Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000762.1

Orthogroup ID

OG0018941

Physical Location & Seq

Genomic Coordinates Reverse (-)

221925 .. 226446

Gene Structure 4522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000762.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgtctcatctcgatcccctaaaagtgacgagatcacatatacctgctgcaaacatgcctgcaaggattgatgtccccacaagagtacatggcaccaccaccatggatggtagtatggtgatgccagaaggtggcataatggctgctgagaaggctaggaatgaagggcatggagataaagaaaccagagcagctcaaaaccatggcctcactcatccgcaacatccgactgagacccagaaccaagtcaggtacttcacatctgctccactacctacagatccagataagcttccaaagcctgctccaaagaaggagtccagcaattctaaggcttcagatttcaatccaaatgagggtcctactgttttgtcacctccaagaaagtcaaggagagtgatgccagaatgtgtgagttttgaaggaaatgcaccccaatcggataatgtcgatgatcatgtcagagacttccgacaggctgccggtgaaagtacaagcaggaatgaaccggtgccgatgtcggtagattttccatctttggagcaacattttactaaattttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

188

Amino Acids

20.66

Weight (kDa)

6.5

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346601 RchiOBHm_Chr2g0108991
rosa_multiflora	Rmu_sc0000762.1_g000062 Rmu_sc0001512.1_g000007 Rmu_sc0004343.1_g000007
rosa_rugosa	Rorug03G0090100 Rorug04G0254300 Rorug05G0270300 Rorug07G0046000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
AccB1I	GGYRCC	2 cut(s)	92, 511
AccB7I	CCANNNNNTGG	1 cut(s)	131
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	2 cut(s)	8, 275
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	87, 254, 493
AfiI	CCNNNNNNNGG	2 cut(s)	131, 356
AgeI	ACCGGT	1 cut(s)	508
AgsI	TTSAA	2 cut(s)	346, 422
AluBI	AGCT	2 cut(s)	194, 292
AluI	AGCT	2 cut(s)	194, 292
Alw26I	GTCTC	3 cut(s)	9, 227, 459
AlwI	GGATC	2 cut(s)	8, 275
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	4 cut(s)	47, 143, 191, 479
ApoI	RAATTY	1 cut(s)	557
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AsiGI	ACCGGT	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	130, 366, 497
AvaII	GGWCC	1 cut(s)	359
BanI	GGYRCC	2 cut(s)	92, 511
BbvI	GCAGC	4 cut(s)	34, 130, 203, 466
BccI	CCATC	2 cut(s)	101, 541
BcgI	CGANNNNNNTGC	2 cut(s)	420, 454
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	9, 227, 459
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	4 cut(s)	48, 144, 192, 480
BlsI	GCNGC	4 cut(s)	49, 145, 193, 481
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	3 cut(s)	94, 360, 513
BmsI	GCATC	2 cut(s)	111, 390
BsaBI	GATNNNNATC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	102, 202
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 356
Bse118I	RCCGGY	2 cut(s)	482, 508
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	102, 202
BseGI	GGATG	3 cut(s)	112, 214, 223
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	131, 356
BseMII	CTCAG	2 cut(s)	138, 222
BseXI	GCAGC	4 cut(s)	34, 130, 203, 466
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	2 cut(s)	92, 511
BshTI	ACCGGT	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	483, 509
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	131, 356
BsmAI	GTCTC	3 cut(s)	9, 227, 459
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	227
Bsp143I	GATC	4 cut(s)	13, 32, 280, 454
Bsp19I	CCATGG	2 cut(s)	102, 202
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	139, 223
BspLI	GGNNCC	3 cut(s)	94, 360, 513
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	2 cut(s)	8, 275
BspT107I	GGYRCC	2 cut(s)	92, 511
BspTNI	GGTCTC	1 cut(s)	227
BsrFI	RCCGGY	2 cut(s)	482, 508
BssAI	RCCGGY	2 cut(s)	482, 508
BssECI	CCNNGG	2 cut(s)	102, 202
BssMI	GATC	4 cut(s)	13, 32, 280, 454
BssT1I	CCWWGG	2 cut(s)	102, 202
Bst4CI	ACNGT	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	60, 303
BstDEI	CTNAG	3 cut(s)	147, 231, 330
BstDSI	CCRYGG	2 cut(s)	102, 202
BstF5I	GGATG	3 cut(s)	112, 214, 223
BstKTI	GATC	4 cut(s)	16, 35, 283, 457
BstMAI	GTCTC	3 cut(s)	9, 227, 459
BstMBI	GATC	4 cut(s)	13, 32, 280, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 298
BstNSI	RCATGY	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	4 cut(s)	34, 130, 203, 466
BstX2I	RGATCY	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	102, 202
BtsCI	GGATG	3 cut(s)	112, 214, 223
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	2 cut(s)	60, 303
Cfr10I	RCCGGY	2 cut(s)	482, 508
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	86, 253, 492
CspAI	ACCGGT	1 cut(s)	508
CviAII	CATG	6 cut(s)	55, 89, 103, 170, 203, 458
CviJI	RGCY	8 cut(s)	143, 155, 194, 207, 292, 301, 335, 479
CviKI_1	RGCY	8 cut(s)	143, 155, 194, 207, 292, 301, 335, 479
CviQI	GTAC	3 cut(s)	86, 253, 492
DdeI	CTNAG	3 cut(s)	147, 231, 330
DpnI	GATC	4 cut(s)	15, 34, 282, 456
DpnII	GATC	4 cut(s)	13, 32, 280, 454
Eco130I	CCWWGG	2 cut(s)	102, 202
Eco31I	GGTCTC	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	359
EcoT14I	CCWWGG	2 cut(s)	102, 202
ErhI	CCWWGG	2 cut(s)	102, 202
FaeI	CATG	6 cut(s)	58, 92, 106, 173, 206, 461
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	6 cut(s)	54, 88, 102, 169, 202, 457
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	4 cut(s)	48, 144, 192, 480
FokI	GGATG	3 cut(s)	119, 201, 210
Fsp4HI	GCNGC	4 cut(s)	48, 144, 192, 480
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	4 cut(s)	48, 144, 192, 480
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	483, 509
Hin1II	CATG	6 cut(s)	58, 92, 106, 173, 206, 461
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	2 cut(s)	483, 509
HphI	GGTGA	3 cut(s)	130, 366, 497
Hpy188I	TCNGA	5 cut(s)	228, 340, 442, 464, 473
Hpy188III	TCNNGA	2 cut(s)	11, 284
HpyAV	CCTTC	5 cut(s)	122, 145, 158, 307, 416
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	50, 62, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 298
HpyF3I	CTNAG	3 cut(s)	147, 231, 330
Hsp92II	CATG	6 cut(s)	58, 92, 106, 173, 206, 461
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	4 cut(s)	13, 32, 280, 454
LmnI	GCTCC	3 cut(s)	271, 310, 541
Lsp1109I	GCAGC	4 cut(s)	34, 130, 203, 466
LweI	GCATC	2 cut(s)	111, 390
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	25, 372
MalI	GATC	4 cut(s)	15, 34, 282, 456
MboI	GATC	4 cut(s)	13, 32, 280, 454
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	2 cut(s)	325, 557
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	251, 496
MnlI	CCTC	3 cut(s)	218, 349, 387
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	2 cut(s)	483, 509
MwoI	GCNNNNNNNGC	2 cut(s)	152, 298
NcoI	CCATGG	2 cut(s)	102, 202
NdeII	GATC	4 cut(s)	13, 32, 280, 454
NlaIII	CATG	6 cut(s)	58, 92, 106, 173, 206, 461
NlaIV	GGNNCC	3 cut(s)	94, 360, 513
NmuCI	GTSAC	2 cut(s)	25, 372
NspI	RCATGY	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	131
PinAI	ACCGGT	1 cut(s)	508
PkrI	GCNGC	4 cut(s)	49, 145, 193, 481
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
PspN4I	GGNNCC	3 cut(s)	94, 360, 513
PspPI	GGNCC	1 cut(s)	359
PspPPI	RGGWCCY	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	3 cut(s)	87, 254, 493
RsaNI	GTAC	3 cut(s)	86, 253, 492
RseI	CAYNNNNRTG	1 cut(s)	101
SatI	GCNGC	4 cut(s)	48, 144, 192, 480
Sau3AI	GATC	4 cut(s)	13, 32, 280, 454
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	326
SetI	ASST	7 cut(s)	46, 133, 196, 254, 277, 294, 379
SfaNI	GCATC	2 cut(s)	111, 390
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	325, 557
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	102, 202
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	12, 450
TasI	AATT	2 cut(s)	325, 557
TatI	WGTACW	2 cut(s)	85, 491
TseFI	GTSAC	2 cut(s)	25, 372
TseI	GCWGC	4 cut(s)	47, 143, 191, 479
Tsp45I	GTSAC	2 cut(s)	25, 372
TspDTI	ATGAA	2 cut(s)	177, 519
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.