Rh5CG206500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017849
Physical Location & Seq
Forward (+)
20830599 .. 20833503
2905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG206500.1

Sequence Viewer

Length: 396 bp
ATGGAAGGGACATCTGAGACTCCTAATTCCACTCTCATACCTACTCCAACTAATGGTTCTAGCATTGAAATAACTCCGACACCCACATCCACTCCTACTCAGACGGTAGACCAAAGTCATCAACAAGGAACTGCAGCACTGCCACCCCTTCCACCAGTTTCAGAAGATCCTGATGGAACAACCAGGTTTAGTAGTATGAAGAACAAGTCAAAAGCTTGGGAGCACTTTGAGAGGGTGAAGAATCCAGATGGGACATTGAAACTCAAATTCTGGAATGGCAAGTCAACCGTCTCTGTCATCTCCACTGTCCTCTGCTTCCAACTTCGACCACTCCCCCACTCAACCCACCTCGACCCGACCCACCAAAAATGCGAGCCTCTCTTGCCCCGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.33

Weight (kDa)

6.96

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017849)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014725
rosa_multiflora Rmu_sc0000758.1_g000010
rosa_roxburghii Rroxscaffold_7G00198470
rosa_samantha Rh2BG514900 Rh2DG274300 Rh2DG527000 Rh3AG123000 Rh4DG205600 Rh5CG206500 Rh6CG096500 Rh7AG301400
rosa_wichuraiana Rw6G023390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 53
AccI GTMKAC 1 cut(s) 108
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 2 cut(s) 68, 259
AjnI CCWGG 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 2 cut(s) 11, 295
AlwI GGATC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 167, 242
BciT130I CCWGG 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 11, 295
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 184
BoxI GACNNNNGTC 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 2 cut(s) 6, 113
BseNI ACTGG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 225
BslFI GGGAC 2 cut(s) 22, 265
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 11, 295
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 2 cut(s) 22, 265
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 166, 389
BspCNI CTCAG 2 cut(s) 7, 112
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 161
BsrI ACTGG 1 cut(s) 155
BssMI GATC 2 cut(s) 166, 389
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 106, 289, 307
BstC8I GCNNGC 1 cut(s) 374
BstDEI CTNAG 3 cut(s) 15, 99, 393
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 2 cut(s) 169, 392
BstMAI GTCTC 2 cut(s) 11, 295
BstMBI GATC 2 cut(s) 166, 389
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstNI CCWGG 1 cut(s) 184
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 137, 303
Cac8I GCNNGC 1 cut(s) 374
CsiI ACCWGGT 1 cut(s) 182
CviJI RGCY 2 cut(s) 215, 376
CviKI_1 RGCY 2 cut(s) 215, 376
DdeI CTNAG 3 cut(s) 15, 99, 393
DpnI GATC 2 cut(s) 168, 391
DpnII GATC 2 cut(s) 166, 389
EcoRII CCWGG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 295
FaiI YATR 2 cut(s) 38, 197
FaqI GGGAC 2 cut(s) 22, 265
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 2 cut(s) 19, 241
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 109, 285
Hpy188I TCNGA 4 cut(s) 16, 78, 102, 163
Hpy188III TCNNGA 3 cut(s) 170, 245, 271
Hpy8I GTNNAC 2 cut(s) 109, 285
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 106, 289, 307
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 3 cut(s) 15, 99, 393
Kzo9I GATC 2 cut(s) 166, 389
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 6 cut(s) 168, 169, 183, 196, 256, 258
Lsp1109I GCAGC 1 cut(s) 146
MabI ACCWGGT 1 cut(s) 182
MaeI CTAG 1 cut(s) 60
MalI GATC 2 cut(s) 168, 391
MboI GATC 2 cut(s) 166, 389
MboII GAAGA 3 cut(s) 176, 211, 250
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 2 cut(s) 25, 266
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 3 cut(s) 71, 101, 343
MnlI CCTC 4 cut(s) 225, 320, 359, 387
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 382
NdeII GATC 2 cut(s) 166, 389
PfeI GAWTC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PshAI GACNNNNGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 166
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 166, 389
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 1 cut(s) 225
SetI ASST 4 cut(s) 43, 188, 217, 351
SexAI ACCWGGT 1 cut(s) 182
SfcI CTRYAG 1 cut(s) 132
Sse9I AATT 2 cut(s) 25, 266
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 3 cut(s) 106, 289, 307
TaqI TCGA 2 cut(s) 325, 351
TasI AATT 2 cut(s) 25, 266
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 2 cut(s) 144, 310
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 212
TspRI CASTG 2 cut(s) 144, 310
Van91I CCANNNNNTGG 1 cut(s) 53
XapI RAATTY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.