Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000675.1

Orthogroup ID

OG0018950

Physical Location & Seq

Genomic Coordinates Reverse (-)

221446 .. 221883

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000675.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgggagatggagaagtcgaactggaaatgaagataaatatgtacccaccatgcccacaaccccaacgagtccttggcgttgagcctcacaccgacatgtccaccctcaccttactgcaggtttcaaacgatgatcctggtcttcagctgtggaaagatgacaattgggttgctgtgaattatctaccaaatgcagtctttgttaacattggtgatcagatagaggtcttgagcaatgataagtacaagagtattcttcacagaagctgggtgaacatgaagcggttacacatgtcgtgggctatgttcattgtggcgccacatgaagctgtgattgggcctctgtgggagcttgtggacgagcaaaatcctaccaaatactcaaccaaaacatatggtgaataccgaaaccacaaattcaataagatcccacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

145

Amino Acids

16.8

Weight (kDa)

5.45

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018950)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327961 RchiOBHm_Chr6g0295261
rosa_multiflora	Rmu_sc0000035.1_g000025 Rmu_sc0000675.1_g000057 Rmu_sc0030162.1_g000001 Rmu_sc0033102.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441430
rosa_samantha	Rh1DG093200 Rh6CG377300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	316
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	128, 421
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	2 cut(s)	44, 245
AflIII	ACRYGT	2 cut(s)	96, 291
AgsI	TTSAA	2 cut(s)	126, 421
AjnI	CCWGG	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	4 cut(s)	148, 267, 329, 352
AluI	AGCT	4 cut(s)	148, 267, 329, 352
AlwI	GGATC	2 cut(s)	128, 421
AlwNI	CAGNNNCTG	1 cut(s)	267
AoxI	GGCC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	4 cut(s)	100, 224, 283, 410
BanI	GGYRCC	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	134
BccI	CCATC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	138
BclI	TGATCA	1 cut(s)	214
BfmI	CTRYAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	267
BshFI	GGCC	1 cut(s)	340
BshNI	GGYRCC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	340
Bsp143I	GATC	3 cut(s)	133, 214, 426
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	128, 421
BspT107I	GGYRCC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	3 cut(s)	133, 214, 426
BssNI	GRCGYC	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	317
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	3 cut(s)	136, 217, 429
BstMBI	GATC	3 cut(s)	133, 214, 426
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	2 cut(s)	100, 295
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	267
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	43, 244
CviAII	CATG	5 cut(s)	51, 97, 277, 292, 323
CviJI	RGCY	7 cut(s)	85, 148, 267, 302, 329, 340, 352
CviKI_1	RGCY	7 cut(s)	85, 148, 267, 302, 329, 340, 352
CviQI	GTAC	2 cut(s)	43, 244
DinI	GGCGCC	1 cut(s)	318
DpnI	GATC	3 cut(s)	135, 216, 428
DpnII	GATC	3 cut(s)	133, 214, 426
Eco130I	CCWWGG	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	73
EgeI	GGCGCC	1 cut(s)	318
EheI	GGCGCC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	5 cut(s)	54, 100, 280, 295, 326
FaiI	YATR	9 cut(s)	41, 52, 98, 278, 293, 305, 324, 394, 396
FatI	CATG	5 cut(s)	50, 96, 276, 291, 322
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	214
GlaI	GCGC	1 cut(s)	318
GsaI	CCCAGC	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	5 cut(s)	54, 100, 280, 295, 326
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	69
HpaI	GTTAAC	1 cut(s)	205
HphI	GGTGA	4 cut(s)	100, 224, 283, 410
Hpy166II	GTNNAC	4 cut(s)	102, 205, 274, 358
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	4 cut(s)	102, 205, 274, 358
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4V	TGCA	2 cut(s)	118, 194
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	5 cut(s)	54, 100, 280, 295, 326
HspAI	GCGC	1 cut(s)	317
KasI	GGCGCC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	214
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	133, 214, 426
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	5 cut(s)	8, 104, 123, 150, 253
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	3 cut(s)	135, 216, 428
MboI	GATC	3 cut(s)	133, 214, 426
MboII	GAAGA	3 cut(s)	43, 134, 248
MfeI	CAATTG	1 cut(s)	163
MflI	RGATCY	1 cut(s)	426
MluCI	AATT	3 cut(s)	163, 178, 416
Mly113I	GGCGCC	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	4 cut(s)	96, 116, 217, 351
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	138
NarI	GGCGCC	1 cut(s)	317
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	3 cut(s)	133, 214, 426
NlaIII	CATG	5 cut(s)	54, 100, 280, 295, 326
NlaIV	GGNNCC	1 cut(s)	318
NspI	RCATGY	2 cut(s)	100, 295
PciI	ACATGT	2 cut(s)	96, 291
PleI	GAGTC	1 cut(s)	77
PluTI	GGCGCC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	77
PscI	ACATGT	2 cut(s)	96, 291
Psp6I	CCWGG	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	426
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	44, 245
RsaNI	GTAC	2 cut(s)	43, 244
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	3 cut(s)	133, 214, 426
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	7 cut(s)	113, 123, 150, 228, 269, 331, 354
SfcI	CTRYAG	1 cut(s)	116
SfoI	GGCGCC	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	3 cut(s)	163, 178, 416
SsiI	CCGC	1 cut(s)	283
SspDI	GGCGCC	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	18
TasI	AATT	3 cut(s)	163, 178, 416
TatI	WGTACW	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TspDTI	ATGAA	4 cut(s)	44, 293, 298, 339
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	2 cut(s)	100, 295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.