Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001512.1

Orthogroup ID

OG0018941

Physical Location & Seq

Genomic Coordinates Reverse (-)

30144 .. 33254

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001512.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgcagcgaggccaaaagcgcagagaagactcggttctcgccggaattgaagaatctcttcactctggaatctccgtcgttcactctggtttgggcgcggaggtattcggcggcgaggcgggagtggagagacttgattctctcctgattcagatccagcacaaatgcgtccagccttttacccaagaatccactggagactacatcaccgccttgagcttgctggatttcaataccttggttctggactgtattgtggtcactgagtttgtaaaatctcctactcgctgcaggtacttcacatctgctccactacctacagatccagataagcttccaaagcctgctccaaagaaggagtccagcaattctaaggcttcagatttcaatccaaatgagggtcctactgttttgtcacctccaagaaagtcaaggagagtgatgccagaatgtgtgagttttgaaggaaatgcaccccaatcggataatgtcgatgatcatgtcagagacttccgacaggctgccggtgaaagtacaagcaggaatgaaccggtgccgatgtcggtagattttccatctttggagcaacattttactaaattttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

202

Amino Acids

22.23

Weight (kDa)

5.4

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346601 RchiOBHm_Chr2g0108991
rosa_multiflora	Rmu_sc0000762.1_g000062 Rmu_sc0001512.1_g000007 Rmu_sc0004343.1_g000007
rosa_rugosa	Rorug03G0090100 Rorug04G0254300 Rorug05G0270300 Rorug07G0046000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	553
AccII	CGCG	1 cut(s)	98
AciI	CCGC	4 cut(s)	98, 111, 119, 210
AclWI	GGATC	2 cut(s)	148, 317
AcsI	RAATTY	1 cut(s)	599
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	2 cut(s)	296, 535
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgeI	ACCGGT	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	50, 232, 388, 464
AluBI	AGCT	2 cut(s)	219, 334
AluI	AGCT	2 cut(s)	219, 334
Alw26I	GTCTC	3 cut(s)	124, 192, 501
AlwI	GGATC	2 cut(s)	148, 317
AoxI	GGCC	1 cut(s)	10
ApeKI	GCWGC	3 cut(s)	4, 288, 521
ApoI	RAATTY	1 cut(s)	599
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AsiGI	ACCGGT	1 cut(s)	550
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	2 cut(s)	21, 98
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	199, 408, 539
AvaII	GGWCC	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	16, 275, 508
BccI	CCATC	1 cut(s)	583
BcgI	CGANNNNNNTGC	2 cut(s)	462, 496
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	3 cut(s)	124, 192, 501
BfmI	CTRYAG	2 cut(s)	289, 318
BfuAI	ACCTGC	1 cut(s)	282
BisI	GCNGC	4 cut(s)	5, 112, 289, 522
BlsI	GCNGC	4 cut(s)	6, 113, 290, 523
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	402, 555
BmsI	GCATC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	235
BsaBI	GATNNNNATC	2 cut(s)	152, 387
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse118I	RCCGGY	2 cut(s)	524, 550
Bse1I	ACTGG	1 cut(s)	199
Bse8I	GATNNNNATC	2 cut(s)	152, 387
BseDI	CCNNGG	1 cut(s)	237
BseJI	GATNNNNATC	2 cut(s)	152, 387
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	3 cut(s)	16, 275, 508
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	12
BshNI	GGYRCC	1 cut(s)	553
BshTI	ACCGGT	1 cut(s)	550
BsiSI	CCGG	3 cut(s)	42, 525, 551
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	3 cut(s)	124, 192, 501
BsnI	GGCC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	153, 322, 496
BspACI	CCGC	4 cut(s)	98, 111, 119, 210
BspANI	GGCC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	402, 555
BspMAI	CTGCAG	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	148, 317
BspT107I	GGYRCC	1 cut(s)	553
BsrFI	RCCGGY	2 cut(s)	524, 550
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	2 cut(s)	524, 550
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	3 cut(s)	153, 322, 496
BssT1I	CCWWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	251, 409
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	221, 345
BstDEI	CTNAG	2 cut(s)	264, 372
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	21, 98
BstKTI	GATC	3 cut(s)	156, 325, 499
BstMAI	GTCTC	3 cut(s)	124, 192, 501
BstMBI	GATC	3 cut(s)	153, 322, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 340
BstSFI	CTRYAG	2 cut(s)	289, 318
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	16, 275, 508
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	2 cut(s)	153, 322
BstYI	RGATCY	2 cut(s)	153, 322
BsuRI	GGCC	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	192, 261
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	221, 345
CfoI	GCGC	2 cut(s)	21, 98
Cfr10I	RCCGGY	2 cut(s)	524, 550
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	295, 534
CspAI	ACCGGT	1 cut(s)	550
CviAII	CATG	1 cut(s)	500
CviJI	RGCY	7 cut(s)	12, 175, 219, 334, 343, 377, 521
CviKI_1	RGCY	7 cut(s)	12, 175, 219, 334, 343, 377, 521
CviQI	GTAC	2 cut(s)	295, 534
DdeI	CTNAG	2 cut(s)	264, 372
DpnI	GATC	3 cut(s)	155, 324, 498
DpnII	GATC	3 cut(s)	153, 322, 496
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	1 cut(s)	503
FaiI	YATR	1 cut(s)	501
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FatI	CATG	1 cut(s)	499
FauI	CCCGC	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	4 cut(s)	5, 112, 289, 522
Fsp4HI	GCNGC	4 cut(s)	5, 112, 289, 522
GlaI	GCGC	2 cut(s)	20, 97
GluI	GCNGC	4 cut(s)	5, 112, 289, 522
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	12
HapII	CCGG	3 cut(s)	42, 525, 551
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	2 cut(s)	21, 98
Hin1II	CATG	1 cut(s)	503
Hin6I	GCGC	2 cut(s)	19, 96
HinP1I	GCGC	2 cut(s)	19, 96
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	7 cut(s)	29, 53, 69, 137, 148, 188, 359
HpaII	CCGG	3 cut(s)	42, 525, 551
HphI	GGTGA	3 cut(s)	199, 408, 539
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	5 cut(s)	153, 382, 484, 506, 515
Hpy188III	TCNNGA	4 cut(s)	66, 145, 245, 326
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	349, 458
HpyCH4III	ACNGT	2 cut(s)	251, 409
HpyCH4V	TGCA	3 cut(s)	4, 291, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 340
HpyF3I	CTNAG	2 cut(s)	264, 372
Hsp92II	CATG	1 cut(s)	503
HspAI	GCGC	2 cut(s)	19, 96
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	153, 322, 496
LmnI	GCTCC	3 cut(s)	313, 352, 583
Lsp1109I	GCAGC	3 cut(s)	16, 275, 508
LweI	GCATC	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	259, 414
MalI	GATC	3 cut(s)	155, 324, 498
MboI	GATC	3 cut(s)	153, 322, 496
MboII	GAAGA	3 cut(s)	38, 50, 62
MflI	RGATCY	2 cut(s)	153, 322
MluCI	AATT	3 cut(s)	45, 367, 599
MlyI	GAGTC	2 cut(s)	23, 368
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	4 cut(s)	94, 109, 391, 429
MroXI	GAANNNNTTC	1 cut(s)	57
MspI	CCGG	3 cut(s)	42, 525, 551
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	18, 340
NdeII	GATC	3 cut(s)	153, 322, 496
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	2 cut(s)	402, 555
NmuCI	GTSAC	2 cut(s)	259, 414
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	5 cut(s)	53, 69, 137, 148, 188
PinAI	ACCGGT	1 cut(s)	550
PkrI	GCNGC	4 cut(s)	6, 113, 290, 523
PleI	GAGTC	2 cut(s)	23, 367
PpsI	GAGTC	2 cut(s)	23, 367
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	402, 555
PspPI	GGNCC	1 cut(s)	401
PspPPI	RGGWCCY	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	293
PsuI	RGATCY	2 cut(s)	153, 322
RsaI	GTAC	2 cut(s)	296, 535
RsaNI	GTAC	2 cut(s)	295, 534
SatI	GCNGC	4 cut(s)	5, 112, 289, 522
Sau3AI	GATC	3 cut(s)	153, 322, 496
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	2 cut(s)	23, 368
SetI	ASST	7 cut(s)	105, 221, 239, 296, 319, 336, 421
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	2 cut(s)	289, 318
SinI	GGWCC	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	3 cut(s)	45, 367, 599
SsiI	CCGC	4 cut(s)	98, 111, 119, 210
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	251, 409
TaqI	TCGA	1 cut(s)	492
TasI	AATT	3 cut(s)	45, 367, 599
TatI	WGTACW	1 cut(s)	533
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	5 cut(s)	53, 69, 137, 148, 188
TscAI	CASTG	2 cut(s)	199, 268
TseFI	GTSAC	2 cut(s)	259, 414
TseI	GCWGC	3 cut(s)	4, 288, 521
Tsp45I	GTSAC	2 cut(s)	259, 414
TspDTI	ATGAA	1 cut(s)	561
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	2 cut(s)	199, 268
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.