Rroxscaffold_171G00441430

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000171
OG0018950
Physical Location & Seq
Forward (+)
65785 .. 67241
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_171G00441430.1

Sequence Viewer

Length: 624 bp
ATGTCGGCCACCTCTTTCCGGTGCTTCGCTTCGGGTTCCCTATGCTCGGCTTCCATTCCGACTTCTGCAAATTCATCGGAAGTAAATGAAGAATATAGCAGGGAAATGCTGAGAGTAACAGACAAGCTACTGGAGTTGCTTTCCGAGAGTCTAGGCCTGGACAAGAAGGAACTGAAATCCCATGTCGGAGGAGACAAAATAGAGCTGGAAATGAAGATAAACATGTACCCGCCATGCCCGCAGCCGCAACTGGCTCTCGGAGTTGAGCCTCACACAGACATGTCGGCCCTCACCTTGCTGGTTTCGAACGATGTTCCTGGTCTTCAGCTGTGGAAAGATGGCAACTGGGTTTCAGTAAATTACCTAACCAAGGCAGGCGCAATCTTCATTCACATTGGTGATCGGATGGAGGTGTTGAGCAATGGCAAGTACAAGAGTGTTCTTCACCGGAGCTTGGTGAACAAGGAACGGTTGCGCATGTCGTGGGCTGTGTTCGTTGCGCCGCCTCATGAGGCGGTCATTGGGCCTCTGCCGGAGCTTTTGGATGAACAAAACCCTGCCAAATACTCTACCAAAACATATGCTGAATACCGGCACCGCAAATTCAACAAGATCCCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01100 ko01110 map00941 map01100 map01110
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

207

Amino Acids

23.18

Weight (kDa)

7.01

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 71 - 168 1.9e-28 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 476
AccB1I GGYRCC 1 cut(s) 594
AciI CCGC 6 cut(s) 230, 239, 245, 503, 515, 598
AclWI GGATC 1 cut(s) 607
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 70, 602
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 2 cut(s) 227, 431
AfiI CCNNNNNNNGG 4 cut(s) 18, 46, 370, 454
AflIII ACRYGT 2 cut(s) 222, 279
AgsI TTSAA 1 cut(s) 607
AjnI CCWGG 2 cut(s) 156, 316
AleI CACNNNNGTG 1 cut(s) 396
AluBI AGCT 5 cut(s) 127, 205, 328, 453, 538
AluI AGCT 5 cut(s) 127, 205, 328, 453, 538
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 607
AoxI GGCC 4 cut(s) 6, 154, 285, 524
ApeKI GCWGC 1 cut(s) 241
ApoI RAATTY 2 cut(s) 70, 602
AspLEI GCGC 3 cut(s) 380, 477, 502
AspS9I GGNCC 2 cut(s) 286, 524
AsuHPI GGTGA 4 cut(s) 283, 410, 437, 469
AsuII TTCGAA 1 cut(s) 305
BanI GGYRCC 1 cut(s) 594
BbsI GAAGAC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 253
BccI CCATC 2 cut(s) 332, 400
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 2 cut(s) 158, 318
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 152
BisI GCNGC 3 cut(s) 242, 245, 503
BlsI GCNGC 3 cut(s) 243, 246, 504
Bme1390I CCNGG 2 cut(s) 158, 318
BmgT120I GGNCC 2 cut(s) 286, 524
BmiI GGNNCC 2 cut(s) 37, 596
BmrFI CCNGG 2 cut(s) 158, 318
BmrI ACTGGG 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 2 cut(s) 18, 447
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 46, 370, 454
Bse118I RCCGGY 1 cut(s) 591
Bse1I ACTGG 3 cut(s) 135, 255, 350
Bse3DI GCAATG 1 cut(s) 427
BseBI CCWGG 2 cut(s) 158, 318
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 2 cut(s) 411, 550
BseLI CCNNNNNNNGG 4 cut(s) 18, 46, 370, 454
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 3 cut(s) 135, 255, 350
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 253
BshFI GGCC 4 cut(s) 8, 156, 287, 526
BshNI GGYRCC 1 cut(s) 594
BsiSI CCGG 4 cut(s) 19, 448, 533, 592
BslI CCNNNNNNNGG 4 cut(s) 18, 46, 370, 454
BsmAI GTCTC 1 cut(s) 186
BsnI GGCC 4 cut(s) 8, 156, 287, 526
Bsp119I TTCGAA 1 cut(s) 305
Bsp143I GATC 2 cut(s) 400, 612
BspACI CCGC 6 cut(s) 230, 239, 245, 503, 515, 598
BspANI GGCC 4 cut(s) 8, 156, 287, 526
BspCNI CTCAG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 37, 596
BspPI GGATC 1 cut(s) 607
BspT104I TTCGAA 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 594
BsrDI GCAATG 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 591
BsrI ACTGG 3 cut(s) 135, 255, 350
BssAI RCCGGY 1 cut(s) 591
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 2 cut(s) 400, 612
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 158, 318
Bst4CI ACNGT 2 cut(s) 471, 621
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 239, 376
BstDEI CTNAG 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 368
BstF5I GGATG 2 cut(s) 411, 550
BstHHI GCGC 3 cut(s) 380, 477, 502
BstKTI GATC 2 cut(s) 403, 615
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 2 cut(s) 400, 612
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 2 cut(s) 158, 318
BstNSI RCATGY 3 cut(s) 226, 283, 481
BstSCI CCNGG 2 cut(s) 156, 316
BstV1I GCAGC 1 cut(s) 253
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 612
BstYI RGATCY 1 cut(s) 612
BsuRI GGCC 4 cut(s) 8, 156, 287, 526
BtsCI GGATG 2 cut(s) 411, 550
Cac8I GCNNGC 2 cut(s) 239, 376
CciI TCATGA 1 cut(s) 508
CfoI GCGC 3 cut(s) 380, 477, 502
Cfr10I RCCGGY 1 cut(s) 591
Cfr13I GGNCC 2 cut(s) 286, 524
Csp6I GTAC 2 cut(s) 226, 430
CviAII CATG 6 cut(s) 182, 223, 234, 280, 478, 509
CviQI GTAC 2 cut(s) 226, 430
DdeI CTNAG 1 cut(s) 110
DpnI GATC 2 cut(s) 402, 614
DpnII GATC 2 cut(s) 400, 612
EaeI YGGCCR 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 156, 316
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 6 cut(s) 185, 226, 237, 283, 481, 512
FatI CATG 6 cut(s) 181, 222, 233, 279, 477, 508
FauI CCCGC 2 cut(s) 237, 246
FauNDI CATATG 1 cut(s) 580
Fnu4HI GCNGC 3 cut(s) 242, 245, 503
FokI GGATG 2 cut(s) 418, 557
Fsp4HI GCNGC 3 cut(s) 242, 245, 503
FspBI CTAG 1 cut(s) 152
FspI TGCGCA 1 cut(s) 476
GlaI GCGC 3 cut(s) 379, 476, 501
GluI GCNGC 3 cut(s) 242, 245, 503
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 4 cut(s) 8, 156, 287, 526
HapII CCGG 4 cut(s) 19, 448, 533, 592
HhaI GCGC 3 cut(s) 380, 477, 502
Hin1II CATG 6 cut(s) 185, 226, 237, 283, 481, 512
Hin6I GCGC 3 cut(s) 378, 475, 500
HinP1I GCGC 3 cut(s) 378, 475, 500
HinfI GANTC 1 cut(s) 148
HpaII CCGG 4 cut(s) 19, 448, 533, 592
HphI GGTGA 4 cut(s) 283, 410, 437, 469
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 6 cut(s) 60, 79, 145, 188, 260, 405
Hpy188III TCNNGA 1 cut(s) 509
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 471, 621
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 6 cut(s) 185, 226, 237, 283, 481, 512
HspAI GCGC 3 cut(s) 378, 475, 500
Kzo9I GATC 2 cut(s) 400, 612
LmnI GCTCC 2 cut(s) 450, 535
Lsp1109I GCAGC 1 cut(s) 253
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 402, 614
MboI GATC 2 cut(s) 400, 612
MboII GAAGA 5 cut(s) 101, 226, 314, 376, 434
MflI RGATCY 1 cut(s) 612
MluCI AATT 3 cut(s) 70, 358, 602
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 2 cut(s) 83, 166
MnlI CCTC 8 cut(s) 22, 182, 279, 299, 403, 505, 516, 537
MslI CAYNNNNRTG 2 cut(s) 278, 396
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 4 cut(s) 19, 448, 533, 592
MspR9I CCNGG 2 cut(s) 158, 318
MvaI CCWGG 2 cut(s) 158, 318
MwoI GCNNNNNNNGC 1 cut(s) 238
NdeI CATATG 1 cut(s) 580
NdeII GATC 2 cut(s) 400, 612
NlaIII CATG 6 cut(s) 185, 226, 237, 283, 481, 512
NlaIV GGNNCC 2 cut(s) 37, 596
NmeAIII GCCGAG 1 cut(s) 26
NsbI TGCGCA 1 cut(s) 476
NspI RCATGY 3 cut(s) 226, 283, 481
NspV TTCGAA 1 cut(s) 305
OliI CACNNNNGTG 1 cut(s) 396
PagI TCATGA 1 cut(s) 508
PceI AGGCCT 1 cut(s) 156
PciI ACATGT 2 cut(s) 222, 279
PkrI GCNGC 3 cut(s) 243, 246, 504
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PscI ACATGT 2 cut(s) 222, 279
Psp6I CCWGG 2 cut(s) 156, 316
PspGI CCWGG 2 cut(s) 156, 316
PspN4I GGNNCC 2 cut(s) 37, 596
PspPI GGNCC 2 cut(s) 286, 524
PsuI RGATCY 1 cut(s) 612
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 2 cut(s) 227, 431
RsaNI GTAC 2 cut(s) 226, 430
RseI CAYNNNNRTG 2 cut(s) 278, 396
SatI GCNGC 3 cut(s) 242, 245, 503
Sau3AI GATC 2 cut(s) 400, 612
Sau96I GGNCC 2 cut(s) 286, 524
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 158, 318
SetI ASST 9 cut(s) 14, 129, 207, 296, 330, 366, 414, 455, 540
SfuI TTCGAA 1 cut(s) 305
SmiMI CAYNNNNRTG 2 cut(s) 278, 396
Sse9I AATT 3 cut(s) 70, 358, 602
SseBI AGGCCT 1 cut(s) 156
SsiI CCGC 6 cut(s) 230, 239, 245, 503, 515, 598
SspMI CTAG 1 cut(s) 152
StuI AGGCCT 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 156, 316
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 471, 621
TaqI TCGA 1 cut(s) 305
TasI AATT 3 cut(s) 70, 358, 602
TatI WGTACW 1 cut(s) 429
TauI GCSGC 2 cut(s) 247, 505
TseI GCWGC 1 cut(s) 241
TspDTI ATGAA 5 cut(s) 63, 102, 227, 376, 561
XagI CCTNNNNNAGG 1 cut(s) 368
XapI RAATTY 2 cut(s) 70, 602
XceI RCATGY 3 cut(s) 226, 283, 481
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.