Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0014435

Physical Location & Seq

Genomic Coordinates Forward (+)

5843469 .. 5847434

Gene Structure 3966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG080400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTATGATACAGCAAAAGCAATTGTGACTAATCTCATTTTCCTCATAGAAGAGTATGGTTACGTCCTTAATGGTGCAAGGGCCTATTACACTAACAGGAGCCAACCACCCCTTCTGAGTGCAATGGTTTCCGAAATCTACAAGAGGACAGGAGATTTGGAGTTCGCTAGAAAAGCTCTGCCCGCACTAATCAAAGAACATGAATTCTGGAATTCAGGTATTCATAAGGTAGTTATTCGGGATGACCAAGCTTGTAATCACACTTTAAGTCGATATTATGCAATGTGGAACCAACCCAGGCCTGAATCTTCAACCACTGACAAGGAACTTGCTTCCAAGATCGAGAATGTTTCTGAGAAACAGCATTTTTACCGCGAAGTGGCTTCAACTGCTGAGACTGGATGGGATTTCAGTACAAGATGGATGAGGAACCATTCAGATTTCACAACATTGTCCACCACATCCATTTTACCAGTTGATTTAAATGCCTTCATACTGGGAATGGAACGTGACATTGCCTTCCTAGCAAAAGTTACAGGAGACAGCAGCAATTCTGATCACTTCCTGAAGGCTTCGGAAGCAAGACACAAGGCCATTAAATCTGTTTTCTGGAATGCAAAGAAGGGGCAATGGCTTGATTACTGGCTCAATGATAGCTCATGCAATTCAGAACCTCAGACATGGGAAGCTCGTAACCAAAATAAGAATGTATTTGCTTCAAACTTCATCCCTTTGTGGATCGAGTCATTTTACTCAGATACTTCTATGGTCCAGAAAGTTACTACAAGTCTTCAAAGTTCAGGCCTTCTTCGCGCTGCTGGAATTGCAACGTCACTGACAAATTCAGGACAACAATGGGACTTTCCAAATGGTTGGGCTCCAATCCAACACATGATAGCTGAAGGTCTGGCAAGGTCTGGATCAGAAGAATCAAAGTTAGTGGGAGAAGAAATTTCTGTAAGGTGGATCAGAACCAATTATAAAGCCTACAAGAAAACAGGTGTGATGCATGAAAAATATGATGTGGAAAAGTGTGGAGAATTTGGAGGTGGTGGTGAATATGTACCCCAGACTGGTTTTGGGTGGTCAAATGGACTTGTATTGGCATTCTTGGAGGAGTTTGGATGGCCTCAAGATAGAAAGATAGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004555 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005993 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015927 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044464 GO:0046352 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalase

Protein Analysis

384

Amino Acids

43.65

Weight (kDa)

6.04

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalase	PF01204	1 - 375	1.3e-132	Trehalase
MGH1-like_GH	PF22422	31 - 341	6.3e-14	Mannosylglycerate hydrolase MGH1-like glycoside hydrolase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24040
fragaria_vesca	FvH4_5g11460 FvH4_5g11460 FvH4_5g11460 FvH4_5g11460
malus_domestica	MD06G1113500.v1.1
prunus_persica	Prupe.5G126300_v2.0.a1
pyrus_communis	pycom06g10610
rosa_chinensis	RchiOBHm_Chr7g0186361
rosa_laevigata	RLG00000004848
rosa_multiflora	Rmu_sc0000645.1_g000048
rosa_roxburghii	Rroxscaffold_3G00268180
rosa_rugosa	Rorug06G0473700
rosa_samantha	Rh7AG067600 Rh7CG080400 Rh7DG081000
rosa_wichuraiana	Rw7G006750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	981
AccII	CGCG	2 cut(s)	375, 813
AciI	CCGC	2 cut(s)	183, 373
AclWI	GGATC	3 cut(s)	746, 928, 974
AcsI	RAATTY	5 cut(s)	203, 211, 841, 951, 1040
AcuI	CTGAAG	2 cut(s)	587, 921
AfaI	GTAC	2 cut(s)	415, 1065
AfiI	CCNNNNNNNGG	2 cut(s)	379, 1073
AgsI	TTSAA	4 cut(s)	312, 387, 720, 794
AjnI	CCWGG	1 cut(s)	296
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	5 cut(s)	176, 251, 657, 689, 899
AluI	AGCT	5 cut(s)	176, 251, 657, 689, 899
Alw26I	GTCTC	2 cut(s)	389, 534
AlwI	GGATC	3 cut(s)	746, 928, 974
AoxI	GGCC	5 cut(s)	81, 299, 591, 802, 1127
ApeKI	GCWGC	2 cut(s)	546, 815
ApoI	RAATTY	5 cut(s)	203, 211, 841, 951, 1040
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AspLEI	GCGC	1 cut(s)	815
AspS9I	GGNCC	2 cut(s)	81, 769
AsuHPI	GGTGA	1 cut(s)	1067
AvaII	GGWCC	1 cut(s)	769
BanII	GRGCYC	1 cut(s)	880
BbsI	GAAGAC	1 cut(s)	782
BbvI	GCAGC	2 cut(s)	558, 802
BccI	CCATC	3 cut(s)	396, 414, 1119
BciT130I	CCWGG	1 cut(s)	298
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	389, 534
BfaI	CTAG	2 cut(s)	168, 524
BisI	GCNGC	2 cut(s)	547, 816
BlsI	GCNGC	2 cut(s)	548, 817
Bme1390I	CCNGG	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	769
BmgT120I	GGNCC	2 cut(s)	81, 769
BmiI	GGNNCC	4 cut(s)	101, 290, 431, 879
BmrFI	CCNGG	1 cut(s)	298
BmrI	ACTGGG	1 cut(s)	506
BmsI	GCATC	1 cut(s)	996
BmuI	ACTGGG	1 cut(s)	506
BpiI	GAAGAC	1 cut(s)	782
BpuEI	CTTGAG	1 cut(s)	1116
BsaJI	CCNNGG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 1073
Bse1I	ACTGG	5 cut(s)	403, 473, 501, 647, 1078
Bse3DI	GCAATG	4 cut(s)	129, 288, 513, 635
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	6 cut(s)	247, 407, 429, 461, 726, 1130
BseLI	CCNNNNNNNGG	2 cut(s)	379, 1073
BseMI	GCAATG	4 cut(s)	129, 288, 513, 635
BseMII	CTCAG	5 cut(s)	107, 345, 384, 689, 768
BseNI	ACTGG	5 cut(s)	403, 473, 501, 647, 1078
BseRI	GAGGAG	1 cut(s)	1130
BseXI	GCAGC	2 cut(s)	558, 802
Bsh1236I	CGCG	2 cut(s)	375, 813
BshFI	GGCC	5 cut(s)	83, 301, 593, 804, 1129
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	2 cut(s)	379, 1073
BsmAI	GTCTC	2 cut(s)	389, 534
BsmFI	GGGAC	1 cut(s)	872
BsmI	GAATGC	2 cut(s)	619, 1106
BsnI	GGCC	5 cut(s)	83, 301, 593, 804, 1129
Bsp1286I	GDGCHC	1 cut(s)	880
Bsp143I	GATC	5 cut(s)	339, 556, 738, 920, 966
BspACI	CCGC	2 cut(s)	183, 373
BspANI	GGCC	5 cut(s)	83, 301, 593, 804, 1129
BspCNI	CTCAG	5 cut(s)	108, 346, 385, 688, 767
BspFNI	CGCG	2 cut(s)	375, 813
BspLI	GGNNCC	4 cut(s)	101, 290, 431, 879
BspPI	GGATC	3 cut(s)	746, 928, 974
BsrDI	GCAATG	4 cut(s)	129, 288, 513, 635
BsrI	ACTGG	5 cut(s)	403, 473, 501, 647, 1078
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	5 cut(s)	339, 556, 738, 920, 966
Bst2UI	CCWGG	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	5 cut(s)	116, 354, 393, 675, 754
BstF5I	GGATG	6 cut(s)	247, 407, 429, 461, 726, 1130
BstFNI	CGCG	2 cut(s)	375, 813
BstHHI	GCGC	1 cut(s)	815
BstKTI	GATC	5 cut(s)	342, 559, 741, 923, 969
BstMAI	GTCTC	2 cut(s)	389, 534
BstMBI	GATC	5 cut(s)	339, 556, 738, 920, 966
BstMWI	GCNNNNNNNGC	7 cut(s)	173, 182, 389, 524, 578, 810, 824
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	296
BstUI	CGCG	2 cut(s)	375, 813
BstV1I	GCAGC	2 cut(s)	558, 802
BstV2I	GAAGAC	1 cut(s)	782
BstXI	CCANNNNNNTGG	1 cut(s)	873
BsuRI	GGCC	5 cut(s)	83, 301, 593, 804, 1129
BtsCI	GGATG	6 cut(s)	247, 407, 429, 461, 726, 1130
BtsIMutI	CAGTG	2 cut(s)	315, 833
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	815
Cfr13I	GGNCC	2 cut(s)	81, 769
Csp6I	GTAC	2 cut(s)	414, 1064
CspCI	CAANNNNNGTGG	2 cut(s)	921, 956
CviAII	CATG	5 cut(s)	200, 660, 681, 892, 1010
CviQI	GTAC	2 cut(s)	414, 1064
DdeI	CTNAG	5 cut(s)	116, 354, 393, 675, 754
DpnI	GATC	5 cut(s)	341, 558, 740, 922, 968
DpnII	GATC	5 cut(s)	339, 556, 738, 920, 966
DraI	TTTAAA	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco147I	AGGCCT	2 cut(s)	301, 804
Eco24I	GRGCYC	1 cut(s)	880
Eco47I	GGWCC	1 cut(s)	769
Eco57I	CTGAAG	2 cut(s)	587, 921
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRI	GAATTC	2 cut(s)	203, 211
EcoRII	CCWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	1011
EcoT38I	GRGCYC	1 cut(s)	880
FaeI	CATG	5 cut(s)	203, 663, 684, 895, 1013
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	5 cut(s)	199, 659, 680, 891, 1009
FauI	CCCGC	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	2 cut(s)	547, 816
FokI	GGATG	6 cut(s)	254, 414, 436, 448, 713, 1137
FriOI	GRGCYC	1 cut(s)	880
Fsp4HI	GCNGC	2 cut(s)	547, 816
FspBI	CTAG	2 cut(s)	168, 524
GlaI	GCGC	1 cut(s)	814
GluI	GCNGC	2 cut(s)	547, 816
HaeIII	GGCC	5 cut(s)	83, 301, 593, 804, 1129
HhaI	GCGC	1 cut(s)	815
Hin1II	CATG	5 cut(s)	203, 663, 684, 895, 1013
Hin6I	GCGC	1 cut(s)	813
HinP1I	GCGC	1 cut(s)	813
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	3 cut(s)	305, 743, 929
HphI	GGTGA	1 cut(s)	1067
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188III	TCNNGA	9 cut(s)	208, 239, 343, 565, 610, 772, 846, 918, 1133
Hpy8I	GTNNAC	1 cut(s)	456
HpyAV	CCTTC	7 cut(s)	122, 499, 529, 562, 616, 815, 896
HpyCH4IV	ACGT	3 cut(s)	63, 508, 830
HpyCH4V	TGCA	7 cut(s)	77, 122, 281, 617, 663, 827, 1009
HpyF10VI	GCNNNNNNNGC	7 cut(s)	173, 182, 389, 524, 578, 810, 824
HpyF3I	CTNAG	5 cut(s)	116, 354, 393, 675, 754
HpySE526I	ACGT	3 cut(s)	63, 508, 830
Hsp92II	CATG	5 cut(s)	203, 663, 684, 895, 1013
HspAI	GCGC	1 cut(s)	813
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	5 cut(s)	339, 556, 738, 920, 966
LmnI	GCTCC	2 cut(s)	99, 883
Lsp1109I	GCAGC	2 cut(s)	558, 802
LweI	GCATC	1 cut(s)	996
MaeI	CTAG	2 cut(s)	168, 524
MaeII	ACGT	3 cut(s)	63, 508, 830
MaeIII	GTNAC	7 cut(s)	25, 59, 509, 532, 692, 778, 831
MalI	GATC	5 cut(s)	341, 558, 740, 922, 968
MboI	GATC	5 cut(s)	339, 556, 738, 920, 966
MboII	GAAGA	6 cut(s)	62, 300, 782, 800, 938, 959
MfeI	CAATTG	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	880
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	1 cut(s)	910
MnlI	CCTC	7 cut(s)	53, 138, 420, 684, 1040, 1108, 1140
Mph1103I	ATGCAT	1 cut(s)	1011
MseI	TTAA	4 cut(s)	69, 266, 482, 597
MspR9I	CCNGG	1 cut(s)	298
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	2 cut(s)	619, 1106
MvaI	CCWGG	1 cut(s)	298
MvnI	CGCG	2 cut(s)	375, 813
MwoI	GCNNNNNNNGC	7 cut(s)	173, 182, 389, 524, 578, 810, 824
NdeII	GATC	5 cut(s)	339, 556, 738, 920, 966
NlaIII	CATG	5 cut(s)	203, 663, 684, 895, 1013
NlaIV	GGNNCC	4 cut(s)	101, 290, 431, 879
NmuCI	GTSAC	3 cut(s)	25, 509, 831
NsiI	ATGCAT	1 cut(s)	1011
PceI	AGGCCT	2 cut(s)	301, 804
PctI	GAATGC	2 cut(s)	619, 1106
PfeI	GAWTC	2 cut(s)	305, 929
PkrI	GCNGC	2 cut(s)	548, 817
PleI	GAGTC	1 cut(s)	751
PpsI	GAGTC	1 cut(s)	751
PsiI	TTATAA	1 cut(s)	981
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	4 cut(s)	101, 290, 431, 879
PspPI	GGNCC	2 cut(s)	81, 769
RsaI	GTAC	2 cut(s)	415, 1065
RsaNI	GTAC	2 cut(s)	414, 1064
SaqAI	TTAA	4 cut(s)	69, 266, 482, 597
SatI	GCNGC	2 cut(s)	547, 816
Sau3AI	GATC	5 cut(s)	339, 556, 738, 920, 966
Sau96I	GGNCC	2 cut(s)	81, 769
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	880
SfaNI	GCATC	1 cut(s)	996
SinI	GGWCC	1 cut(s)	769
SmiI	ATTTAAAT	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	1131
SmoI	CTYRAG	1 cut(s)	1131
SseBI	AGGCCT	2 cut(s)	301, 804
SsiI	CCGC	2 cut(s)	183, 373
SspMI	CTAG	2 cut(s)	168, 524
StuI	AGGCCT	2 cut(s)	301, 804
StyD4I	CCNGG	1 cut(s)	296
SwaI	ATTTAAAT	1 cut(s)	483
TaiI	ACGT	3 cut(s)	66, 511, 833
TaqI	TCGA	3 cut(s)	271, 342, 741
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	305, 929
Tru1I	TTAA	4 cut(s)	69, 266, 482, 597
Tru9I	TTAA	4 cut(s)	69, 266, 482, 597
TscAI	CASTG	2 cut(s)	322, 840
TseFI	GTSAC	3 cut(s)	25, 509, 831
TseI	GCWGC	2 cut(s)	546, 815
Tsp45I	GTSAC	3 cut(s)	25, 509, 831
TspDTI	ATGAA	5 cut(s)	212, 216, 481, 715, 1026
TspRI	CASTG	2 cut(s)	322, 840
VpaK11BI	GGWCC	1 cut(s)	769
XapI	RAATTY	5 cut(s)	203, 211, 841, 951, 1040
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1076
XspI	CTAG	2 cut(s)	168, 524
Zsp2I	ATGCAT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.