Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000645.1

Orthogroup ID

OG0014435

Physical Location & Seq

Genomic Coordinates Reverse (-)

193626 .. 197069

Gene Structure 3444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000645.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1698 bp

atgactgtcacgaatgcgagtgcttcatgcgattccggccccgtcaggcccaccaccccattggtcacgttcctcgaacaagtaacacaaacggcgttgtccaccttcggaaaaccccacttcgaccccaaactctacgtcgatttggcgctcaagtccgacctgtcattcacccaagacgcctttcatgagcttcccaggtccgcaaacgggtcaacgtcggtcaatgatctcaatgagtttatacacaactactttgagggcgcaggggacgatgtggtgctcgctcagccggaggattatgtccccgagcctgaagggttcttgcccaaggtgaagaacccggaagtgagggcctgggctttggaggttcactcgctttggaagaacttgagccggaaggtggctggtggggtccacaagaggccggagtttcacactctgctacctctgcctgagcagttcattattcccggttcgaggttcagagaggtttattattgggactcttattgggttattaggggattgctagcaagcaaaatgtatgatacagcgaaagcaattgtgactaatctcattttcctcatagaagagtatggttacgtccttaatggtgcaagggcatattacactaacaggagccaaccaccccttctgagtgcaatggtttccgaaatctacaagaggacaggagatttggagttcgctagaaaagctctgcccgcactaatcaaagaacacgaattctggaattcaggtattcataaggtagttattcaggatgaccaagcttgtaatcacactttaagtcgatattatgcaatgtggaaccaacccaggcctgaatcttcaaccactgacaaggaacttgcttccaagatcgagaatgtttctgagaaacagcatttttaccgcgaagtggcttcaactgctgagactggatgggatttcagtacaagatggatgaggaaccattcagatttcacaacattgtccaccacatccattttaccagttgatttaaatgccttcttactgggaatggaacgtgacattgccttcctagcaaaagttacaggagacagcagcaattctgatcacttcctgaaggcttcggaagcaagacacaaggccattaaatctattttctggaatgcaaagaaggggcaatggcttgattactggctcaatgatagctcatgcaattcagaacctcagacatgggaagctcgtaaccaaaatgagaatgtatttgcttcaaacttcatccctttgtggatcgagtcattttactcagatacttctatggtccagaaagttactacaagtcttcaaagttcaggccttctttgcgctgctggaattgcaacatcactgacaaattcaggacaacaatgggactttccaaatggttgggctccaatccaacacatgatagctgaaggtctggcaaggtctggatcagaagaatcaaagttagtgggagaagaaattgctgtaaggtggatcagaaccaattataaagcctacaagaaaacaggtgtgatgcatgaaaaatatgatgtggaaaagtgtggagaatttggaggtggtggtgaatatgtaccccagactggttttgggtggtcaaatggacttgtattggcattcttggaggagtttggatggcctcaagatagaaagatagattgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004555 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005993 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015927 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044464 GO:0046352 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalase

Protein Analysis

565

Amino Acids

63.92

Weight (kDa)

5.6

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24040
fragaria_vesca	FvH4_5g11460 FvH4_5g11460 FvH4_5g11460 FvH4_5g11460
malus_domestica	MD06G1113500.v1.1
prunus_persica	Prupe.5G126300_v2.0.a1
pyrus_communis	pycom06g10610
rosa_chinensis	RchiOBHm_Chr7g0186361
rosa_laevigata	RLG00000004848
rosa_multiflora	Rmu_sc0000645.1_g000048
rosa_roxburghii	Rroxscaffold_3G00268180
rosa_rugosa	Rorug06G0473700
rosa_samantha	Rh7AG067600 Rh7CG080400 Rh7DG081000
rosa_wichuraiana	Rw7G006750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1524
AccII	CGCG	1 cut(s)	918
AciI	CCGC	3 cut(s)	204, 726, 916
AclWI	GGATC	3 cut(s)	1289, 1471, 1517
AcsI	RAATTY	4 cut(s)	746, 754, 1384, 1583
AcuI	CTGAAG	3 cut(s)	336, 1130, 1464
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	2 cut(s)	958, 1608
AfiI	CCNNNNNNNGG	5 cut(s)	210, 403, 480, 922, 1616
AgsI	TTSAA	4 cut(s)	855, 930, 1263, 1337
AjnI	CCWGG	3 cut(s)	197, 356, 839
AjuI	GAANNNNNNNTTGG	4 cut(s)	168, 200, 639, 671
AluBI	AGCT	6 cut(s)	193, 719, 794, 1200, 1232, 1442
AluI	AGCT	6 cut(s)	193, 719, 794, 1200, 1232, 1442
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	2 cut(s)	932, 1077
AlwI	GGATC	3 cut(s)	1289, 1471, 1517
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	8 cut(s)	37, 47, 354, 425, 842, 1134, 1345, 1670
ApeKI	GCWGC	2 cut(s)	1089, 1358
ApoI	RAATTY	4 cut(s)	746, 754, 1384, 1583
ArsI	GACNNNNNNTTYG	4 cut(s)	123, 155, 682, 714
AspLEI	GCGC	3 cut(s)	151, 266, 1358
AspS9I	GGNCC	6 cut(s)	38, 48, 201, 354, 415, 1312
AsuC2I	CCSGG	2 cut(s)	344, 474
AsuHPI	GGTGA	3 cut(s)	163, 346, 1610
AsuNHI	GCTAGC	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	3 cut(s)	201, 415, 1312
BanII	GRGCYC	1 cut(s)	1423
BbsI	GAAGAC	1 cut(s)	1325
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	1101, 1345
BccI	CCATC	3 cut(s)	939, 957, 1662
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	3 cut(s)	199, 358, 841
BclI	TGATCA	1 cut(s)	1099
BcnI	CCSGG	2 cut(s)	344, 474
BcoDI	GTCTC	2 cut(s)	932, 1077
BfaI	CTAG	3 cut(s)	533, 711, 1067
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	2 cut(s)	1090, 1359
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	2 cut(s)	1091, 1360
Bme1390I	CCNGG	5 cut(s)	199, 344, 358, 474, 841
Bme18I	GGWCC	3 cut(s)	201, 415, 1312
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	6 cut(s)	38, 48, 201, 354, 415, 1312
BmiI	GGNNCC	6 cut(s)	40, 416, 644, 833, 974, 1422
BmrFI	CCNGG	5 cut(s)	199, 344, 358, 474, 841
BmrI	ACTGGG	1 cut(s)	1049
BmsI	GCATC	1 cut(s)	1539
BmtI	GCTAGC	1 cut(s)	536
BmuI	ACTGGG	1 cut(s)	1049
BpiI	GAAGAC	1 cut(s)	1325
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	3 cut(s)	137, 412, 1659
BpuMI	CCSGG	2 cut(s)	344, 474
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	4 cut(s)	197, 330, 357, 839
Bsc4I	CCNNNNNNNGG	5 cut(s)	210, 403, 480, 922, 1616
Bse1I	ACTGG	5 cut(s)	946, 1016, 1044, 1190, 1621
Bse3DI	GCAATG	4 cut(s)	672, 831, 1056, 1178
BseBI	CCWGG	3 cut(s)	199, 358, 841
BseDI	CCNNGG	4 cut(s)	197, 330, 357, 839
BseGI	GGATG	6 cut(s)	790, 950, 972, 1004, 1269, 1673
BseLI	CCNNNNNNNGG	5 cut(s)	210, 403, 480, 922, 1616
BseMI	GCAATG	4 cut(s)	672, 831, 1056, 1178
BseMII	CTCAG	7 cut(s)	302, 447, 650, 888, 927, 1232, 1311
BseNI	ACTGG	5 cut(s)	946, 1016, 1044, 1190, 1621
BseRI	GAGGAG	1 cut(s)	1673
BseXI	GCAGC	2 cut(s)	1101, 1345
Bsh1236I	CGCG	1 cut(s)	918
BshFI	GGCC	8 cut(s)	39, 49, 356, 427, 844, 1136, 1347, 1672
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	6 cut(s)	36, 293, 344, 397, 428, 474
BslFI	GGGAC	4 cut(s)	284, 290, 518, 1415
BslI	CCNNNNNNNGG	5 cut(s)	210, 403, 480, 922, 1616
BsmAI	GTCTC	2 cut(s)	932, 1077
BsmFI	GGGAC	4 cut(s)	284, 290, 518, 1415
BsmI	GAATGC	3 cut(s)	19, 1162, 1649
BsnI	GGCC	8 cut(s)	39, 49, 356, 427, 844, 1136, 1347, 1672
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	285, 1423
Bsp143I	GATC	6 cut(s)	229, 882, 1099, 1281, 1463, 1509
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	3 cut(s)	204, 726, 916
BspANI	GGCC	8 cut(s)	39, 49, 356, 427, 844, 1136, 1347, 1672
BspCNI	CTCAG	7 cut(s)	301, 448, 651, 889, 928, 1231, 1310
BspFNI	CGCG	1 cut(s)	918
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	6 cut(s)	40, 416, 644, 833, 974, 1422
BspOI	GCTAGC	1 cut(s)	536
BspPI	GGATC	3 cut(s)	1289, 1471, 1517
BsrDI	GCAATG	4 cut(s)	672, 831, 1056, 1178
BsrI	ACTGG	5 cut(s)	946, 1016, 1044, 1190, 1621
BssECI	CCNNGG	4 cut(s)	197, 330, 357, 839
BssMI	GATC	6 cut(s)	229, 882, 1099, 1281, 1463, 1509
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	3 cut(s)	199, 358, 841
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	588
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	4 cut(s)	285, 534, 538, 726
BstDEI	CTNAG	7 cut(s)	288, 456, 659, 897, 936, 1218, 1297
BstF5I	GGATG	6 cut(s)	790, 950, 972, 1004, 1269, 1673
BstFNI	CGCG	1 cut(s)	918
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	3 cut(s)	151, 266, 1358
BstKTI	GATC	6 cut(s)	232, 885, 1102, 1284, 1466, 1512
BstMAI	GTCTC	2 cut(s)	932, 1077
BstMBI	GATC	6 cut(s)	229, 882, 1099, 1281, 1463, 1509
BstNI	CCWGG	3 cut(s)	199, 358, 841
BstSCI	CCNGG	5 cut(s)	197, 342, 356, 472, 839
BstUI	CGCG	1 cut(s)	918
BstV1I	GCAGC	2 cut(s)	1101, 1345
BstV2I	GAAGAC	1 cut(s)	1325
BstXI	CCANNNNNNTGG	2 cut(s)	61, 1416
BsuRI	GGCC	8 cut(s)	39, 49, 356, 427, 844, 1136, 1347, 1672
BtsCI	GGATG	6 cut(s)	790, 950, 972, 1004, 1269, 1673
BtsIMutI	CAGTG	2 cut(s)	858, 1376
Cac8I	GCNNGC	4 cut(s)	285, 534, 538, 726
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	3 cut(s)	151, 266, 1358
Cfr13I	GGNCC	6 cut(s)	38, 48, 201, 354, 415, 1312
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	957, 1607
CspCI	CAANNNNNGTGG	2 cut(s)	1464, 1499
CviAII	CATG	6 cut(s)	27, 188, 1203, 1224, 1435, 1553
CviQI	GTAC	2 cut(s)	957, 1607
DdeI	CTNAG	7 cut(s)	288, 456, 659, 897, 936, 1218, 1297
DpnI	GATC	6 cut(s)	231, 884, 1101, 1283, 1465, 1511
DpnII	GATC	6 cut(s)	229, 882, 1099, 1281, 1463, 1509
DraI	TTTAAA	1 cut(s)	1026
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	330
Eco147I	AGGCCT	2 cut(s)	844, 1347
Eco24I	GRGCYC	1 cut(s)	1423
Eco47I	GGWCC	3 cut(s)	201, 415, 1312
Eco57I	CTGAAG	3 cut(s)	336, 1130, 1464
Eco88I	CYCGRG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	354
EcoRI	GAATTC	2 cut(s)	746, 754
EcoRII	CCWGG	3 cut(s)	197, 356, 839
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	1554
EcoT38I	GRGCYC	1 cut(s)	1423
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	6 cut(s)	30, 191, 1206, 1227, 1438, 1556
FaqI	GGGAC	4 cut(s)	284, 290, 518, 1415
FatI	CATG	6 cut(s)	26, 187, 1202, 1223, 1434, 1552
FauI	CCCGC	1 cut(s)	733
FbaI	TGATCA	1 cut(s)	1099
Fnu4HI	GCNGC	2 cut(s)	1090, 1359
FokI	GGATG	6 cut(s)	797, 957, 979, 991, 1256, 1680
FriOI	GRGCYC	1 cut(s)	1423
Fsp4HI	GCNGC	2 cut(s)	1090, 1359
FspBI	CTAG	3 cut(s)	533, 711, 1067
GlaI	GCGC	3 cut(s)	150, 265, 1357
GluI	GCNGC	2 cut(s)	1090, 1359
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	8 cut(s)	39, 49, 356, 427, 844, 1136, 1347, 1672
HapII	CCGG	6 cut(s)	36, 293, 344, 397, 428, 474
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	3 cut(s)	151, 266, 1358
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	6 cut(s)	30, 191, 1206, 1227, 1438, 1556
Hin6I	GCGC	3 cut(s)	149, 264, 1356
HinP1I	GCGC	3 cut(s)	149, 264, 1356
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	792
HinfI	GANTC	5 cut(s)	32, 506, 848, 1286, 1472
HpaII	CCGG	6 cut(s)	36, 293, 344, 397, 428, 474
HphI	GGTGA	3 cut(s)	163, 346, 1610
Hpy166II	GTNNAC	5 cut(s)	102, 216, 373, 418, 999
Hpy8I	GTNNAC	5 cut(s)	102, 216, 373, 418, 999
Hpy99I	CGWCG	2 cut(s)	143, 223
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	5 cut(s)	68, 138, 218, 606, 1051
HpyCH4V	TGCA	7 cut(s)	620, 665, 824, 1160, 1206, 1370, 1552
HpyF3I	CTNAG	7 cut(s)	288, 456, 659, 897, 936, 1218, 1297
HpySE526I	ACGT	5 cut(s)	68, 138, 218, 606, 1051
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	6 cut(s)	30, 191, 1206, 1227, 1438, 1556
HspAI	GCGC	3 cut(s)	149, 264, 1356
Ksp22I	TGATCA	1 cut(s)	1099
Kzo9I	GATC	6 cut(s)	229, 882, 1099, 1281, 1463, 1509
LmnI	GCTCC	2 cut(s)	642, 1426
Lsp1109I	GCAGC	2 cut(s)	1101, 1345
LweI	GCATC	1 cut(s)	1539
MaeI	CTAG	3 cut(s)	533, 711, 1067
MaeII	ACGT	5 cut(s)	68, 138, 218, 606, 1051
MaeIII	GTNAC	9 cut(s)	7, 64, 82, 568, 602, 1052, 1075, 1235, 1321
MalI	GATC	6 cut(s)	231, 884, 1101, 1283, 1465, 1511
MboI	GATC	6 cut(s)	229, 882, 1099, 1281, 1463, 1509
MboII	GAAGA	7 cut(s)	349, 397, 605, 843, 1325, 1481, 1502
MfeI	CAATTG	1 cut(s)	564
MhlI	GDGCHC	2 cut(s)	285, 1423
MlyI	GAGTC	2 cut(s)	500, 1295
MmeI	TCCRAC	2 cut(s)	183, 1453
Mph1103I	ATGCAT	1 cut(s)	1554
MseI	TTAA	4 cut(s)	612, 809, 1025, 1140
MspI	CCGG	6 cut(s)	36, 293, 344, 397, 428, 474
MspR9I	CCNGG	5 cut(s)	199, 344, 358, 474, 841
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	3 cut(s)	19, 1162, 1649
MvaI	CCWGG	3 cut(s)	199, 358, 841
MvnI	CGCG	1 cut(s)	918
NciI	CCSGG	2 cut(s)	344, 474
NdeII	GATC	6 cut(s)	229, 882, 1099, 1281, 1463, 1509
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	6 cut(s)	30, 191, 1206, 1227, 1438, 1556
NlaIV	GGNNCC	6 cut(s)	40, 416, 644, 833, 974, 1422
NmuCI	GTSAC	4 cut(s)	7, 64, 568, 1052
NsiI	ATGCAT	1 cut(s)	1554
PagI	TCATGA	1 cut(s)	187
PceI	AGGCCT	2 cut(s)	844, 1347
PctI	GAATGC	3 cut(s)	19, 1162, 1649
PfeI	GAWTC	3 cut(s)	32, 848, 1472
PkrI	GCNGC	2 cut(s)	1091, 1360
PleI	GAGTC	2 cut(s)	500, 1294
PpsI	GAGTC	2 cut(s)	500, 1294
PsiI	TTATAA	1 cut(s)	1524
Psp6I	CCWGG	3 cut(s)	197, 356, 839
PspGI	CCWGG	3 cut(s)	197, 356, 839
PspN4I	GGNNCC	6 cut(s)	40, 416, 644, 833, 974, 1422
PspPI	GGNCC	6 cut(s)	38, 48, 201, 354, 415, 1312
RsaI	GTAC	2 cut(s)	958, 1608
RsaNI	GTAC	2 cut(s)	957, 1607
SaqAI	TTAA	4 cut(s)	612, 809, 1025, 1140
SatI	GCNGC	2 cut(s)	1090, 1359
Sau3AI	GATC	6 cut(s)	229, 882, 1099, 1281, 1463, 1509
Sau96I	GGNCC	6 cut(s)	38, 48, 201, 354, 415, 1312
SchI	GAGTC	2 cut(s)	500, 1295
ScrFI	CCNGG	5 cut(s)	199, 344, 358, 474, 841
SduI	GDGCHC	2 cut(s)	285, 1423
SfaNI	GCATC	1 cut(s)	1539
SinI	GGWCC	3 cut(s)	201, 415, 1312
SmiI	ATTTAAAT	1 cut(s)	1026
SmlI	CTYRAG	3 cut(s)	152, 391, 1674
SmoI	CTYRAG	3 cut(s)	152, 391, 1674
SseBI	AGGCCT	2 cut(s)	844, 1347
SsiI	CCGC	3 cut(s)	204, 726, 916
SspMI	CTAG	3 cut(s)	533, 711, 1067
StuI	AGGCCT	2 cut(s)	844, 1347
StyD4I	CCNGG	5 cut(s)	197, 342, 356, 472, 839
StyI	CCWWGG	1 cut(s)	330
SwaI	ATTTAAAT	1 cut(s)	1026
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	5 cut(s)	71, 141, 221, 609, 1054
TaqI	TCGA	7 cut(s)	75, 123, 141, 479, 814, 885, 1284
TaqII	GACCGA	1 cut(s)	211
TatI	WGTACW	1 cut(s)	956
TfiI	GAWTC	3 cut(s)	32, 848, 1472
Tru1I	TTAA	4 cut(s)	612, 809, 1025, 1140
Tru9I	TTAA	4 cut(s)	612, 809, 1025, 1140
TscAI	CASTG	2 cut(s)	865, 1383
TseFI	GTSAC	4 cut(s)	7, 64, 568, 1052
TseI	GCWGC	2 cut(s)	1089, 1358
Tsp45I	GTSAC	4 cut(s)	7, 64, 568, 1052
TspDTI	ATGAA	6 cut(s)	15, 176, 454, 755, 1258, 1569
TspRI	CASTG	2 cut(s)	865, 1383
VpaK11BI	GGWCC	3 cut(s)	201, 415, 1312
XapI	RAATTY	4 cut(s)	746, 754, 1384, 1583
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 1619
XspI	CTAG	3 cut(s)	533, 711, 1067
Zsp2I	ATGCAT	1 cut(s)	1554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.