Rh3AG123000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017849
Physical Location & Seq
Forward (+)
10617803 .. 10632173
14371 bp
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UTR
Exon/CDS
Intron
Rh3AG123000.1

Sequence Viewer

Length: 465 bp
ATGAGTCGTTCCAGTACTAATTTTGTTAGGACTGCCATATTCAATCTAAACACAAGGGCCATTAAAAAGGAACACGTACTCCTTTTTGCTAGGTTGAGGAGGAAACTGCTATGCGTATGTATAATGCTGCAAAGAATAGGCAAGGCCGGAGTTCATTCCATTGGAAAATTTTGGCTGCTCAAAGGCTCAAAGCCTCAGATAATGGAAGGGACCTCAGAGACTCCTAATTTTACAGTAACTACTTCGACTGGTGATTCCAGCATTGGAACCACTCCGACACCCACTCCTCCTAATCAGACGGTTAATCAACCCCTTCCACCCCTTCCACCCCAGGGTGCAGAAGAGCCTGAAGGAGCAAACTGGTATCTTCATCTTGTAATTGTTCATGAGCTTGTACTATCAGATTTCCGCGCTGAGAGAAGTAGTTATCGTTTGCTAAAAATGAAAACAAGGAAGCTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.28

Weight (kDa)

10.14

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017849)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014725
rosa_multiflora Rmu_sc0000758.1_g000010
rosa_roxburghii Rroxscaffold_7G00198470
rosa_samantha Rh2BG514900 Rh2DG274300 Rh2DG527000 Rh3AG123000 Rh4DG205600 Rh5CG206500 Rh6CG096500 Rh7AG301400
rosa_wichuraiana Rw6G023390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 411
AciI CCGC 1 cut(s) 409
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 3 cut(s) 16, 78, 396
AfiI CCNNNNNNNGG 1 cut(s) 332
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 1 cut(s) 330
AloI GAACNNNNNNTCC 2 cut(s) 63, 95
AluBI AGCT 2 cut(s) 391, 457
AluI AGCT 2 cut(s) 391, 457
Alw26I GTCTC 1 cut(s) 212
AoxI GGCC 2 cut(s) 57, 144
ApeKI GCWGC 2 cut(s) 127, 175
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 2 cut(s) 57, 210
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 114, 162
BciT130I CCWGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 2 cut(s) 90, 458
BisI GCNGC 2 cut(s) 128, 176
BlsI GCNGC 2 cut(s) 129, 177
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 57, 210
BmiI GGNNCC 2 cut(s) 211, 268
BmrFI CCNGG 1 cut(s) 332
BsaAI YACGTR 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 330, 331
BsaXI ACNNNNNCTCC 4 cut(s) 63, 93, 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse1I ACTGG 3 cut(s) 12, 253, 365
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 330, 331
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 3 cut(s) 209, 228, 405
BseNI ACTGG 3 cut(s) 12, 253, 365
BseRI GAGGAG 2 cut(s) 112, 276
BseXI GCAGC 2 cut(s) 114, 162
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 411
BshFI GGCC 2 cut(s) 59, 146
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 2 cut(s) 59, 146
BspACI CCGC 1 cut(s) 409
BspANI GGCC 2 cut(s) 59, 146
BspCNI CTCAG 3 cut(s) 208, 227, 406
BspFNI CGCG 1 cut(s) 411
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 2 cut(s) 211, 268
BspQI GCTCTTC 1 cut(s) 336
BsrI ACTGG 3 cut(s) 12, 253, 365
BssECI CCNNGG 2 cut(s) 330, 331
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 235, 301
Bst6I CTCTTC 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 76
BstDEI CTNAG 3 cut(s) 195, 214, 414
BstFNI CGCG 1 cut(s) 411
BstHHI GCGC 1 cut(s) 413
BstMAI GTCTC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 330
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 114, 162
BsuRI GGCC 2 cut(s) 59, 146
CciI TCATGA 1 cut(s) 385
CfoI GCGC 1 cut(s) 413
Cfr13I GGNCC 2 cut(s) 57, 210
Csp6I GTAC 3 cut(s) 15, 77, 395
CviAII CATG 1 cut(s) 386
CviJI RGCY 8 cut(s) 59, 146, 175, 186, 193, 346, 391, 457
CviKI_1 RGCY 8 cut(s) 59, 146, 175, 186, 193, 346, 391, 457
CviQI GTAC 3 cut(s) 15, 77, 395
DdeI CTNAG 3 cut(s) 195, 214, 414
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 330
FaeI CATG 1 cut(s) 389
FaiI YATR 5 cut(s) 38, 112, 118, 122, 387
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 128, 176
Fsp4HI GCNGC 2 cut(s) 128, 176
FspBI CTAG 2 cut(s) 90, 458
GlaI GCGC 1 cut(s) 412
GluI GCNGC 2 cut(s) 128, 176
HaeIII GGCC 2 cut(s) 59, 146
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 413
Hin1II CATG 1 cut(s) 389
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HinfI GANTC 3 cut(s) 4, 220, 254
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 5 cut(s) 198, 217, 276, 297, 403
Hpy188III TCNNGA 1 cut(s) 386
HpyAV CCTTC 4 cut(s) 200, 323, 332, 344
HpyCH4III ACNGT 2 cut(s) 235, 301
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 130, 338
HpyF3I CTNAG 3 cut(s) 195, 214, 414
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 1 cut(s) 389
HspAI GCGC 1 cut(s) 411
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 8 cut(s) 25, 160, 234, 271, 317, 344, 346, 360
Lsp1109I GCAGC 2 cut(s) 114, 162
MaeI CTAG 2 cut(s) 90, 458
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 235
MboII GAAGA 2 cut(s) 353, 359
MluCI AATT 4 cut(s) 19, 167, 226, 378
MlyI GAGTC 2 cut(s) 13, 214
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 5 cut(s) 90, 93, 204, 223, 297
MseI TTAA 2 cut(s) 63, 303
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 1 cut(s) 411
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 2 cut(s) 211, 268
PagI TCATGA 1 cut(s) 385
PasI CCCWGGG 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 129, 177
PleI GAGTC 2 cut(s) 12, 214
PpsI GAGTC 2 cut(s) 12, 214
Ppu21I YACGTR 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 2 cut(s) 211, 268
PspPI GGNCC 2 cut(s) 57, 210
PspPPI RGGWCCY 1 cut(s) 210
RsaI GTAC 3 cut(s) 16, 78, 396
RsaNI GTAC 3 cut(s) 15, 77, 395
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 63, 303
SatI GCNGC 2 cut(s) 128, 176
Sau96I GGNCC 2 cut(s) 57, 210
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 2 cut(s) 13, 214
ScrFI CCNGG 1 cut(s) 332
SetI ASST 5 cut(s) 78, 95, 215, 393, 459
SinI GGWCC 1 cut(s) 210
Sse9I AATT 4 cut(s) 19, 167, 226, 378
SsiI CCGC 1 cut(s) 409
SspMI CTAG 2 cut(s) 90, 458
StyD4I CCNGG 1 cut(s) 330
TaaI ACNGT 2 cut(s) 235, 301
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 245
TasI AATT 4 cut(s) 19, 167, 226, 378
TatI WGTACW 2 cut(s) 14, 394
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 2 cut(s) 63, 303
Tru9I TTAA 2 cut(s) 63, 303
TseI GCWGC 2 cut(s) 127, 175
TspDTI ATGAA 4 cut(s) 143, 359, 374, 458
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 1 cut(s) 167
XspI CTAG 2 cut(s) 90, 458
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.