Rw1G037460

Protein of unknown function (DUF819)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0009936
Physical Location & Seq
Reverse (-)
65125832 .. 65128239
2408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037460.1

Sequence Viewer

Length: 1365 bp
ATGGCCATGGCATCGAAGCTCTCCGTTTTACCCGGCTCACGCCTATCGTTGCCGGTAGAGTTACAACGGTCACATTTATGCTCTCGCCAAAGTCTGAGTTTCGGTCTTTCACGCCCCACCGCCGGTGGCAGCTCATTTCCGATAAAGAACACAAGGCAGCAGACCTTTCTCTCTCCTCCGGCTCCGCCTAACTCCGACCGATCTGTTACCGCCAGATTCCAGCTCCAAGCACCTCTCATTTCCCCACATGATCAATGGGGCAACTGGACCGTGCTCTTCGCCACCGGCGCTTTCGGTATCTGGTCGGAGAAGAACACTAACATTGGGGGTGCATTGAGTGGGGCGTTGGTGAGCACATTGATTGGACTTGCGGCGAGCAATTTGGGAGTTATTTCGTCGAATGCACCGGCGTTTTCGATTGTGTTGGAGTTTCTGCTACCTCTGGCTGTGCCATTGCTTTTGTACAGGGCGGATTTGCGCCGTGTGATCAAATCAACCGGGGCGCTGCTCTTGGCCTTCTTGCTAGGATCAGTGGCTACGACAGTTGGAACAGTGGTGGCATATCTATTGGTGCCGATGCGAGCGCTTGGTCCAGATAGTTGGAAAATAGCAGCTGCACTGATGGGAAGACACATTGGTGGAGCTGTCAATTATGTTGCCATAGCCGATGCTTTTGGGGTTTCTCCGTCAATTTTAGCTGCTGGACTAGCTGCAGATAATGTCATTTGTGCTGTATACTTTTCAACATTGTTTGCATTGGCTTCAAGAGTACCTGCAGAGGCTCCAATATCTGATACTGGCATTGCAATGGACGCAGGGTCCGACTCTGGAAACAAACTTCCTCTGGTACAAACTGCTACAGCCCTTGCCGTGTCCTTAGCCATCTGCAAGAGTGGCTATTATCTCACAAAATACTTTCGAATTCAAGGAGGTATCCTGCCAGCCGTAACAGCCATTGTGGTTGTTCTTGCGACTGTATTTCCAAAACAGTTTGCATATCTTGCACCATCTGGTGAGGCTATGGCCATGATCCTAATGCAGGTATTTTTCACGGTGGTGGGAGCAAGTGGAAGCATATGGAATGTGATTAACACTGCTCCTAGTATCTTCCTCTTTGCTTTAGTCCAGATTGCCGTCCATCTTGCTATGATTCTTGGATTGGGAAAGCTACTGGGATTCGACCTCAAGTTGTTGCTTATAGCATCAAATGCCAACGTTGGAGGCCCTACAACAGCTTGTGGAATGGCCACAGCCAAAGAATGGCATTCTATGGTTGTTCCTGGTATTCTTGCAGGCATCTTTGGCATTTCCATTGCAACTTTCCTCGGCATTGGATTTGGGGTCGCCGTTCTAAAAGCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF819

Protein Analysis

454

Amino Acids

47.06

Weight (kDa)

9.67

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF819 PF05684 90 - 452 7.1e-120 Protein of unknown function (DUF819)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 781, 1030
AccB1I GGYRCC 1 cut(s) 571
AccB7I CCANNNNNTGG 1 cut(s) 1260
AccI GTMKAC 1 cut(s) 735
AciI CCGC 5 cut(s) 120, 185, 210, 371, 470
AclI AACGTT 1 cut(s) 1215
AclWI GGATC 2 cut(s) 535, 1024
AcoI YGGCCR 3 cut(s) 3, 1023, 1245
AcsI RAATTY 1 cut(s) 921
AfaI GTAC 3 cut(s) 464, 771, 849
AfeI AGCGCT 1 cut(s) 585
AfiI CCNNNNNNNGG 3 cut(s) 122, 1039, 1260
AgsI TTSAA 3 cut(s) 744, 765, 926
AhdI GACNNNNNGTC 1 cut(s) 817
AjnI CCWGG 1 cut(s) 1279
AleI CACNNNNGTG 2 cut(s) 636, 1055
AluBI AGCT 9 cut(s) 19, 132, 223, 614, 644, 698, 710, 1168, 1235
AluI AGCT 9 cut(s) 19, 132, 223, 614, 644, 698, 710, 1168, 1235
Alw21I GWGCWC 2 cut(s) 276, 356
AlwI GGATC 2 cut(s) 535, 1024
Aor51HI AGCGCT 1 cut(s) 585
AoxI GGCC 5 cut(s) 3, 513, 1023, 1222, 1245
ApeKI GCWGC 7 cut(s) 129, 157, 505, 611, 614, 698, 710
ApoI RAATTY 1 cut(s) 921
AspLEI GCGC 4 cut(s) 290, 480, 505, 586
AspS9I GGNCC 4 cut(s) 267, 590, 819, 1223
AsuC2I CCSGG 2 cut(s) 33, 499
AsuHPI GGTGA 2 cut(s) 361, 1025
AsuII TTCGAA 1 cut(s) 919
AvaII GGWCC 3 cut(s) 267, 590, 819
BalI TGGCCA 3 cut(s) 5, 1025, 1247
BanI GGYRCC 1 cut(s) 571
BbsI GAAGAC 1 cut(s) 634
Bbv12I GWGCWC 2 cut(s) 276, 356
BbvI GCAGC 7 cut(s) 141, 169, 492, 601, 623, 685, 697
BccI CCATC 4 cut(s) 616, 890, 1015, 1146
BceAI ACGGC 5 cut(s) 465, 854, 929, 1118, 1331
BciT130I CCWGG 1 cut(s) 1281
BciVI GTATCC 1 cut(s) 944
BclI TGATCA 2 cut(s) 250, 486
BcnI CCSGG 2 cut(s) 33, 499
BfaI CTAG 3 cut(s) 524, 707, 1101
BfmI CTRYAG 3 cut(s) 711, 774, 858
BfoI RGCGCY 3 cut(s) 291, 506, 587
BfuAI ACCTGC 2 cut(s) 781, 1030
BfuI GTATCC 1 cut(s) 944
BisI GCNGC 8 cut(s) 130, 158, 372, 506, 612, 615, 699, 711
BlsI GCNGC 8 cut(s) 131, 159, 373, 507, 613, 616, 700, 712
Bme1390I CCNGG 3 cut(s) 33, 499, 1281
Bme18I GGWCC 3 cut(s) 267, 590, 819
BmeRI GACNNNNNGTC 1 cut(s) 817
BmgT120I GGNCC 4 cut(s) 267, 590, 819, 1223
BmiI GGNNCC 4 cut(s) 183, 573, 783, 820
BmrFI CCNGG 3 cut(s) 33, 499, 1281
BmrI ACTGGG 1 cut(s) 1181
BmsI GCATC 5 cut(s) 20, 567, 658, 1211, 1305
BmuI ACTGGG 1 cut(s) 1181
BpiI GAAGAC 1 cut(s) 634
Bpu10I CCTNAGC 1 cut(s) 877
Bpu14I TTCGAA 1 cut(s) 919
BpuEI CTTGAG 1 cut(s) 1169
BpuMI CCSGG 2 cut(s) 33, 499
BsaJI CCNNGG 3 cut(s) 6, 498, 1324
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 1039, 1260
Bse118I RCCGGY 4 cut(s) 52, 122, 284, 406
Bse1I ACTGG 3 cut(s) 269, 802, 1176
Bse3DI GCAATG 4 cut(s) 452, 801, 813, 1311
BseBI CCWGG 1 cut(s) 1281
BseDI CCNNGG 3 cut(s) 6, 498, 1324
BseLI CCNNNNNNNGG 3 cut(s) 122, 1039, 1260
BseMI GCAATG 4 cut(s) 452, 801, 813, 1311
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 3 cut(s) 269, 802, 1176
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 7 cut(s) 141, 169, 492, 601, 623, 685, 697
BsgI GTGCAG 1 cut(s) 600
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 5 cut(s) 5, 515, 1025, 1224, 1247
BshNI GGYRCC 1 cut(s) 571
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 2 cut(s) 276, 356
BsiSI CCGG 7 cut(s) 33, 53, 123, 179, 285, 407, 498
BslI CCNNNNNNNGG 3 cut(s) 122, 1039, 1260
BsmI GAATGC 2 cut(s) 406, 1264
BsnI GGCC 5 cut(s) 5, 515, 1025, 1224, 1247
Bsp119I TTCGAA 1 cut(s) 919
Bsp1286I GDGCHC 2 cut(s) 276, 356
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 5 cut(s) 200, 250, 486, 527, 1029
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 5 cut(s) 120, 185, 210, 371, 470
BspANI GGCC 5 cut(s) 5, 515, 1025, 1224, 1247
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 183, 573, 783, 820
BspMAI CTGCAG 2 cut(s) 715, 778
BspMI ACCTGC 2 cut(s) 781, 1030
BspPI GGATC 2 cut(s) 535, 1024
BspQI GCTCTTC 1 cut(s) 281
BspT104I TTCGAA 1 cut(s) 919
BspT107I GGYRCC 1 cut(s) 571
BsrDI GCAATG 4 cut(s) 452, 801, 813, 1311
BsrFI RCCGGY 4 cut(s) 52, 122, 284, 406
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 3 cut(s) 269, 802, 1176
BssAI RCCGGY 4 cut(s) 52, 122, 284, 406
BssECI CCNNGG 3 cut(s) 6, 498, 1324
BssMI GATC 5 cut(s) 200, 250, 486, 527, 1029
BssNAI GTATAC 1 cut(s) 736
BssT1I CCWWGG 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 736
Bst2UI CCWGG 1 cut(s) 1281
Bst4CI ACNGT 7 cut(s) 69, 271, 544, 553, 976, 990, 1054
Bst6I CTCTTC 1 cut(s) 281
BstAPI GCANNNNNTGC 2 cut(s) 1001, 1208
BstAUI TGTACA 1 cut(s) 462
BstBI TTCGAA 1 cut(s) 919
BstC8I GCNNGC 4 cut(s) 376, 582, 942, 1294
BstDEI CTNAG 2 cut(s) 95, 877
BstDSI CCRYGG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 1037
BstH2I RGCGCY 3 cut(s) 291, 506, 587
BstHHI GCGC 4 cut(s) 290, 480, 505, 586
BstKTI GATC 5 cut(s) 203, 253, 489, 530, 1032
BstMBI GATC 5 cut(s) 200, 250, 486, 527, 1029
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 8 cut(s) 287, 707, 812, 894, 950, 1001, 1208, 1302
BstNI CCWGG 1 cut(s) 1281
BstSCI CCNGG 3 cut(s) 31, 497, 1279
BstSFI CTRYAG 3 cut(s) 711, 774, 858
BstV1I GCAGC 7 cut(s) 141, 169, 492, 601, 623, 685, 697
BstV2I GAAGAC 1 cut(s) 634
BstXI CCANNNNNNTGG 1 cut(s) 600
BstZ17I GTATAC 1 cut(s) 736
BsuI GTATCC 1 cut(s) 944
BsuRI GGCC 5 cut(s) 5, 515, 1025, 1224, 1247
BtgI CCRYGG 1 cut(s) 6
BtsI GCAGTG 1 cut(s) 1092
BtsIMutI CAGTG 4 cut(s) 537, 558, 617, 1092
BveI ACCTGC 2 cut(s) 781, 1030
Cac8I GCNNGC 4 cut(s) 376, 582, 942, 1294
CfoI GCGC 4 cut(s) 290, 480, 505, 586
Cfr10I RCCGGY 4 cut(s) 52, 122, 284, 406
Cfr13I GGNCC 4 cut(s) 267, 590, 819, 1223
CseI GACGC 1 cut(s) 821
Csp6I GTAC 3 cut(s) 463, 770, 848
CviAII CATG 4 cut(s) 7, 248, 1027, 1360
CviQI GTAC 3 cut(s) 463, 770, 848
DdeI CTNAG 2 cut(s) 95, 877
DpnI GATC 5 cut(s) 202, 252, 488, 529, 1031
DpnII GATC 5 cut(s) 200, 250, 486, 527, 1029
DriI GACNNNNNGTC 1 cut(s) 817
EaeI YGGCCR 3 cut(s) 3, 1023, 1245
Eam1104I CTCTTC 1 cut(s) 281
Eam1105I GACNNNNNGTC 1 cut(s) 817
EarI CTCTTC 1 cut(s) 281
EciI GGCGGA 2 cut(s) 174, 485
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 3 cut(s) 267, 590, 819
Eco47III AGCGCT 1 cut(s) 585
EcoNI CCTNNNNNAGG 1 cut(s) 1037
EcoO109I RGGNCCY 1 cut(s) 1223
EcoRI GAATTC 1 cut(s) 921
EcoRII CCWGG 1 cut(s) 1279
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 4 cut(s) 10, 251, 1030, 1363
FatI CATG 4 cut(s) 6, 247, 1026, 1359
FauNDI CATATG 1 cut(s) 1076
FbaI TGATCA 2 cut(s) 250, 486
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 8 cut(s) 130, 158, 372, 506, 612, 615, 699, 711
Fsp4HI GCNGC 8 cut(s) 130, 158, 372, 506, 612, 615, 699, 711
FspBI CTAG 3 cut(s) 524, 707, 1101
GlaI GCGC 4 cut(s) 289, 479, 504, 585
GluI GCNGC 8 cut(s) 130, 158, 372, 506, 612, 615, 699, 711
HaeII RGCGCY 3 cut(s) 291, 506, 587
HaeIII GGCC 5 cut(s) 5, 515, 1025, 1224, 1247
HapII CCGG 7 cut(s) 33, 53, 123, 179, 285, 407, 498
HgaI GACGC 1 cut(s) 821
HhaI GCGC 4 cut(s) 290, 480, 505, 586
Hin1II CATG 4 cut(s) 10, 251, 1030, 1363
Hin6I GCGC 4 cut(s) 288, 478, 503, 584
HinP1I GCGC 4 cut(s) 288, 478, 503, 584
HinfI GANTC 4 cut(s) 216, 824, 1150, 1176
HpaII CCGG 7 cut(s) 33, 53, 123, 179, 285, 407, 498
HphI GGTGA 2 cut(s) 361, 1025
Hpy166II GTNNAC 1 cut(s) 736
Hpy188I TCNGA 6 cut(s) 96, 141, 196, 307, 793, 823
Hpy188III TCNNGA 4 cut(s) 593, 765, 828, 1126
Hpy8I GTNNAC 1 cut(s) 736
Hpy99I CGWCG 1 cut(s) 400
HpyAV CCTTC 1 cut(s) 526
HpyCH4III ACNGT 7 cut(s) 69, 271, 544, 553, 976, 990, 1054
HpyCH4IV ACGT 1 cut(s) 1215
HpyF10VI GCNNNNNNNGC 8 cut(s) 287, 707, 812, 894, 950, 1001, 1208, 1302
HpyF3I CTNAG 2 cut(s) 95, 877
HpySE526I ACGT 1 cut(s) 1215
Hsp92II CATG 4 cut(s) 10, 251, 1030, 1363
HspAI GCGC 4 cut(s) 288, 478, 503, 584
Ksp22I TGATCA 2 cut(s) 250, 486
Kzo9I GATC 5 cut(s) 200, 250, 486, 527, 1029
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 6 cut(s) 187, 228, 641, 787, 1061, 1102
Lsp1109I GCAGC 7 cut(s) 141, 169, 492, 601, 623, 685, 697
LweI GCATC 5 cut(s) 20, 567, 658, 1211, 1305
MaeI CTAG 3 cut(s) 524, 707, 1101
MaeII ACGT 1 cut(s) 1215
MaeIII GTNAC 4 cut(s) 60, 69, 205, 946
MalI GATC 5 cut(s) 202, 252, 488, 529, 1031
MboI GATC 5 cut(s) 200, 250, 486, 527, 1029
MboII GAAGA 4 cut(s) 268, 322, 639, 1099
MhlI GDGCHC 2 cut(s) 276, 356
MlsI TGGCCA 3 cut(s) 5, 1025, 1247
MluCI AATT 4 cut(s) 379, 649, 690, 921
MluNI TGGCCA 3 cut(s) 5, 1025, 1247
MlyI GAGTC 1 cut(s) 818
MmeI TCCRAC 7 cut(s) 219, 285, 405, 526, 581, 846, 1198
Mox20I TGGCCA 3 cut(s) 5, 1025, 1247
MscI TGGCCA 3 cut(s) 5, 1025, 1247
MseI TTAA 1 cut(s) 1089
MslI CAYNNNNRTG 4 cut(s) 76, 636, 806, 1055
Msp20I TGGCCA 3 cut(s) 5, 1025, 1247
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 7 cut(s) 33, 53, 123, 179, 285, 407, 498
MspR9I CCNGG 3 cut(s) 33, 499, 1281
Mva1269I GAATGC 2 cut(s) 406, 1264
MvaI CCWGG 1 cut(s) 1281
MwoI GCNNNNNNNGC 8 cut(s) 287, 707, 812, 894, 950, 1001, 1208, 1302
NciI CCSGG 2 cut(s) 33, 499
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 1076
NdeII GATC 5 cut(s) 200, 250, 486, 527, 1029
NlaIII CATG 4 cut(s) 10, 251, 1030, 1363
NlaIV GGNNCC 4 cut(s) 183, 573, 783, 820
NmeAIII GCCGAG 1 cut(s) 1305
NmuCI GTSAC 1 cut(s) 69
NspV TTCGAA 1 cut(s) 919
OliI CACNNNNGTG 2 cut(s) 636, 1055
PciSI GCTCTTC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 819
PctI GAATGC 2 cut(s) 406, 1264
PfeI GAWTC 3 cut(s) 216, 1150, 1176
PflMI CCANNNNNTGG 1 cut(s) 1260
PkrI GCNGC 8 cut(s) 131, 159, 373, 507, 613, 616, 700, 712
PleI GAGTC 1 cut(s) 818
PpsI GAGTC 1 cut(s) 818
Psp1406I AACGTT 1 cut(s) 1215
Psp6I CCWGG 1 cut(s) 1279
PspGI CCWGG 1 cut(s) 1279
PspN4I GGNNCC 4 cut(s) 183, 573, 783, 820
PspPI GGNCC 4 cut(s) 267, 590, 819, 1223
PstI CTGCAG 2 cut(s) 715, 778
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 3 cut(s) 464, 771, 849
RsaNI GTAC 3 cut(s) 463, 770, 848
RseI CAYNNNNRTG 4 cut(s) 76, 636, 806, 1055
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 1089
SatI GCNGC 8 cut(s) 130, 158, 372, 506, 612, 615, 699, 711
Sau3AI GATC 5 cut(s) 200, 250, 486, 527, 1029
Sau96I GGNCC 4 cut(s) 267, 590, 819, 1223
SchI GAGTC 1 cut(s) 818
ScrFI CCNGG 3 cut(s) 33, 499, 1281
SduI GDGCHC 2 cut(s) 276, 356
SfaNI GCATC 5 cut(s) 20, 567, 658, 1211, 1305
SfcI CTRYAG 3 cut(s) 711, 774, 858
SfuI TTCGAA 1 cut(s) 919
SgrAI CRCCGGYG 3 cut(s) 122, 284, 406
SinI GGWCC 3 cut(s) 267, 590, 819
SmiMI CAYNNNNRTG 4 cut(s) 76, 636, 806, 1055
SmlI CTYRAG 1 cut(s) 1184
SmoI CTYRAG 1 cut(s) 1184
Sse9I AATT 4 cut(s) 379, 649, 690, 921
SsiI CCGC 5 cut(s) 120, 185, 210, 371, 470
SspMI CTAG 3 cut(s) 524, 707, 1101
StyD4I CCNGG 3 cut(s) 31, 497, 1279
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 7 cut(s) 69, 271, 544, 553, 976, 990, 1054
TaiI ACGT 1 cut(s) 1218
TaqI TCGA 5 cut(s) 14, 398, 416, 919, 1179
TaqII GACCGA 2 cut(s) 92, 213
TasI AATT 4 cut(s) 379, 649, 690, 921
TatI WGTACW 1 cut(s) 462
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 3 cut(s) 216, 1150, 1176
Tru1I TTAA 1 cut(s) 1089
Tru9I TTAA 1 cut(s) 1089
TscAI CASTG 4 cut(s) 537, 558, 624, 1099
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 7 cut(s) 129, 157, 505, 611, 614, 698, 710
Tsp45I GTSAC 1 cut(s) 69
TspGWI ACGGA 2 cut(s) 13, 675
TspRI CASTG 4 cut(s) 537, 558, 624, 1099
Van91I CCANNNNNTGG 1 cut(s) 1260
VpaK11BI GGWCC 3 cut(s) 267, 590, 819
XagI CCTNNNNNAGG 1 cut(s) 1037
XapI RAATTY 1 cut(s) 921
XcmI CCANNNNNNNNNTGG 1 cut(s) 252
XmiI GTMKAC 1 cut(s) 735
XspI CTAG 3 cut(s) 524, 707, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.