Rmu_sc0000758.1_g000010

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000758.1
OG0017849
Physical Location & Seq
Reverse (-)
41490 .. 47088
5599 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 714 bp
atgaagaagatcagcccatccccgacaccattggtggtggtcggcggcggctctgcaactaattccggcggccatttcaggccacctccggggaccttaagggcagtttctgcccatttttatgttctacatgttaagacgataatttcgatatattatacgaaatttttggatatcgtaatggaagggacatctaagactcctaattccactcccatacctactccaactaatagttctagcattggaacaacttcgacacccacaaccactcctactcagacggtggaccaaagtcatcaacaaggagctgcagcactgccaccccttccatcaatttcagaagatgttgatggaacaaccaggtttagtagtaggaagaacaagtcaaaaacttgggagcactttgagaaggtgaagaattcggatggggcattgaaggtaacagctcgatctaaatgcaggtattgcccccaaacatatgcatgcgactccatatcacatgagaccacttcaatgaggaaccacatgttgttccagtgccagaagtgtcctctgttcatccccaacaaaaaacaaaggtacctcacttttgaatttggggaaaaggcagggaatcttgttgctgtggattttgatgacactgtctctaggttagcttgtgcaaaaatggtaatgatggatgaacttgctttcagtttcgttgagggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

237

Amino Acids

25.92

Weight (kDa)

9.11

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017849)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014725
rosa_multiflora Rmu_sc0000758.1_g000010
rosa_roxburghii Rroxscaffold_7G00198470
rosa_samantha Rh2BG514900 Rh2DG274300 Rh2DG527000 Rh3AG123000 Rh4DG205600 Rh5CG206500 Rh6CG096500 Rh7AG301400
rosa_wichuraiana Rw6G023390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 453
Acc65I GGTACC 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 582
AciI CCGC 3 cut(s) 45, 48, 69
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 3 cut(s) 164, 421, 596
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 1 cut(s) 89
AflII CTTAAG 1 cut(s) 97
AflIII ACRYGT 2 cut(s) 130, 528
AgsI TTSAA 3 cut(s) 439, 516, 596
AjnI CCWGG 1 cut(s) 362
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
AluBI AGCT 3 cut(s) 311, 449, 659
AluI AGCT 3 cut(s) 311, 449, 659
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 2 cut(s) 500, 652
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 2 cut(s) 70, 80
ApeKI GCWGC 2 cut(s) 311, 314
ApoI RAATTY 3 cut(s) 164, 421, 596
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
Asp700I GAANNNNTTC 1 cut(s) 253
Asp718I GGTACC 1 cut(s) 582
AspS9I GGNCC 2 cut(s) 93, 289
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 427
AvaII GGWCC 2 cut(s) 93, 289
BaeI ACNNNNGTAYC 2 cut(s) 566, 599
BanI GGYRCC 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 298, 326
BccI CCATC 5 cut(s) 25, 340, 347, 422, 673
BcgI CGANNNNNNTGC 2 cut(s) 441, 475
BciT130I CCWGG 1 cut(s) 364
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 500, 652
BfaI CTAG 2 cut(s) 240, 651
BfmI CTRYAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 453
BisI GCNGC 5 cut(s) 46, 49, 70, 312, 315
BlsI GCNGC 5 cut(s) 47, 50, 71, 313, 316
Bme1390I CCNGG 2 cut(s) 90, 364
Bme18I GGWCC 2 cut(s) 93, 289
BmgT120I GGNCC 2 cut(s) 93, 289
BmiI GGNNCC 3 cut(s) 94, 524, 584
BmrFI CCNGG 2 cut(s) 90, 364
BoxI GACNNNNGTC 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 538
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 4 cut(s) 17, 433, 561, 688
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 538
BseXI GCAGC 2 cut(s) 298, 326
BshFI GGCC 2 cut(s) 72, 82
BshNI GGYRCC 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 2 cut(s) 66, 89
BslFI GGGAC 2 cut(s) 106, 202
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 500, 652
BsmFI GGGAC 2 cut(s) 106, 202
BsnI GGCC 2 cut(s) 72, 82
Bso31I GGTCTC 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 2 cut(s) 9, 452
BspACI CCGC 3 cut(s) 45, 48, 69
BspANI GGCC 2 cut(s) 72, 82
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 3 cut(s) 94, 524, 584
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 582
BspTI CTTAAG 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 500
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 2 cut(s) 9, 452
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 286, 646
BstAFI CTTAAG 1 cut(s) 97
BstAPI GCANNNNNTGC 2 cut(s) 110, 468
BstC8I GCNNGC 1 cut(s) 487
BstDEI CTNAG 2 cut(s) 195, 279
BstF5I GGATG 4 cut(s) 17, 433, 561, 688
BstKTI GATC 2 cut(s) 12, 455
BstMAI GTCTC 2 cut(s) 500, 652
BstMBI GATC 2 cut(s) 9, 452
BstMWI GCNNNNNNNGC 2 cut(s) 110, 468
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 3 cut(s) 134, 489, 532
BstPAI GACNNNNGTC 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 88, 362
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 298, 326
BsuRI GGCC 2 cut(s) 72, 82
BtsCI GGATG 4 cut(s) 17, 433, 561, 688
BtsI GCAGTG 1 cut(s) 317
BtsIMutI CAGTG 3 cut(s) 317, 545, 642
BveI ACCTGC 1 cut(s) 453
Cac8I GCNNGC 1 cut(s) 487
CaiI CAGNNNCTG 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 93, 289
CsiI ACCWGGT 1 cut(s) 362
Csp6I GTAC 1 cut(s) 583
CviAII CATG 4 cut(s) 131, 486, 503, 529
CviJI RGCY 7 cut(s) 15, 51, 72, 82, 311, 449, 659
CviKI_1 RGCY 7 cut(s) 15, 51, 72, 82, 311, 449, 659
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 2 cut(s) 195, 279
DpnI GATC 2 cut(s) 11, 454
DpnII GATC 2 cut(s) 9, 452
EaeI YGGCCR 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 500
Eco32I GATATC 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 93, 289
EcoO109I RGGNCCY 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 362
EcoRV GATATC 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 487
FaeI CATG 4 cut(s) 134, 489, 506, 532
FaqI GGGAC 2 cut(s) 106, 202
FatI CATG 4 cut(s) 130, 485, 502, 528
FauNDI CATATG 1 cut(s) 481
Fnu4HI GCNGC 5 cut(s) 46, 49, 70, 312, 315
FokI GGATG 4 cut(s) 4, 440, 548, 695
Fsp4HI GCNGC 5 cut(s) 46, 49, 70, 312, 315
FspBI CTAG 2 cut(s) 240, 651
GluI GCNGC 5 cut(s) 46, 49, 70, 312, 315
HaeIII GGCC 2 cut(s) 72, 82
HapII CCGG 2 cut(s) 66, 89
Hin1II CATG 4 cut(s) 134, 489, 506, 532
HinfI GANTC 3 cut(s) 199, 491, 616
HpaII CCGG 2 cut(s) 66, 89
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 282, 343, 427
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 4 cut(s) 179, 338, 406, 433
HpyCH4III ACNGT 2 cut(s) 286, 646
HpyCH4V TGCA 5 cut(s) 56, 314, 462, 485, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 468
HpyF3I CTNAG 2 cut(s) 195, 279
Hsp92II CATG 4 cut(s) 134, 489, 506, 532
KpnI GGTACC 1 cut(s) 586
Kzo9I GATC 2 cut(s) 9, 452
LmnI GCTCC 2 cut(s) 308, 400
LpnPI CCDG 9 cut(s) 64, 79, 102, 349, 376, 448, 551, 557, 597
Lsp1109I GCAGC 2 cut(s) 298, 326
MabI ACCWGGT 1 cut(s) 362
MaeI CTAG 2 cut(s) 240, 651
MaeIII GTNAC 1 cut(s) 442
MalI GATC 2 cut(s) 11, 454
MboI GATC 2 cut(s) 9, 452
MboII GAAGA 5 cut(s) 16, 19, 356, 391, 430
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 7 cut(s) 61, 144, 164, 205, 336, 421, 596
MlyI GAGTC 2 cut(s) 193, 485
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 5 cut(s) 96, 513, 564, 596, 700
Mph1103I ATGCAT 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 2 cut(s) 98, 135
MslI CAYNNNNRTG 3 cut(s) 120, 484, 515
MspCI CTTAAG 1 cut(s) 97
MspI CCGG 2 cut(s) 66, 89
MspR9I CCNGG 2 cut(s) 90, 364
MvaI CCWGG 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 110, 468
NciI CCSGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 481
NdeII GATC 2 cut(s) 9, 452
NlaIII CATG 4 cut(s) 134, 489, 506, 532
NlaIV GGNNCC 3 cut(s) 94, 524, 584
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 3 cut(s) 134, 489, 532
PaeI GCATGC 1 cut(s) 489
PciI ACATGT 2 cut(s) 130, 528
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 616
PflFI GACNNNGTC 1 cut(s) 644
PkrI GCNGC 5 cut(s) 47, 50, 71, 313, 316
PleI GAGTC 2 cut(s) 193, 485
PpsI GAGTC 2 cut(s) 193, 485
PpuMI RGGWCCY 1 cut(s) 93
PscI ACATGT 2 cut(s) 130, 528
PshAI GACNNNNGTC 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 3 cut(s) 94, 524, 584
PspPI GGNCC 2 cut(s) 93, 289
PspPPI RGGWCCY 1 cut(s) 93
PstI CTGCAG 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 644
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
RseI CAYNNNNRTG 3 cut(s) 120, 484, 515
SaqAI TTAA 2 cut(s) 98, 135
SatI GCNGC 5 cut(s) 46, 49, 70, 312, 315
Sau3AI GATC 2 cut(s) 9, 452
Sau96I GGNCC 2 cut(s) 93, 289
SchI GAGTC 2 cut(s) 193, 485
ScrFI CCNGG 2 cut(s) 90, 364
SduI GDGCHC 1 cut(s) 405
SexAI ACCWGGT 1 cut(s) 362
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 2 cut(s) 93, 289
SmiMI CAYNNNNRTG 3 cut(s) 120, 484, 515
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
SphI GCATGC 1 cut(s) 489
Sse9I AATT 7 cut(s) 61, 144, 164, 205, 336, 421, 596
SsiI CCGC 3 cut(s) 45, 48, 69
SspMI CTAG 2 cut(s) 240, 651
StyD4I CCNGG 2 cut(s) 88, 362
TaaI ACNGT 2 cut(s) 286, 646
TaqI TCGA 3 cut(s) 149, 257, 451
TasI AATT 7 cut(s) 61, 144, 164, 205, 336, 421, 596
TauI GCSGC 3 cut(s) 48, 51, 72
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 2 cut(s) 98, 135
Tru9I TTAA 2 cut(s) 98, 135
TscAI CASTG 3 cut(s) 324, 545, 649
TseI GCWGC 2 cut(s) 311, 314
TspDTI ATGAA 3 cut(s) 17, 550, 699
TspRI CASTG 3 cut(s) 324, 545, 649
Tth111I GACNNNGTC 1 cut(s) 644
Vha464I CTTAAG 1 cut(s) 97
VpaK11BI GGWCC 2 cut(s) 93, 289
XapI RAATTY 3 cut(s) 164, 421, 596
XceI RCATGY 3 cut(s) 134, 489, 532
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 2 cut(s) 240, 651
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.