Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014435

Physical Location & Seq

Genomic Coordinates Forward (+)

6477811 .. 6481893

Gene Structure 4083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG081000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGAGAGCTGTTCATGATTCAATCTTACATCATTTTGAGACAAAACACAATTGGTTTGCTGGTGTAAGATGGCAATGGCACCTTAGTGTTCCAATTAACCAGGAAAATAGTTATATTTCAGGAACAATTATACAAACCTTGTTCCTTTTACTAATTTACATGAACTGGCTCTTCTTGGATATAATTTTATGTTGCAGGGGATTGCTAGCAAGCAAAATGTATGATACAGCAAAAGCAATTGTGACTAATCTCATTTTCCTCATAGAAGAGTATGGTTACGTCCTTAATGGTGCAAGGGCATATTACACTAACAGGAGCCAACCACCCCTTCTGAGTGCAATGGTTTCCGAAATCTACAAGAGGACAGGAGATTTGGAGTTCGCTAGAAAAGCTCTGCCCGCACTAATCAAAGAACACGAATTCTGGAATTCAGGTATTCATAAGGTAGTTATTCAGGATGACCAAGCTTGTAATCACACTTTAAGTCGATATTATGCAATGTGGAACCAACCCAGGCCTGAATCTTCAACCACTGACAAGGAACTTGCTTCCAAGATCGAGAATGTTTCTGAGAAACAGCATTTTTACCGCGAAGTGGCTTCAACTGCTGAGACTGGATGGGATTTCAGTACAAGATGGATGAGGAACCATTCAGATTTCACAACATTGTCCACCACATCCATTTTACCAGTTGATTTAAATGCCTTCTTACTGGGAATGGAACGTGACATTGCCTTCCTAGCAAAAGTTACAGGAGACAGCAGCAATTCTGATCACTTCCTGAAGGCTTCGGAAGCAAGACACAAGGCCATTAAATCTGTTTTCTGGAATGCAAAGAAGGGGCAATGGCTTGATTACTGGCTCAATGATAGCTCATGCAATTCAGAACCTCAGACATGGGAAGCTCGTAACCAAAATGAGAATGTATTTGCTTCAAACTTCATCCCTTTGTGGATCGAGTCATTTTACTCAGATACTTCTATGGTCCAGAAAGTTACTACAAGTCTTCAAAGTTCAGGCCTTCTTCGCGCTGCTGGAATTGCAACATCACTGACAAATTCAGGACAACAATGGGACTTTCCAAATGGTTGGGCTCCAATCCAACACATGATAGCTGAAGGTCTGGCAAGGTCTGGATCAGAAGAATCAAAGTTAGTGGGAGAAGAAATTGCTGTAAGGTGGATCAGAACCAATTATAAAGCCTACAAGAAAACAGGTGTGATGCATGAAAAATATGATGTGGAAAAGTGTGGAGAATTTGGAGGTGGTGGTGAATATGTACCCCAGACTGGTTTTGGGTGGTCAAATGGACTTGTATTGGCATTCTTGGAGGAGTTTGGATGGCCTCAAGATAGAAAGATAGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004555 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005993 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015927 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044464 GO:0046352 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalase

Protein Analysis

456

Amino Acids

52.15

Weight (kDa)

6.08

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalase	PF01204	64 - 447	3.2e-138	Trehalase
MGH1-like_GH	PF22422	103 - 420	4e-14	Mannosylglycerate hydrolase MGH1-like glycoside hydrolase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24040
fragaria_vesca	FvH4_5g11460 FvH4_5g11460 FvH4_5g11460 FvH4_5g11460
malus_domestica	MD06G1113500.v1.1
prunus_persica	Prupe.5G126300_v2.0.a1
pyrus_communis	pycom06g10610
rosa_chinensis	RchiOBHm_Chr7g0186361
rosa_laevigata	RLG00000004848
rosa_multiflora	Rmu_sc0000645.1_g000048
rosa_roxburghii	Rroxscaffold_3G00268180
rosa_rugosa	Rorug06G0473700
rosa_samantha	Rh7AG067600 Rh7CG080400 Rh7DG081000
rosa_wichuraiana	Rw7G006750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1197
AccB1I	GGYRCC	1 cut(s)	78
AccII	CGCG	2 cut(s)	591, 1029
AciI	CCGC	2 cut(s)	399, 589
AclWI	GGATC	3 cut(s)	962, 1144, 1190
AcsI	RAATTY	4 cut(s)	419, 427, 1057, 1256
AcuI	CTGAAG	2 cut(s)	803, 1137
AfaI	GTAC	2 cut(s)	631, 1281
AfiI	CCNNNNNNNGG	2 cut(s)	595, 1289
AgsI	TTSAA	5 cut(s)	21, 528, 603, 936, 1010
AjnI	CCWGG	2 cut(s)	99, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AleI	CACNNNNGTG	1 cut(s)	84
AluBI	AGCT	6 cut(s)	8, 392, 467, 873, 905, 1115
AluI	AGCT	6 cut(s)	8, 392, 467, 873, 905, 1115
Alw26I	GTCTC	3 cut(s)	32, 605, 750
AlwI	GGATC	3 cut(s)	962, 1144, 1190
AoxI	GGCC	4 cut(s)	515, 807, 1018, 1343
ApeKI	GCWGC	2 cut(s)	762, 1031
ApoI	RAATTY	4 cut(s)	419, 427, 1057, 1256
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AspLEI	GCGC	1 cut(s)	1031
AspS9I	GGNCC	1 cut(s)	985
AsuHPI	GGTGA	1 cut(s)	1283
AsuNHI	GCTAGC	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	985
BanI	GGYRCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	1096
BbsI	GAAGAC	1 cut(s)	998
BbvI	GCAGC	2 cut(s)	774, 1018
BccI	CCATC	4 cut(s)	63, 612, 630, 1335
BciT130I	CCWGG	2 cut(s)	101, 514
BclI	TGATCA	1 cut(s)	772
BcoDI	GTCTC	3 cut(s)	32, 605, 750
BfaI	CTAG	3 cut(s)	206, 384, 740
BisI	GCNGC	2 cut(s)	763, 1032
BlsI	GCNGC	2 cut(s)	764, 1033
Bme1390I	CCNGG	2 cut(s)	101, 514
Bme18I	GGWCC	1 cut(s)	985
BmgT120I	GGNCC	1 cut(s)	985
BmiI	GGNNCC	5 cut(s)	80, 317, 506, 647, 1095
BmrFI	CCNGG	2 cut(s)	101, 514
BmrI	ACTGGG	1 cut(s)	722
BmsI	GCATC	1 cut(s)	1212
BmtI	GCTAGC	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	998
BpuEI	CTTGAG	1 cut(s)	1332
BsaJI	CCNNGG	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 1289
Bse1I	ACTGG	6 cut(s)	170, 619, 689, 717, 863, 1294
Bse3DI	GCAATG	5 cut(s)	80, 345, 504, 729, 851
BseBI	CCWGG	2 cut(s)	101, 514
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	6 cut(s)	463, 623, 645, 677, 942, 1346
BseLI	CCNNNNNNNGG	2 cut(s)	595, 1289
BseMI	GCAATG	5 cut(s)	80, 345, 504, 729, 851
BseMII	CTCAG	5 cut(s)	323, 561, 600, 905, 984
BseNI	ACTGG	6 cut(s)	170, 619, 689, 717, 863, 1294
BseRI	GAGGAG	1 cut(s)	1346
BseXI	GCAGC	2 cut(s)	774, 1018
Bsh1236I	CGCG	2 cut(s)	591, 1029
BshFI	GGCC	4 cut(s)	517, 809, 1020, 1345
BshNI	GGYRCC	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	1088
BslI	CCNNNNNNNGG	2 cut(s)	595, 1289
BsmAI	GTCTC	3 cut(s)	32, 605, 750
BsmFI	GGGAC	1 cut(s)	1088
BsmI	GAATGC	2 cut(s)	835, 1322
BsnI	GGCC	4 cut(s)	517, 809, 1020, 1345
Bsp1286I	GDGCHC	1 cut(s)	1096
Bsp143I	GATC	5 cut(s)	555, 772, 954, 1136, 1182
BspACI	CCGC	2 cut(s)	399, 589
BspANI	GGCC	4 cut(s)	517, 809, 1020, 1345
BspCNI	CTCAG	5 cut(s)	324, 562, 601, 904, 983
BspFNI	CGCG	2 cut(s)	591, 1029
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	5 cut(s)	80, 317, 506, 647, 1095
BspOI	GCTAGC	1 cut(s)	209
BspPI	GGATC	3 cut(s)	962, 1144, 1190
BspQI	GCTCTTC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	78
BsrDI	GCAATG	5 cut(s)	80, 345, 504, 729, 851
BsrI	ACTGG	6 cut(s)	170, 619, 689, 717, 863, 1294
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	5 cut(s)	555, 772, 954, 1136, 1182
Bst2UI	CCWGG	2 cut(s)	101, 514
Bst6I	CTCTTC	2 cut(s)	176, 261
BstC8I	GCNNGC	3 cut(s)	207, 211, 399
BstDEI	CTNAG	6 cut(s)	83, 332, 570, 609, 891, 970
BstF5I	GGATG	6 cut(s)	463, 623, 645, 677, 942, 1346
BstFNI	CGCG	2 cut(s)	591, 1029
BstHHI	GCGC	1 cut(s)	1031
BstKTI	GATC	5 cut(s)	558, 775, 957, 1139, 1185
BstMAI	GTCTC	3 cut(s)	32, 605, 750
BstMBI	GATC	5 cut(s)	555, 772, 954, 1136, 1182
BstMWI	GCNNNNNNNGC	7 cut(s)	389, 398, 605, 740, 794, 1026, 1040
BstNI	CCWGG	2 cut(s)	101, 514
BstSCI	CCNGG	2 cut(s)	99, 512
BstUI	CGCG	2 cut(s)	591, 1029
BstV1I	GCAGC	2 cut(s)	774, 1018
BstV2I	GAAGAC	1 cut(s)	998
BstXI	CCANNNNNNTGG	1 cut(s)	1089
BsuRI	GGCC	4 cut(s)	517, 809, 1020, 1345
BtsCI	GGATG	6 cut(s)	463, 623, 645, 677, 942, 1346
BtsIMutI	CAGTG	2 cut(s)	531, 1049
Cac8I	GCNNGC	3 cut(s)	207, 211, 399
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	1 cut(s)	1031
Cfr13I	GGNCC	1 cut(s)	985
Csp6I	GTAC	2 cut(s)	630, 1280
CspCI	CAANNNNNGTGG	2 cut(s)	1137, 1172
CviAII	CATG	6 cut(s)	14, 160, 876, 897, 1108, 1226
CviQI	GTAC	2 cut(s)	630, 1280
DdeI	CTNAG	6 cut(s)	83, 332, 570, 609, 891, 970
DpnI	GATC	5 cut(s)	557, 774, 956, 1138, 1184
DpnII	GATC	5 cut(s)	555, 772, 954, 1136, 1182
DraI	TTTAAA	1 cut(s)	699
Eam1104I	CTCTTC	2 cut(s)	176, 261
EarI	CTCTTC	2 cut(s)	176, 261
Eco147I	AGGCCT	2 cut(s)	517, 1020
Eco24I	GRGCYC	1 cut(s)	1096
Eco47I	GGWCC	1 cut(s)	985
Eco57I	CTGAAG	2 cut(s)	803, 1137
EcoRI	GAATTC	2 cut(s)	419, 427
EcoRII	CCWGG	2 cut(s)	99, 512
EcoT22I	ATGCAT	1 cut(s)	1227
EcoT38I	GRGCYC	1 cut(s)	1096
FaeI	CATG	6 cut(s)	17, 163, 879, 900, 1111, 1229
FaqI	GGGAC	1 cut(s)	1088
FatI	CATG	6 cut(s)	13, 159, 875, 896, 1107, 1225
FauI	CCCGC	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	2 cut(s)	763, 1032
FokI	GGATG	6 cut(s)	470, 630, 652, 664, 929, 1353
FriOI	GRGCYC	1 cut(s)	1096
Fsp4HI	GCNGC	2 cut(s)	763, 1032
FspBI	CTAG	3 cut(s)	206, 384, 740
GlaI	GCGC	1 cut(s)	1030
GluI	GCNGC	2 cut(s)	763, 1032
HaeIII	GGCC	4 cut(s)	517, 809, 1020, 1345
HhaI	GCGC	1 cut(s)	1031
Hin1II	CATG	6 cut(s)	17, 163, 879, 900, 1111, 1229
Hin6I	GCGC	1 cut(s)	1029
HinP1I	GCGC	1 cut(s)	1029
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	4 cut(s)	17, 521, 959, 1145
HphI	GGTGA	1 cut(s)	1283
Hpy166II	GTNNAC	1 cut(s)	672
Hpy8I	GTNNAC	1 cut(s)	672
HpyAV	CCTTC	7 cut(s)	338, 715, 745, 778, 832, 1031, 1112
HpyCH4IV	ACGT	2 cut(s)	279, 724
HpyCH4V	TGCA	8 cut(s)	195, 293, 338, 497, 833, 879, 1043, 1225
HpyF10VI	GCNNNNNNNGC	7 cut(s)	389, 398, 605, 740, 794, 1026, 1040
HpyF3I	CTNAG	6 cut(s)	83, 332, 570, 609, 891, 970
HpySE526I	ACGT	2 cut(s)	279, 724
Hsp92II	CATG	6 cut(s)	17, 163, 879, 900, 1111, 1229
HspAI	GCGC	1 cut(s)	1029
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	5 cut(s)	555, 772, 954, 1136, 1182
LguI	GCTCTTC	1 cut(s)	176
LmnI	GCTCC	2 cut(s)	315, 1099
Lsp1109I	GCAGC	2 cut(s)	774, 1018
LweI	GCATC	1 cut(s)	1212
MaeI	CTAG	3 cut(s)	206, 384, 740
MaeII	ACGT	2 cut(s)	279, 724
MaeIII	GTNAC	6 cut(s)	241, 275, 725, 748, 908, 994
MalI	GATC	5 cut(s)	557, 774, 956, 1138, 1184
MboI	GATC	5 cut(s)	555, 772, 954, 1136, 1182
MboII	GAAGA	7 cut(s)	163, 278, 516, 998, 1016, 1154, 1175
MfeI	CAATTG	2 cut(s)	49, 237
MhlI	GDGCHC	1 cut(s)	1096
MlyI	GAGTC	1 cut(s)	968
MmeI	TCCRAC	1 cut(s)	1126
MnlI	CCTC	7 cut(s)	269, 354, 636, 900, 1256, 1324, 1356
Mph1103I	ATGCAT	1 cut(s)	1227
MseI	TTAA	5 cut(s)	96, 285, 482, 698, 813
MslI	CAYNNNNRTG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	101, 514
MunI	CAATTG	2 cut(s)	49, 237
Mva1269I	GAATGC	2 cut(s)	835, 1322
MvaI	CCWGG	2 cut(s)	101, 514
MvnI	CGCG	2 cut(s)	591, 1029
MwoI	GCNNNNNNNGC	7 cut(s)	389, 398, 605, 740, 794, 1026, 1040
NdeII	GATC	5 cut(s)	555, 772, 954, 1136, 1182
NheI	GCTAGC	1 cut(s)	205
NlaIII	CATG	6 cut(s)	17, 163, 879, 900, 1111, 1229
NlaIV	GGNNCC	5 cut(s)	80, 317, 506, 647, 1095
NmuCI	GTSAC	2 cut(s)	241, 725
NsiI	ATGCAT	1 cut(s)	1227
OliI	CACNNNNGTG	1 cut(s)	84
PagI	TCATGA	1 cut(s)	13
PceI	AGGCCT	2 cut(s)	517, 1020
PciSI	GCTCTTC	1 cut(s)	176
PctI	GAATGC	2 cut(s)	835, 1322
PfeI	GAWTC	3 cut(s)	17, 521, 1145
PkrI	GCNGC	2 cut(s)	764, 1033
PleI	GAGTC	1 cut(s)	967
PpsI	GAGTC	1 cut(s)	967
PsiI	TTATAA	1 cut(s)	1197
Psp6I	CCWGG	2 cut(s)	99, 512
PspGI	CCWGG	2 cut(s)	99, 512
PspN4I	GGNNCC	5 cut(s)	80, 317, 506, 647, 1095
PspPI	GGNCC	1 cut(s)	985
RsaI	GTAC	2 cut(s)	631, 1281
RsaNI	GTAC	2 cut(s)	630, 1280
RseI	CAYNNNNRTG	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	5 cut(s)	96, 285, 482, 698, 813
SatI	GCNGC	2 cut(s)	763, 1032
Sau3AI	GATC	5 cut(s)	555, 772, 954, 1136, 1182
Sau96I	GGNCC	1 cut(s)	985
SchI	GAGTC	1 cut(s)	968
ScrFI	CCNGG	2 cut(s)	101, 514
SduI	GDGCHC	1 cut(s)	1096
SfaNI	GCATC	1 cut(s)	1212
SinI	GGWCC	1 cut(s)	985
SmiI	ATTTAAAT	1 cut(s)	699
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	1347
SmoI	CTYRAG	1 cut(s)	1347
SseBI	AGGCCT	2 cut(s)	517, 1020
SsiI	CCGC	2 cut(s)	399, 589
SspMI	CTAG	3 cut(s)	206, 384, 740
StuI	AGGCCT	2 cut(s)	517, 1020
StyD4I	CCNGG	2 cut(s)	99, 512
SwaI	ATTTAAAT	1 cut(s)	699
TaiI	ACGT	2 cut(s)	282, 727
TaqI	TCGA	3 cut(s)	487, 558, 957
TatI	WGTACW	1 cut(s)	629
TfiI	GAWTC	3 cut(s)	17, 521, 1145
Tru1I	TTAA	5 cut(s)	96, 285, 482, 698, 813
Tru9I	TTAA	5 cut(s)	96, 285, 482, 698, 813
TscAI	CASTG	2 cut(s)	538, 1056
TseFI	GTSAC	2 cut(s)	241, 725
TseI	GCWGC	2 cut(s)	762, 1031
Tsp45I	GTSAC	2 cut(s)	241, 725
TspDTI	ATGAA	4 cut(s)	176, 428, 931, 1242
TspRI	CASTG	2 cut(s)	538, 1056
VpaK11BI	GGWCC	1 cut(s)	985
XapI	RAATTY	4 cut(s)	419, 427, 1057, 1256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1292
XspI	CTAG	3 cut(s)	206, 384, 740
Zsp2I	ATGCAT	1 cut(s)	1227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.