Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030162.1

Orthogroup ID

OG0018950

Physical Location & Seq

Genomic Coordinates Reverse (-)

4199 .. 4711

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030162.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgctgagagtaacatacaagctattggaggtgctttcagagggtctaggcctggataggaaggtattgaaatcccatatgggagatggagaagtggaactggaaatgaagataaatatgtacccgccatgcccacaacccgaactagcccttggcgttgagcctcacaccgacatgtctgccctcaccttactggtttcaaacgatgatcctggtcttcagctgtggaaagatgacaattgggttgctgtgaattacctgccacatgcagtctttattaacattggtgatcagatggaggtcttgagcaatggtaagtacaagagtattcttcacaggagcttggtgaacaagaagcggttacgcatgtcgtgggctgtgttcattgtgccgccacatgaagctgtgattgggcctctgcgggagcttgtggacgagcaaaatcctgccaaatactcaaccaaaacatatggtaaataccgacaccgcaaattcaacaacatcccacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

170

Amino Acids

19.45

Weight (kDa)

7.85

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018950)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327961 RchiOBHm_Chr6g0295261
rosa_multiflora	Rmu_sc0000035.1_g000025 Rmu_sc0000675.1_g000057 Rmu_sc0030162.1_g000001 Rmu_sc0033102.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441430
rosa_samantha	Rh1DG093200 Rh6CG377300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AciI	CCGC	5 cut(s)	125, 358, 392, 421, 487
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	2 cut(s)	122, 320
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	3 cut(s)	70, 201, 496
AjnI	CCWGG	2 cut(s)	51, 211
AjuI	GAANNNNNNNTTGG	4 cut(s)	135, 167, 393, 425
AluBI	AGCT	5 cut(s)	22, 223, 342, 404, 427
AluI	AGCT	5 cut(s)	22, 223, 342, 404, 427
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	2 cut(s)	49, 413
ApoI	RAATTY	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	3 cut(s)	178, 299, 358
BbsI	GAAGAC	1 cut(s)	209
BccI	CCATC	2 cut(s)	80, 289
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	2 cut(s)	53, 213
BclI	TGATCA	1 cut(s)	289
BfaI	CTAG	2 cut(s)	47, 146
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
Bme1390I	CCNGG	2 cut(s)	53, 213
BmgT120I	GGNCC	1 cut(s)	413
BmrFI	CCNGG	2 cut(s)	53, 213
BpiI	GAAGAC	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	105, 198
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	2 cut(s)	53, 213
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	501
BseMI	GCAATG	1 cut(s)	316
BseNI	ACTGG	2 cut(s)	105, 198
BshFI	GGCC	2 cut(s)	51, 415
BsnI	GGCC	2 cut(s)	51, 415
Bsp143I	GATC	2 cut(s)	208, 289
BspACI	CCGC	5 cut(s)	125, 358, 392, 421, 487
BspANI	GGCC	2 cut(s)	51, 415
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	105, 198
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	208, 289
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	2 cut(s)	53, 213
Bst4CI	ACNGT	1 cut(s)	510
BstDEI	CTNAG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	501
BstKTI	GATC	2 cut(s)	211, 292
BstMBI	GATC	2 cut(s)	208, 289
BstNI	CCWGG	2 cut(s)	53, 213
BstNSI	RCATGY	3 cut(s)	178, 269, 370
BstSCI	CCNGG	2 cut(s)	51, 211
BstV2I	GAAGAC	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	51, 415
BtsCI	GGATG	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	121, 319
CviAII	CATG	5 cut(s)	129, 175, 266, 367, 398
CviQI	GTAC	2 cut(s)	121, 319
DdeI	CTNAG	1 cut(s)	5
DpnI	GATC	2 cut(s)	210, 291
DpnII	GATC	2 cut(s)	208, 289
Eco130I	CCWWGG	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	51, 211
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	5 cut(s)	132, 178, 269, 370, 401
FatI	CATG	5 cut(s)	128, 174, 265, 366, 397
FauI	CCCGC	2 cut(s)	132, 414
FauNDI	CATATG	2 cut(s)	78, 469
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	2 cut(s)	47, 146
GluI	GCNGC	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	51, 415
Hin1II	CATG	5 cut(s)	132, 178, 269, 370, 401
HphI	GGTGA	3 cut(s)	178, 299, 358
Hpy166II	GTNNAC	2 cut(s)	349, 433
Hpy188I	TCNGA	2 cut(s)	40, 294
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	2 cut(s)	349, 433
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4V	TGCA	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	132, 178, 269, 370, 401
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	208, 289
LmnI	GCTCC	2 cut(s)	339, 424
LpnPI	CCDG	9 cut(s)	38, 65, 86, 179, 198, 225, 272, 322, 459
MaeI	CTAG	2 cut(s)	47, 146
MaeIII	GTNAC	2 cut(s)	10, 360
MalI	GATC	2 cut(s)	210, 291
MboI	GATC	2 cut(s)	208, 289
MboII	GAAGA	3 cut(s)	121, 209, 323
MfeI	CAATTG	1 cut(s)	238
MluCI	AATT	3 cut(s)	238, 253, 491
MnlI	CCTC	6 cut(s)	22, 34, 174, 194, 292, 426
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	53, 213
MunI	CAATTG	1 cut(s)	238
MvaI	CCWGG	2 cut(s)	53, 213
NdeI	CATATG	2 cut(s)	78, 469
NdeII	GATC	2 cut(s)	208, 289
NlaIII	CATG	5 cut(s)	132, 178, 269, 370, 401
NspI	RCATGY	3 cut(s)	178, 269, 370
PceI	AGGCCT	1 cut(s)	51
PciI	ACATGT	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	393
PscI	ACATGT	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	51, 211
PspGI	CCWGG	2 cut(s)	51, 211
PspPI	GGNCC	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	2 cut(s)	122, 320
RsaNI	GTAC	2 cut(s)	121, 319
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	2 cut(s)	208, 289
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	53, 213
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	3 cut(s)	238, 253, 491
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	5 cut(s)	125, 358, 392, 421, 487
SspMI	CTAG	2 cut(s)	47, 146
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	51, 211
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	510
TasI	AATT	3 cut(s)	238, 253, 491
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	394
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TspDTI	ATGAA	3 cut(s)	122, 373, 414
XapI	RAATTY	1 cut(s)	491
XceI	RCATGY	3 cut(s)	178, 269, 370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XspI	CTAG	2 cut(s)	47, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.