Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017849

Physical Location & Seq

Genomic Coordinates Reverse (-)

10662674 .. 10667503

Gene Structure 4830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG096500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAAGGGACATCTGAGACTCCTAATTCCACTCCCATACCTACTCCAACTAATGGTTCTAGCATTGGAACAACTCCGACACCCACAGCCACTCCTACTCAAATGATGGACCAAAGTCATCAACAAGGAGCTACAACACTGCCACCCCTTCCACCAGTTTCAGAAGATCCTGATGGAACAACCAGGCCCCTCCCGGTGACTCATCGAGCAATTCCTCCTGGCAATTTCTTCACCCTACTGGCACCACCTAGCCTGGCAACTCCGGCAATTAGGCTCTGGGTGACTCAATTGGCGTTGGTCGCTGGCAATATCTTCAACTCTCGGTGTCAGACTTGGGTTGTTCCTTATTTATATTGGTCTCCGATACCACCTACCCTCACCAGTACTACCAGCTGCCCTTATCTGCTCTGTCTCGGTCTCGCTGACCCGTCTTGCAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.57

Weight (kDa)

4.96

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017849)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014725
rosa_multiflora	Rmu_sc0000758.1_g000010
rosa_roxburghii	Rroxscaffold_7G00198470
rosa_samantha	Rh2BG514900 Rh2DG274300 Rh2DG527000 Rh3AG123000 Rh4DG205600 Rh5CG206500 Rh6CG096500 Rh7AG301400
rosa_wichuraiana	Rw6G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	53
AclWI	GGATC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	3 cut(s)	182, 217, 252
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	2 cut(s)	131, 393
AluI	AGCT	2 cut(s)	131, 393
Alw26I	GTCTC	4 cut(s)	11, 363, 416, 422
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	393, 435
AspS9I	GGNCC	2 cut(s)	109, 186
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	4 cut(s)	208, 223, 292, 370
AvaII	GGWCC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	2 cut(s)	100, 167
BciT130I	CCWGG	3 cut(s)	184, 219, 254
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	4 cut(s)	11, 363, 416, 422
BfaI	CTAG	2 cut(s)	60, 249
BisI	GCNGC	2 cut(s)	394, 436
BlsI	GCNGC	2 cut(s)	395, 437
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	4 cut(s)	184, 194, 219, 254
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	109, 186
BmiI	GGNNCC	2 cut(s)	188, 243
BmrFI	CCNGG	4 cut(s)	184, 194, 219, 254
BoxI	GACNNNNGTC	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	194
BsaI	GGTCTC	2 cut(s)	363, 422
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	3 cut(s)	155, 243, 381
BseBI	CCWGG	3 cut(s)	184, 219, 254
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	3 cut(s)	155, 243, 381
BseXI	GCAGC	1 cut(s)	380
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	194, 263
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	4 cut(s)	11, 363, 416, 422
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	187
Bso31I	GGTCTC	2 cut(s)	363, 422
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	188, 243
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	241
BspTNI	GGTCTC	2 cut(s)	363, 422
BsrI	ACTGG	3 cut(s)	155, 243, 381
BssMI	GATC	1 cut(s)	166
Bst2UI	CCWGG	3 cut(s)	184, 219, 254
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	15
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	4 cut(s)	11, 363, 416, 422
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 299
BstNI	CCWGG	3 cut(s)	184, 219, 254
BstPAI	GACNNNNGTC	1 cut(s)	114
BstSCI	CCNGG	4 cut(s)	182, 192, 217, 252
BstV1I	GCAGC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	109, 186
Csp6I	GTAC	1 cut(s)	384
CviJI	RGCY	6 cut(s)	89, 131, 187, 252, 274, 393
CviKI_1	RGCY	6 cut(s)	89, 131, 187, 252, 274, 393
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eco31I	GGTCTC	2 cut(s)	363, 422
Eco47I	GGWCC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	186
EcoRII	CCWGG	3 cut(s)	182, 217, 252
FaiI	YATR	2 cut(s)	38, 352
FaqI	GGGAC	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	394, 436
Fsp4HI	GCNGC	2 cut(s)	394, 436
FspBI	CTAG	2 cut(s)	60, 249
GluI	GCNGC	2 cut(s)	394, 436
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	2 cut(s)	194, 263
HinfI	GANTC	3 cut(s)	19, 199, 283
HpaII	CCGG	2 cut(s)	194, 263
HphI	GGTGA	4 cut(s)	208, 223, 292, 370
Hpy188I	TCNGA	5 cut(s)	16, 78, 163, 330, 363
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 299
HpyF3I	CTNAG	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	1 cut(s)	380
MaeI	CTAG	2 cut(s)	60, 249
MaeIII	GTNAC	2 cut(s)	196, 280
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	176, 220, 304
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	5 cut(s)	25, 210, 223, 267, 287
MlyI	GAGTC	3 cut(s)	13, 193, 277
MmeI	TCCRAC	2 cut(s)	71, 101
MnlI	CCTC	3 cut(s)	200, 225, 386
MspA1I	CMGCKG	1 cut(s)	393
MspI	CCGG	2 cut(s)	194, 263
MspR9I	CCNGG	4 cut(s)	184, 194, 219, 254
MunI	CAATTG	1 cut(s)	287
MvaI	CCWGG	3 cut(s)	184, 219, 254
MwoI	GCNNNNNNNGC	2 cut(s)	263, 299
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	1 cut(s)	166
NlaIV	GGNNCC	2 cut(s)	188, 243
NmuCI	GTSAC	2 cut(s)	196, 280
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	395, 437
PleI	GAGTC	3 cut(s)	13, 193, 277
PpsI	GAGTC	3 cut(s)	13, 193, 277
PshAI	GACNNNNGTC	1 cut(s)	114
Psp6I	CCWGG	3 cut(s)	182, 217, 252
PspGI	CCWGG	3 cut(s)	182, 217, 252
PspN4I	GGNNCC	2 cut(s)	188, 243
PspPI	GGNCC	2 cut(s)	109, 186
PsuI	RGATCY	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	393
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
SatI	GCNGC	2 cut(s)	394, 436
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	109, 186
ScaI	AGTACT	1 cut(s)	385
SchI	GAGTC	3 cut(s)	13, 193, 277
ScrFI	CCNGG	4 cut(s)	184, 194, 219, 254
SetI	ASST	5 cut(s)	43, 133, 250, 373, 395
SinI	GGWCC	1 cut(s)	109
Sse9I	AATT	5 cut(s)	25, 210, 223, 267, 287
SspMI	CTAG	2 cut(s)	60, 249
StyD4I	CCNGG	4 cut(s)	182, 192, 217, 252
TaqI	TCGA	1 cut(s)	205
TaqII	GACCGA	1 cut(s)	404
TasI	AATT	5 cut(s)	25, 210, 223, 267, 287
TatI	WGTACW	1 cut(s)	383
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	2 cut(s)	196, 280
TseI	GCWGC	2 cut(s)	393, 435
Tsp45I	GTSAC	2 cut(s)	196, 280
TspRI	CASTG	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	109
XspI	CTAG	2 cut(s)	60, 249
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.