 cut(s) 288, 648, 1000
BstDEI CTNAG 1 cut(s) 583
BstENI CCTNNNNNAGG 1 cut(s) 743
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 2 cut(s) 50, 186
BstKTI GATC 5 cut(s) 195, 236, 350, 738, 795
BstMBI GATC 5 cut(s) 192, 233, 347, 735, 792
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 7 cut(s) 413, 518, 600, 656, 707, 914, 1008
BstNI CCWGG 1 cut(s) 987
BstSCI CCNGG 2 cut(s) 203, 985
BstSFI CTRYAG 2 cut(s) 480, 564
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 3 cut(s) 307, 329, 391
BstV2I GAAGAC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 347
BstXI CCANNNNNNTGG 1 cut(s) 306
BstYI RGATCY 1 cut(s) 347
BstZ17I GTATAC 1 cut(s) 442
Bsu15I ATCGAT 1 cut(s) 122
BsuI GTATCC 1 cut(s) 650
BsuRI GGCC 6 cut(s) 208, 221, 298, 731, 930, 953
BsuTUI ATCGAT 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 798
BtsIMutI CAGTG 2 cut(s) 264, 798
BveI ACCTGC 2 cut(s) 487, 736
Cac8I GCNNGC 3 cut(s) 288, 648, 1000
CfoI GCGC 2 cut(s) 50, 186
Cfr13I GGNCC 3 cut(s) 206, 296, 929
ClaI ATCGAT 1 cut(s) 122
CseI GACGC 1 cut(s) 527
Csp6I GTAC 3 cut(s) 169, 476, 554
CviAII CATG 3 cut(s) 328, 733, 1066
CviQI GTAC 3 cut(s) 169, 476, 554
DdeI CTNAG 1 cut(s) 583
DpnI GATC 5 cut(s) 194, 235, 349, 737, 794
DpnII GATC 5 cut(s) 192, 233, 347, 735, 792
DriI GACNNNNNGTC 1 cut(s) 523
EaeI YGGCCR 2 cut(s) 729, 951
Eam1105I GACNNNNNGTC 1 cut(s) 523
EciI GGCGGA 1 cut(s) 191
EcoNI CCTNNNNNAGG 1 cut(s) 743
EcoRI GAATTC 1 cut(s) 627
EcoRII CCWGG 1 cut(s) 985
FaeI CATG 3 cut(s) 331, 736, 1069
FaqI GGGAC 1 cut(s) 968
FatI CATG 3 cut(s) 327, 732, 1065
FbaI TGATCA 2 cut(s) 192, 792
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 4 cut(s) 318, 321, 405, 417
Fsp4HI GCNGC 4 cut(s) 318, 321, 405, 417
FspBI CTAG 3 cut(s) 230, 413, 807
GlaI GCGC 2 cut(s) 49, 185
GluI GCNGC 4 cut(s) 318, 321, 405, 417
HaeIII GGCC 6 cut(s) 208, 221, 298, 731, 930, 953
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 527
HhaI GCGC 2 cut(s) 50, 186
Hin1II CATG 3 cut(s) 331, 736, 1069
Hin6I GCGC 2 cut(s) 48, 184
HinP1I GCGC 2 cut(s) 48, 184
HinfI GANTC 3 cut(s) 524, 530, 856
HpaII CCGG 1 cut(s) 204
HphI GGTGA 3 cut(s) 67, 91, 731
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 2 cut(s) 13, 529
Hpy188III TCNNGA 3 cut(s) 471, 534, 832
Hpy8I GTNNAC 1 cut(s) 442
Hpy99I CGWCG 2 cut(s) 106, 247
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 5 cut(s) 250, 259, 682, 696, 760
HpyCH4IV ACGT 1 cut(s) 360
HpyF10VI GCNNNNNNNGC 7 cut(s) 413, 518, 600, 656, 707, 914, 1008
HpyF3I CTNAG 1 cut(s) 583
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 3 cut(s) 331, 736, 1069
HspAI GCGC 2 cut(s) 48, 184
Ksp22I TGATCA 2 cut(s) 192, 792
Kzo9I GATC 5 cut(s) 192, 233, 347, 735, 792
LmnI GCTCC 5 cut(s) 147, 493, 767, 777, 808
Lsp1109I GCAGC 3 cut(s) 307, 329, 391
LweI GCATC 4 cut(s) 273, 364, 917, 1011
MaeI CTAG 3 cut(s) 230, 413, 807
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 652
MalI GATC 5 cut(s) 194, 235, 349, 737, 794
MboI GATC 5 cut(s) 192, 233, 347, 735, 792
MboII GAAGA 4 cut(s) 28, 345, 805, 997
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 62, 292
MlsI TGGCCA 2 cut(s) 731, 953
MluCI AATT 4 cut(s) 85, 355, 396, 627
MluNI TGGCCA 2 cut(s) 731, 953
MlyI GAGTC 2 cut(s) 524, 533
MmeI TCCRAC 5 cut(s) 111, 232, 287, 515, 552
Mox20I TGGCCA 2 cut(s) 731, 953
MscI TGGCCA 2 cut(s) 731, 953
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 3 cut(s) 342, 512, 761
Msp20I TGGCCA 2 cut(s) 731, 953
MspA1I CMGCKG 2 cut(s) 320, 650
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 2 cut(s) 205, 987
Mva1269I GAATGC 2 cut(s) 112, 970
MvaI CCWGG 1 cut(s) 987
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 7 cut(s) 413, 518, 600, 656, 707, 914, 1008
NciI CCSGG 1 cut(s) 205
NdeII GATC 5 cut(s) 192, 233, 347, 735, 792
NlaIII CATG 3 cut(s) 331, 736, 1069
NlaIV GGNNCC 2 cut(s) 279, 489
NmeAIII GCCGAG 1 cut(s) 1011
NspV TTCGAA 1 cut(s) 625
OliI CACNNNNGTG 2 cut(s) 342, 761
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PctI GAATGC 2 cut(s) 112, 970
PfeI GAWTC 1 cut(s) 856
PflMI CCANNNNNTGG 1 cut(s) 966
PkrI GCNGC 4 cut(s) 319, 322, 406, 418
PleI GAGTC 2 cut(s) 524, 532
PpsI GAGTC 2 cut(s) 524, 532
PshBI ATTAAT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 985
PspGI CCWGG 1 cut(s) 985
PspN4I GGNNCC 2 cut(s) 279, 489
PspPI GGNCC 3 cut(s) 206, 296, 929
PstI CTGCAG 1 cut(s) 484
PsuI RGATCY 1 cut(s) 347
PvuII CAGCTG 2 cut(s) 320, 650
RsaI GTAC 3 cut(s) 170, 477, 555
RsaNI GTAC 3 cut(s) 169, 476, 554
RseI CAYNNNNRTG 3 cut(s) 342, 512, 761
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 4 cut(s) 318, 321, 405, 417
Sau3AI GATC 5 cut(s) 192, 233, 347, 735, 792
Sau96I GGNCC 3 cut(s) 206, 296, 929
SchI GAGTC 2 cut(s) 524, 533
ScrFI CCNGG 2 cut(s) 205, 987
SduI GDGCHC 2 cut(s) 62, 292
SfaNI GCATC 4 cut(s) 273, 364, 917, 1011
SfcI CTRYAG 2 cut(s) 480, 564
SfuI TTCGAA 1 cut(s) 625
SmiMI CAYNNNNRTG 3 cut(s) 342, 512, 761
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
Sse9I AATT 4 cut(s) 85, 355, 396, 627
SsiI CCGC 2 cut(s) 176, 417
SspI AATATT 1 cut(s) 922
SspMI CTAG 3 cut(s) 230, 413, 807
StyD4I CCNGG 2 cut(s) 203, 985
TaaI ACNGT 5 cut(s) 250, 259, 682, 696, 760
TaiI ACGT 1 cut(s) 363
TaqI TCGA 4 cut(s) 104, 122, 200, 625
TasI AATT 4 cut(s) 85, 355, 396, 627
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 1 cut(s) 856
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 2 cut(s) 264, 805
TseI GCWGC 3 cut(s) 317, 320, 404
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 2 cut(s) 264, 805
Van91I CCANNNNNTGG 1 cut(s) 966
VspI ATTAAT 1 cut(s) 432
XagI CCTNNNNNAGG 1 cut(s) 743
XapI RAATTY 1 cut(s) 627
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 3 cut(s) 230, 413, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.