Rw6G023390

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
45825503 .. 45827904
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023390.1

Sequence Viewer

Length: 309 bp
ATGGTTTTAGATTTATTGGTTATGGAAGGGACATCTGAGACTCCCAAATCCACTCCCATGCATACTCCAACTAATGGTTCCAGCACTGGAACCACTCCAACACCCACACCCACTCCTACTCAGATGGTGGATCATGGTCATCAACAAGGAGCTGCAGCACTGCCTTGTTGCTCCGCTACAGATTTTTGGATTACTTCGGCAAATTGGACAGGGAGAACTGCTGTCACTCAACCATTGAAGATGATGGGCTCCCAGAATACCTTGGTGATGGAGTTAGTTAGGCATAAATTAGTGATTTTGTTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.97

Weight (kDa)

6.38

Isoelectric Point (pI)

16.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017849)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 74
AciI CCGC 1 cut(s) 174
AclWI GGATC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 1 cut(s) 238
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 152, 155
AsuHPI GGTGA 1 cut(s) 277
BanII GRGCYC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 139, 167
BccI CCATC 3 cut(s) 118, 238, 262
BcoDI GTCTC 1 cut(s) 32
BfmI CTRYAG 2 cut(s) 153, 177
BisI GCNGC 2 cut(s) 153, 156
BlsI GCNGC 2 cut(s) 154, 157
BmiI GGNNCC 3 cut(s) 79, 91, 250
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 2 cut(s) 27, 134
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 139, 167
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 28, 133
BspLI GGNNCC 3 cut(s) 79, 91, 250
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 36, 120
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 130
BstSFI CTRYAG 2 cut(s) 153, 177
BstV1I GCAGC 2 cut(s) 139, 167
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 2 cut(s) 84, 158
CviAII CATG 2 cut(s) 58, 134
CviJI RGCY 2 cut(s) 152, 249
CviKI_1 RGCY 2 cut(s) 152, 249
DdeI CTNAG 2 cut(s) 36, 120
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 2 cut(s) 61, 137
FaiI YATR 6 cut(s) 23, 59, 63, 135, 285, 305
FaqI GGGAC 1 cut(s) 43
FatI CATG 2 cut(s) 57, 133
Fnu4HI GCNGC 2 cut(s) 153, 156
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 2 cut(s) 153, 156
GluI GCNGC 2 cut(s) 153, 156
Hin1II CATG 2 cut(s) 61, 137
HinfI GANTC 1 cut(s) 40
HphI GGTGA 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 37, 123
HpyAV CCTTC 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 61, 155
HpyF3I CTNAG 2 cut(s) 36, 120
Hsp92II CATG 2 cut(s) 61, 137
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 3 cut(s) 149, 176, 254
LpnPI CCDG 4 cut(s) 72, 94, 195, 266
Lsp1109I GCAGC 2 cut(s) 139, 167
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 2 cut(s) 202, 287
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 92, 122
Mph1103I ATGCAT 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 56
NdeII GATC 1 cut(s) 130
NlaIII CATG 2 cut(s) 61, 137
NlaIV GGNNCC 3 cut(s) 79, 91, 250
NmuCI GTSAC 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 63
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 2 cut(s) 154, 157
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PspN4I GGNNCC 3 cut(s) 79, 91, 250
PstI CTGCAG 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 56
SatI GCNGC 2 cut(s) 153, 156
Sau3AI GATC 1 cut(s) 130
SchI GAGTC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 251
SetI ASST 2 cut(s) 154, 263
SfcI CTRYAG 2 cut(s) 153, 177
SgeI CNNG 9 cut(s) 70, 93, 99, 146, 158, 177, 222, 265, 274
SmiMI CAYNNNNRTG 1 cut(s) 56
Sse9I AATT 2 cut(s) 202, 287
SsiI CCGC 1 cut(s) 174
StyI CCWWGG 1 cut(s) 261
TasI AATT 2 cut(s) 202, 287
TscAI CASTG 2 cut(s) 91, 165
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 152, 155
Tsp45I GTSAC 1 cut(s) 223
TspRI CASTG 2 cut(s) 91, 165
Van91I CCANNNNNTGG 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.