Rmu_sc0000745.1_g000011

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000745.1
OG0019510
Physical Location & Seq
Reverse (-)
29184 .. 29564
381 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
atggcccaaactggtcgcggcgttcacagcagctcctatccgcggtggctggcctattaccataaagaacacaatgcgactggtggcatttcttttctggagtattggctctgcaagttcatcttctgtatctctgccaataagcccactggtccttggactttcctggccacagtcctctacaacggccgccgcgtggggttaggacaaccagtgttgggtgccctctaccgtactctataccaggccaccatgcatcctttcgagactcacatttctggccctttttggatcattgatttctggattcaaacttactttccattcttccgccgcgacgatatttcattgctaccaccggctgatgccctttttggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

126

Amino Acids

14.53

Weight (kDa)

9.0

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 10 - 112 1.6e-11 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccII CGCG 4 cut(s) 18, 43, 195, 336
AciI CCGC 7 cut(s) 18, 41, 43, 190, 193, 331, 334
AclWI GGATC 1 cut(s) 299
AcoI YGGCCR 2 cut(s) 168, 187
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 3 cut(s) 42, 196, 218
AgsI TTSAA 1 cut(s) 311
AjnI CCWGG 2 cut(s) 165, 243
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 299
AoxI GGCC 6 cut(s) 3, 51, 168, 187, 246, 280
ApeKI GCWGC 1 cut(s) 30
AspS9I GGNCC 3 cut(s) 4, 152, 281
AvaII GGWCC 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 202
BciT130I CCWGG 2 cut(s) 167, 245
BcoDI GTCTC 1 cut(s) 260
BisI GCNGC 5 cut(s) 19, 31, 190, 193, 334
BlsI GCNGC 5 cut(s) 20, 32, 191, 194, 335
Bme1390I CCNGG 2 cut(s) 167, 245
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 3 cut(s) 4, 152, 281
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 2 cut(s) 167, 245
BmsI GCATC 2 cut(s) 265, 355
BpmI CTGGAG 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 41, 155
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 196, 218
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 4 cut(s) 16, 85, 154, 212
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 2 cut(s) 167, 245
BseDI CCNNGG 2 cut(s) 41, 155
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 3 cut(s) 42, 196, 218
BseMI GCAATG 1 cut(s) 347
BseNI ACTGG 4 cut(s) 16, 85, 154, 212
BseSI GKGCMC 1 cut(s) 226
BseX3I CGGCCG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 42
Bsh1236I CGCG 4 cut(s) 18, 43, 195, 336
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 6 cut(s) 5, 53, 170, 189, 248, 282
BshNI GGYRCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 359
BslI CCNNNNNNNGG 3 cut(s) 42, 196, 218
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 6 cut(s) 5, 53, 170, 189, 248, 282
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 7 cut(s) 18, 41, 43, 190, 193, 331, 334
BspANI GGCC 6 cut(s) 5, 53, 170, 189, 248, 282
BspFNI CGCG 4 cut(s) 18, 43, 195, 336
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 358
BsrI ACTGG 4 cut(s) 16, 85, 154, 212
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 41, 155
BssMI GATC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 167, 245
Bst4CI ACNGT 2 cut(s) 175, 233
BstC8I GCNNGC 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 4 cut(s) 18, 43, 195, 336
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 291
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 2 cut(s) 167, 245
BstSCI CCNGG 2 cut(s) 165, 243
BstSLI GKGCMC 1 cut(s) 226
BstUI CGCG 4 cut(s) 18, 43, 195, 336
BstV1I GCAGC 1 cut(s) 42
BstZI CGGCCG 1 cut(s) 187
BsuRI GGCC 6 cut(s) 5, 53, 170, 189, 248, 282
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 2 cut(s) 147, 219
Cac8I GCNNGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 3 cut(s) 4, 152, 281
Cfr42I CCGCGG 1 cut(s) 44
Csp6I GTAC 1 cut(s) 234
CviAII CATG 1 cut(s) 253
CviQI GTAC 1 cut(s) 234
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 2 cut(s) 168, 187
EagI CGGCCG 1 cut(s) 187
EciI GGCGGA 1 cut(s) 320
EclXI CGGCCG 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 152
Eco52I CGGCCG 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 165, 243
EcoT14I CCWWGG 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 1 cut(s) 256
FaiI YATR 3 cut(s) 63, 241, 254
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 1 cut(s) 252
Fnu4HI GCNGC 5 cut(s) 19, 31, 190, 193, 334
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 5 cut(s) 19, 31, 190, 193, 334
GluI GCNGC 5 cut(s) 19, 31, 190, 193, 334
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 6 cut(s) 5, 53, 170, 189, 248, 282
HapII CCGG 1 cut(s) 359
Hin1II CATG 1 cut(s) 256
HinfI GANTC 2 cut(s) 268, 307
HpaII CCGG 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 98, 265, 304
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 341
HpyCH4III ACNGT 2 cut(s) 175, 233
HpyCH4V TGCA 2 cut(s) 114, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 256
KspI CCGCGG 1 cut(s) 44
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 2 cut(s) 265, 355
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 2 cut(s) 115, 319
MhlI GDGCHC 1 cut(s) 226
MlsI TGGCCA 1 cut(s) 170
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 2 cut(s) 188, 236
Mox20I TGGCCA 1 cut(s) 170
Mph1103I ATGCAT 1 cut(s) 258
MscI TGGCCA 1 cut(s) 170
MseI TTAA 1 cut(s) 379
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 2 cut(s) 167, 245
MvaI CCWGG 2 cut(s) 167, 245
MvnI CGCG 4 cut(s) 18, 43, 195, 336
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeII GATC 1 cut(s) 291
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 5 cut(s) 20, 32, 191, 194, 335
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 165, 243
PspGI CCWGG 2 cut(s) 165, 243
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 3 cut(s) 4, 152, 281
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SacII CCGCGG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 379
SatI GCNGC 5 cut(s) 19, 31, 190, 193, 334
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 3 cut(s) 4, 152, 281
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 2 cut(s) 167, 245
SduI GDGCHC 1 cut(s) 226
SetI ASST 1 cut(s) 35
SfaNI GCATC 2 cut(s) 265, 355
Sfr303I CCGCGG 1 cut(s) 44
SgrBI CCGCGG 1 cut(s) 44
SinI GGWCC 1 cut(s) 152
SsiI CCGC 7 cut(s) 18, 41, 43, 190, 193, 331, 334
StyD4I CCNGG 2 cut(s) 165, 243
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 175, 233
TaqI TCGA 1 cut(s) 264
TauI GCSGC 4 cut(s) 21, 192, 195, 336
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TscAI CASTG 2 cut(s) 154, 219
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 109, 336
TspRI CASTG 2 cut(s) 154, 219
VpaK11BI GGWCC 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.