Rmu_sc0000706.1_g000010

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000706.1
OG0018644
Physical Location & Seq
Forward (+)
39827 .. 41025
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
atgatcagtgtagtgccagctccaaaacccaaggatcaattccgccggaaaccgcctgaaagtgaagatcggaccaggttatccggggcggcaccgacggagcttaagggtgtgcttgataatgtccctgagattgtacaagtggttggtagtgaagtaccaaaccaagtgtttgataccacaaatgcagatggggaagataaagtcaagtctgttctgcgttcgatttttacccaactcatgtcagcgaccaaagagattgtaactacagcaacaactgaactgaaaaatcgtttacacatggaaaatcaggtgaggcagttgacagagaaggagcaactggtgttggaattggaaaggcaatatcctgatgatgtgggtgtcatatctgctttctttctcaactatgtcaagcttagtcctggagaagcactgtatctcggagcaaatgaaccccatgcctatatgtgcggtgactgcatcgagtgcatggcaacttctgacaatgtagtcagggccggcctcactcccaagcatcgggatgtgaaaaccctttgttctatgctcacatacaaacaaggctgccctgaaatcctgaaaggagttgccttaaattcttactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

207

Amino Acids

22.96

Weight (kDa)

5.5

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_hel PF20512 50 - 134 6.5e-14 Phosphomannose isomerase type I, helical insertion domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 91
AciI CCGC 4 cut(s) 43, 53, 89, 471
AclWI GGATC 1 cut(s) 42
AcsI RAATTY 1 cut(s) 613
AfaI GTAC 2 cut(s) 138, 159
AfiI CCNNNNNNNGG 1 cut(s) 537
AflII CTTAAG 1 cut(s) 104
AjnI CCWGG 2 cut(s) 74, 421
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 3 cut(s) 20, 103, 415
AluI AGCT 3 cut(s) 20, 103, 415
AlwI GGATC 1 cut(s) 42
AoxI GGCC 2 cut(s) 516, 520
ApeKI GCWGC 1 cut(s) 582
ApoI RAATTY 1 cut(s) 613
AspS9I GGNCC 2 cut(s) 72, 516
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 325, 485
AvaII GGWCC 1 cut(s) 72
BanI GGYRCC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 569
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 2 cut(s) 76, 423
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 85
BfaI CTAG 1 cut(s) 622
BfmI CTRYAG 1 cut(s) 267
BfrI CTTAAG 1 cut(s) 104
BisI GCNGC 2 cut(s) 90, 583
BlsI GCNGC 2 cut(s) 91, 584
Bme1390I CCNGG 3 cut(s) 76, 85, 423
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 72, 516
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 3 cut(s) 76, 85, 423
BmsI GCATC 2 cut(s) 489, 544
BpmI CTGGAG 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 30, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 537
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 1 cut(s) 345
BseBI CCWGG 2 cut(s) 76, 423
BseDI CCNNGG 2 cut(s) 30, 84
BseGI GGATG 1 cut(s) 547
BseLI CCNNNNNNNGG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 569
BshFI GGCC 2 cut(s) 518, 522
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 3 cut(s) 46, 84, 519
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 537
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 2 cut(s) 518, 522
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 3 cut(s) 3, 34, 67
BspACI CCGC 4 cut(s) 43, 53, 89, 471
BspANI GGCC 2 cut(s) 518, 522
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 518
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 345
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 2 cut(s) 30, 84
BssMI GATC 3 cut(s) 3, 34, 67
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 76, 423
Bst4CI ACNGT 1 cut(s) 435
BstAFI CTTAAG 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 486
BstAUI TGTACA 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 18, 520
BstDEI CTNAG 2 cut(s) 129, 416
BstF5I GGATG 1 cut(s) 547
BstKTI GATC 3 cut(s) 6, 37, 70
BstMBI GATC 3 cut(s) 3, 34, 67
BstMWI GCNNNNNNNGC 2 cut(s) 477, 486
BstNI CCWGG 2 cut(s) 76, 423
BstSCI CCNGG 3 cut(s) 74, 83, 421
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 569
BsuRI GGCC 2 cut(s) 518, 522
BtsCI GGATG 1 cut(s) 547
BtsIMutI CAGTG 2 cut(s) 13, 431
Cac8I GCNNGC 2 cut(s) 18, 520
Cfr10I RCCGGY 1 cut(s) 518
Cfr13I GGNCC 2 cut(s) 72, 516
CsiI ACCWGGT 1 cut(s) 74
Csp6I GTAC 2 cut(s) 137, 158
CviAII CATG 4 cut(s) 241, 301, 458, 490
CviJI RGCY 6 cut(s) 20, 103, 415, 518, 522, 582
CviKI_1 RGCY 6 cut(s) 20, 103, 415, 518, 522, 582
CviQI GTAC 2 cut(s) 137, 158
DdeI CTNAG 2 cut(s) 129, 416
DpnI GATC 3 cut(s) 5, 36, 69
DpnII GATC 3 cut(s) 3, 34, 67
DrdI GACNNNNNNGTC 1 cut(s) 509
DseDI GACNNNNNNGTC 1 cut(s) 509
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 74, 421
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 244, 304, 461, 493
FaqI GGGAC 1 cut(s) 110
FatI CATG 4 cut(s) 240, 300, 457, 489
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 90, 583
FokI GGATG 1 cut(s) 554
FseI GGCCGGCC 1 cut(s) 522
Fsp4HI GCNGC 2 cut(s) 90, 583
FspBI CTAG 1 cut(s) 622
GluI GCNGC 2 cut(s) 90, 583
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 2 cut(s) 518, 522
HapII CCGG 3 cut(s) 46, 84, 519
Hin1II CATG 4 cut(s) 244, 304, 461, 493
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HindIII AAGCTT 1 cut(s) 413
HpaII CCGG 3 cut(s) 46, 84, 519
HphI GGTGA 2 cut(s) 325, 485
Hpy166II GTNNAC 2 cut(s) 296, 324
Hpy188I TCNGA 3 cut(s) 72, 443, 502
Hpy188III TCNNGA 3 cut(s) 368, 539, 595
Hpy8I GTNNAC 2 cut(s) 296, 324
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4V TGCA 3 cut(s) 188, 480, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 477, 486
HpyF3I CTNAG 2 cut(s) 129, 416
Hsp92II CATG 4 cut(s) 244, 304, 461, 493
KroI GCCGGC 1 cut(s) 518
KroNI GCCGGC 1 cut(s) 520
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 34, 67
LmnI GCTCC 4 cut(s) 25, 100, 334, 443
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 2 cut(s) 489, 544
MabI ACCWGGT 1 cut(s) 74
MaeI CTAG 1 cut(s) 622
MaeIII GTNAC 2 cut(s) 262, 473
MalI GATC 3 cut(s) 5, 36, 69
MboI GATC 3 cut(s) 3, 34, 67
MboII GAAGA 2 cut(s) 77, 209
MluCI AATT 3 cut(s) 38, 350, 613
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 2 cut(s) 309, 533
MroNI GCCGGC 1 cut(s) 518
MseI TTAA 2 cut(s) 105, 611
MslI CAYNNNNRTG 1 cut(s) 540
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 3 cut(s) 46, 84, 519
MspR9I CCNGG 3 cut(s) 76, 85, 423
MvaI CCWGG 2 cut(s) 76, 423
MwoI GCNNNNNNNGC 2 cut(s) 477, 486
NaeI GCCGGC 1 cut(s) 520
NciI CCSGG 1 cut(s) 85
NdeII GATC 3 cut(s) 3, 34, 67
NgoMIV GCCGGC 1 cut(s) 518
NlaIII CATG 4 cut(s) 244, 304, 461, 493
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 473
PdiI GCCGGC 1 cut(s) 520
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 2 cut(s) 91, 584
Psp6I CCWGG 2 cut(s) 74, 421
PspGI CCWGG 2 cut(s) 74, 421
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 2 cut(s) 72, 516
RigI GGCCGGCC 1 cut(s) 522
RsaI GTAC 2 cut(s) 138, 159
RsaNI GTAC 2 cut(s) 137, 158
RseI CAYNNNNRTG 1 cut(s) 540
SaqAI TTAA 2 cut(s) 105, 611
SatI GCNGC 2 cut(s) 90, 583
Sau3AI GATC 3 cut(s) 3, 34, 67
Sau96I GGNCC 2 cut(s) 72, 516
ScrFI CCNGG 3 cut(s) 76, 85, 423
SetI ASST 5 cut(s) 22, 80, 105, 315, 417
SexAI ACCWGGT 1 cut(s) 74
SfaNI GCATC 2 cut(s) 489, 544
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 3 cut(s) 38, 350, 613
SsiI CCGC 4 cut(s) 43, 53, 89, 471
SspMI CTAG 1 cut(s) 622
StyD4I CCNGG 3 cut(s) 74, 83, 421
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 435
TaqI TCGA 2 cut(s) 224, 483
TasI AATT 3 cut(s) 38, 350, 613
TatI WGTACW 1 cut(s) 136
TauI GCSGC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 105, 611
Tru9I TTAA 2 cut(s) 105, 611
TscAI CASTG 2 cut(s) 13, 438
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 1 cut(s) 582
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 1 cut(s) 465
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 2 cut(s) 13, 438
Vha464I CTTAAG 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 1 cut(s) 613
XspI CTAG 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.