Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0018941

Physical Location & Seq

Genomic Coordinates Reverse (-)

30486125 .. 30533631

Gene Structure 47507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0270300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGGCGAAGAGAGCAGAAACGTCACATTCTCATCGCATATACGAGGAACGAGAAGAGAAACTCGTGTCTTCAAAAGACGGGAAGCAGTTCAGAAGAGTCGCAAGGTTTCTCAAACCATGTGCTCCGAATTCGAGCAAAGCAGTGGGACCCTCAAATACTCCATTGTTGTCTGACGTCTTTCCTCAGAGTCTTCAACAATGGCCGTCCACGGTTGTGTTCCCGGGTTGCAAGAAGCCCCAGGAAAAATGGGTGGAGTGGATTGATAGGCTGGCCGGAAAGTACTGTACTATTTGGAACCAAGCTGGGATTTGCGATGCTATTATGAGCTCCAAGTATGAGACCAAGTTTAACAAGGATTTGGTGCTGGTTATGGCCGAGTTTTGGTGCTCGGAGACTAATACATTCTTGTTTGATTGGGGCGAAGCGACGATCACAATGGAGGATGTGATGGTTCTTGGTGGGTTTTCGGTTCTGGGTAAGCAGGTGACGAGGCCCATTAATGGGGTGATGATGGAAACAGTGGAGGAGATGGAGAAGAAGAAGACGGAGCTGACGAGAACTCCGGCGAAGAAAGCTGATCACTTTAACTGGATGACCCATTTTATGAAGCTTCAGGACTACAAGCATGAACATGTGGCATTCCTGTCTCTGTGGTTGGCAAGGTTCGTCTTTCCTTCTCTTCCTGAAGACAGCTTAGGCAAACATGTGTTTCCCATTGCTGTTCTTTTGTCACAGGGCACTAGAGTTGCTCTGGCTCCTGCAGTTCTTGCAGGGCTTTTCAGAGATTTAAGCTTTTTGGAAAACCAAGCAATTAAGGGTGAGGAGATGATCTCTGTTTGGAGCCCATTTCAGCTGTTGCAGTTGTGGGCGTTGGAGAGGTTTCAGGGTGTGGTTAAGAGTCCACCAAAGAGACTGAACCCCGGTGAGCCTAGGGCGGCTCGGTGGAACAAAGTGAACATTAAGATTAGTCTTCCTGATGTGAGGAGAGAGGTTAACTTGGCTAAGAATTTTCGGTGGCGGCCTTATACTGCTGAACTGACCAATTGGCTACATGGTTCTTACTACCAAGCTAAGGAACTGTGCTTTTATGATAAAACTACGGACCAGAATTTGCAGTCTTATGTTAAATGCTTGTGTTGTGCTGAGTTGGTTGGAGTAGAAGATTGTAAGGAGAAGTATTTGCCGCACAGGGTGGCAATGCAGTTTGGAATTGATCAAGACCTTCCTGGGGATCCTGTTGAACGCTCAGGGTTGGATTGTAACTCGGGCACTACCGATGTTCGTTTCTTTCTTCCAGGACGGTCCTTTGAGCCGAGTGTAACAGCTAGGTACTCATATTGGTGGGGAATATATAAGTCTGCTCGCGCGGATGCAATCAAAGATGATGTCAAAGTGGCTGAAAAAAAGATTAAGGAGAAGAGTCATCATCACTCCATGGAAGAGAAGAATTTGAAGGCGCATAAGGCATCTACAAAAGCTTTATCAAAGTGTGAACTTGAAAAGAACCACTTCTGTGCTGTGCCTAAAGTCTCAAGAAAATCCAATTGTGCTGTCAGGACACAACCATCAGCCACTGCTCAATTTCCCAAGAAGGTCAAGAAAGATTTGTCCCTAAATCATAGTGATGGTGGCGATATTCCTCTGTTGAAACAAAGGGGACTTGTGGAAAAGAGACCGGCTTGTCTCCGTAATGCTTCGACAACCAGGAAATCCACAAAATATGTTTCCTCACAGTCACGTAACCCAAATGAAAATATGAAGAAACGGAAGCTGGCTACACCAACTGAAGAGTTTCCTGCTAAGAAAAGAAATATTAGCGAGTATGCCAAAAATCTTTGGAGGGTTGCTACAAATGGGACGAAGGATAGTGATATTGCAAATGTTCAAAGTAATGTCAGGATAACGCATGAGCATCAAGTGAGAGCTAAAGTATCAGACAAAGGTTCTGCAAAAGGTGGGAAGAAAGCAATGGCTGATGGGTCTCTGAAGAAACCCATGGGGGTTGATGGCCATAAAGTGAAACAATCTGAAAGGTGTGCTGCAAAAGGTGGGAAAAAAGCAATGGCCGAAAGGACTCTGAAGAAACCCATGGAGGCTGATGGTCATAAAGTGAAACAATCCAAAAGGGGTGCTGTGAAAGAAGTAAAGAGAACGACGGAGAATGCTAGAACTAGACCTCAGAAAGATGGATTACTGATGAGGGTTCAGAATCTGGAGAAAATTGTGGGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

744

Amino Acids

84.35

Weight (kDa)

9.67

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	102 - 448	2.8e-87	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346601 RchiOBHm_Chr2g0108991
rosa_multiflora	Rmu_sc0000762.1_g000062 Rmu_sc0001512.1_g000007 Rmu_sc0004343.1_g000007
rosa_rugosa	Rorug03G0090100 Rorug04G0254300 Rorug05G0270300 Rorug07G0046000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	472
AasI	GACNNNNNNGTC	1 cut(s)	1680
AatII	GACGTC	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	472
AccII	CGCG	2 cut(s)	1365, 1367
AciI	CCGC	4 cut(s)	935, 1018, 1184, 1367
AclWI	GGATC	2 cut(s)	1226, 1239
AcoI	YGGCCR	5 cut(s)	200, 270, 372, 2008, 2064
AcsI	RAATTY	4 cut(s)	127, 1006, 1108, 1447
AcuI	CTGAAG	5 cut(s)	596, 705, 1806, 2006, 2099
AcyI	GRCGYC	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	1192
AfaI	GTAC	3 cut(s)	281, 286, 1331
AfiI	CCNNNNNNNGG	5 cut(s)	381, 500, 501, 1072, 1228
AflIII	ACRYGT	2 cut(s)	631, 703
AgsI	TTSAA	7 cut(s)	72, 194, 1241, 1453, 1499, 1648, 1886
AjnI	CCWGG	4 cut(s)	237, 1225, 1294, 1703
AleI	CACNNNNGTG	2 cut(s)	212, 1512
Alw21I	GWGCWC	3 cut(s)	124, 329, 389
Alw26I	GTCTC	8 cut(s)	332, 386, 651, 904, 1534, 1666, 1688, 1986
AlwI	GGATC	2 cut(s)	1226, 1239
AlwNI	CAGNNNCTG	2 cut(s)	1574, 2212
Ama87I	CYCGRG	2 cut(s)	220, 1264
AoxI	GGCC	7 cut(s)	200, 270, 372, 491, 1019, 2008, 2064
ApeKI	GCWGC	1 cut(s)	2039
ApoI	RAATTY	4 cut(s)	127, 1006, 1108, 1447
ArsI	GACNNNNNNTTYG	2 cut(s)	1371, 1403
AseI	ATTAAT	1 cut(s)	498
Asp700I	GAANNNNTTC	3 cut(s)	86, 1508, 1791
AspA2I	CCTAGG	1 cut(s)	929
AspLEI	GCGC	2 cut(s)	1367, 1459
AspS9I	GGNCC	4 cut(s)	146, 492, 1102, 1302
AsuC2I	CCSGG	3 cut(s)	221, 222, 921
AsuHPI	GGTGA	4 cut(s)	496, 517, 830, 935
AvaI	CYCGRG	2 cut(s)	220, 1264
AvaII	GGWCC	3 cut(s)	146, 1102, 1302
AvrII	CCTAGG	1 cut(s)	929
BaeGI	GKGCMC	2 cut(s)	740, 1271
BalI	TGGCCA	1 cut(s)	2010
BamHI	GGATCC	1 cut(s)	1231
BanII	GRGCYC	2 cut(s)	329, 845
BauI	CACGAG	1 cut(s)	62
BbsI	GAAGAC	5 cut(s)	60, 182, 548, 693, 962
Bbv12I	GWGCWC	3 cut(s)	124, 329, 389
BbvI	GCAGC	1 cut(s)	2026
BccI	CCATC	9 cut(s)	442, 505, 523, 1573, 1619, 1970, 2000, 2093, 2180
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	4 cut(s)	239, 1227, 1296, 1705
BclI	TGATCA	2 cut(s)	577, 1213
BcnI	CCSGG	3 cut(s)	221, 222, 921
BcoDI	GTCTC	8 cut(s)	332, 386, 651, 904, 1534, 1666, 1688, 1986
BfaI	CTAG	5 cut(s)	741, 930, 1326, 2166, 2172
BfmI	CTRYAG	1 cut(s)	759
BfuAI	ACCTGC	1 cut(s)	472
BisI	GCNGC	4 cut(s)	936, 1019, 1184, 2040
BlnI	CCTAGG	1 cut(s)	929
BlsI	GCNGC	4 cut(s)	937, 1020, 1185, 2041
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	7 cut(s)	221, 222, 239, 921, 1227, 1296, 1705
Bme18I	GGWCC	3 cut(s)	146, 1102, 1302
BmeT110I	CYCGRG	2 cut(s)	220, 1264
BmgT120I	GGNCC	4 cut(s)	146, 492, 1102, 1302
BmiI	GGNNCC	6 cut(s)	147, 148, 296, 756, 842, 1233
BmrFI	CCNGG	7 cut(s)	221, 222, 239, 921, 1227, 1296, 1705
BmsI	GCATC	4 cut(s)	304, 1360, 1475, 1921
BpiI	GAAGAC	5 cut(s)	60, 182, 548, 693, 962
BplI	GAGNNNNNCTC	2 cut(s)	815, 847
BpmI	CTGGAG	1 cut(s)	2234
Bpu10I	CCTNAGC	3 cut(s)	694, 1071, 1246
BpuEI	CTTGAG	1 cut(s)	1516
BpuMI	CCSGG	3 cut(s)	221, 222, 921
BsaAI	YACGTR	1 cut(s)	1739
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	3 cut(s)	332, 1666, 1986
BsaJI	CCNNGG	9 cut(s)	207, 220, 237, 919, 929, 1226, 1434, 1995, 2088
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	5 cut(s)	381, 500, 501, 1072, 1228
Bse118I	RCCGGY	1 cut(s)	1675
Bse1I	ACTGG	1 cut(s)	593
Bse3DI	GCAATG	4 cut(s)	714, 1203, 1974, 2067
BseBI	CCWGG	4 cut(s)	239, 1227, 1296, 1705
BseDI	CCNNGG	9 cut(s)	207, 220, 237, 919, 929, 1226, 1434, 1995, 2088
BseGI	GGATG	3 cut(s)	448, 597, 1375
BseLI	CCNNNNNNNGG	5 cut(s)	381, 500, 501, 1072, 1228
BseMI	GCAATG	4 cut(s)	714, 1203, 1974, 2067
BseMII	CTCAG	4 cut(s)	197, 1134, 1260, 2192
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	3 cut(s)	539, 836, 997
BseSI	GKGCMC	2 cut(s)	740, 1271
BseXI	GCAGC	1 cut(s)	2026
BseYI	CCCAGC	1 cut(s)	302
Bsh1236I	CGCG	2 cut(s)	1365, 1367
BshFI	GGCC	7 cut(s)	202, 272, 374, 493, 1021, 2010, 2066
BsiHKAI	GWGCWC	3 cut(s)	124, 329, 389
BsiHKCI	CYCGRG	2 cut(s)	220, 1264
BsiSI	CCGG	5 cut(s)	221, 273, 563, 921, 1676
BslFI	GGGAC	4 cut(s)	159, 1594, 1671, 1870
BslI	CCNNNNNNNGG	5 cut(s)	381, 500, 501, 1072, 1228
BsmAI	GTCTC	8 cut(s)	332, 386, 651, 904, 1534, 1666, 1688, 1986
BsmFI	GGGAC	4 cut(s)	159, 1594, 1671, 1870
BsmI	GAATGC	2 cut(s)	638, 2167
BsnI	GGCC	7 cut(s)	202, 272, 374, 493, 1021, 2010, 2066
Bso31I	GGTCTC	3 cut(s)	332, 1666, 1986
BsoBI	CYCGRG	2 cut(s)	220, 1264
Bsp1286I	GDGCHC	6 cut(s)	124, 329, 389, 740, 845, 1271
Bsp143I	GATC	5 cut(s)	429, 577, 828, 1213, 1231
Bsp19I	CCATGG	3 cut(s)	1434, 1995, 2088
BspACI	CCGC	4 cut(s)	935, 1018, 1184, 1367
BspANI	GGCC	7 cut(s)	202, 272, 374, 493, 1021, 2010, 2066
BspCNI	CTCAG	4 cut(s)	196, 1135, 1259, 2191
BspFNI	CGCG	2 cut(s)	1365, 1367
BspLI	GGNNCC	6 cut(s)	147, 148, 296, 756, 842, 1233
BspMAI	CTGCAG	1 cut(s)	763
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	2 cut(s)	1226, 1239
BspTNI	GGTCTC	3 cut(s)	332, 1666, 1986
BsrDI	GCAATG	4 cut(s)	714, 1203, 1974, 2067
BsrFI	RCCGGY	1 cut(s)	1675
BsrI	ACTGG	1 cut(s)	593
BssAI	RCCGGY	1 cut(s)	1675
BssECI	CCNNGG	9 cut(s)	207, 220, 237, 919, 929, 1226, 1434, 1995, 2088
BssMI	GATC	5 cut(s)	429, 577, 828, 1213, 1231
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	4 cut(s)	929, 1434, 1995, 2088
Bst2BI	CACGAG	1 cut(s)	62
Bst2UI	CCWGG	4 cut(s)	239, 1227, 1296, 1705
Bst4CI	ACNGT	6 cut(s)	211, 284, 520, 1080, 1302, 1734
Bst6I	CTCTTC	7 cut(s)	2, 48, 88, 684, 1412, 1434, 1782
BstACI	GRCGYC	1 cut(s)	174
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstBAI	YACGTR	1 cut(s)	1739
BstC8I	GCNNGC	3 cut(s)	270, 1363, 1773
BstDEI	CTNAG	8 cut(s)	183, 694, 1002, 1071, 1143, 1246, 1800, 2178
BstDSI	CCRYGG	4 cut(s)	207, 1434, 1995, 2088
BstF5I	GGATG	3 cut(s)	448, 597, 1375
BstFNI	CGCG	2 cut(s)	1365, 1367
BstHHI	GCGC	2 cut(s)	1367, 1459
BstKTI	GATC	5 cut(s)	432, 580, 831, 1216, 1234
BstMAI	GTCTC	8 cut(s)	332, 386, 651, 904, 1534, 1666, 1688, 1986
BstMBI	GATC	5 cut(s)	429, 577, 828, 1213, 1231
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 572, 767, 1463
BstNI	CCWGG	4 cut(s)	239, 1227, 1296, 1705
BstNSI	RCATGY	2 cut(s)	635, 707
BstSCI	CCNGG	7 cut(s)	219, 220, 237, 919, 1225, 1294, 1703
BstSFI	CTRYAG	1 cut(s)	759
BstSLI	GKGCMC	2 cut(s)	740, 1271
BstUI	CGCG	2 cut(s)	1365, 1367
BstV1I	GCAGC	1 cut(s)	2026
BstV2I	GAAGAC	5 cut(s)	60, 182, 548, 693, 962
BstX2I	RGATCY	1 cut(s)	1231
BstYI	RGATCY	1 cut(s)	1231
BsuRI	GGCC	7 cut(s)	202, 272, 374, 493, 1021, 2010, 2066
BtgI	CCRYGG	4 cut(s)	207, 1434, 1995, 2088
BtgZI	GCGATG	2 cut(s)	17, 327
BtsCI	GGATG	3 cut(s)	448, 597, 1375
BtsI	GCAGTG	2 cut(s)	147, 1572
BtsIMutI	CAGTG	3 cut(s)	147, 525, 1572
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	3 cut(s)	270, 1363, 1773
CaiI	CAGNNNCTG	2 cut(s)	1574, 2212
CfoI	GCGC	2 cut(s)	1367, 1459
Cfr10I	RCCGGY	1 cut(s)	1675
Cfr13I	GGNCC	4 cut(s)	146, 492, 1102, 1302
Cfr9I	CCCGGG	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	280, 285, 1330
CviAII	CATG	9 cut(s)	117, 626, 632, 704, 1052, 1435, 1907, 1996, 2089
CviQI	GTAC	3 cut(s)	280, 285, 1330
DdeI	CTNAG	8 cut(s)	183, 694, 1002, 1071, 1143, 1246, 1800, 2178
DpnI	GATC	5 cut(s)	431, 579, 830, 1215, 1233
DpnII	GATC	5 cut(s)	429, 577, 828, 1213, 1231
DraIII	CACNNNGTG	1 cut(s)	1192
DrdI	GACNNNNNNGTC	1 cut(s)	1680
DseDI	GACNNNNNNGTC	1 cut(s)	1680
EaeI	YGGCCR	5 cut(s)	200, 270, 372, 2008, 2064
Eam1104I	CTCTTC	7 cut(s)	2, 48, 88, 684, 1412, 1434, 1782
EarI	CTCTTC	7 cut(s)	2, 48, 88, 684, 1412, 1434, 1782
Ecl136II	GAGCTC	1 cut(s)	327
Eco130I	CCWWGG	4 cut(s)	929, 1434, 1995, 2088
Eco24I	GRGCYC	2 cut(s)	329, 845
Eco31I	GGTCTC	3 cut(s)	332, 1666, 1986
Eco47I	GGWCC	3 cut(s)	146, 1102, 1302
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	5 cut(s)	596, 705, 1806, 2006, 2099
Eco88I	CYCGRG	2 cut(s)	220, 1264
EcoICRI	GAGCTC	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	4 cut(s)	237, 1225, 1294, 1703
EcoT14I	CCWWGG	4 cut(s)	929, 1434, 1995, 2088
EcoT38I	GRGCYC	2 cut(s)	329, 845
ErhI	CCWWGG	4 cut(s)	929, 1434, 1995, 2088
FaeI	CATG	9 cut(s)	120, 629, 635, 707, 1055, 1438, 1910, 1999, 2092
FalI	AAGNNNNNCTT	2 cut(s)	1493, 1525
FaqI	GGGAC	4 cut(s)	159, 1594, 1671, 1870
FatI	CATG	9 cut(s)	116, 625, 631, 703, 1051, 1434, 1906, 1995, 2088
FbaI	TGATCA	2 cut(s)	577, 1213
Fnu4HI	GCNGC	4 cut(s)	936, 1019, 1184, 2040
FokI	GGATG	3 cut(s)	455, 604, 1382
FriOI	GRGCYC	2 cut(s)	329, 845
Fsp4HI	GCNGC	4 cut(s)	936, 1019, 1184, 2040
FspBI	CTAG	5 cut(s)	741, 930, 1326, 2166, 2172
GlaI	GCGC	2 cut(s)	1366, 1458
GluI	GCNGC	4 cut(s)	936, 1019, 1184, 2040
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	2234
HaeIII	GGCC	7 cut(s)	202, 272, 374, 493, 1021, 2010, 2066
HapII	CCGG	5 cut(s)	221, 273, 563, 921, 1676
HhaI	GCGC	2 cut(s)	1367, 1459
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	9 cut(s)	120, 629, 635, 707, 1055, 1438, 1910, 1999, 2092
Hin6I	GCGC	2 cut(s)	1365, 1457
HinP1I	GCGC	2 cut(s)	1365, 1457
HincII	GTYRAC	1 cut(s)	994
HindII	GTYRAC	1 cut(s)	994
HindIII	AAGCTT	3 cut(s)	608, 790, 1476
HinfI	GANTC	6 cut(s)	96, 187, 898, 1420, 2074, 2209
HpaI	GTTAAC	1 cut(s)	994
HpaII	CCGG	5 cut(s)	221, 273, 563, 921, 1676
HphI	GGTGA	4 cut(s)	496, 517, 830, 935
Hpy166II	GTNNAC	5 cut(s)	207, 902, 955, 994, 1493
Hpy188III	TCNNGA	9 cut(s)	614, 683, 974, 1217, 1533, 1555, 1597, 1897, 2213
Hpy8I	GTNNAC	5 cut(s)	207, 902, 955, 994, 1493
Hpy99I	CGWCG	2 cut(s)	430, 2158
HpyAV	CCTTC	5 cut(s)	684, 1232, 1447, 1585, 1855
HpyCH4III	ACNGT	6 cut(s)	211, 284, 520, 1080, 1302, 1734
HpyCH4IV	ACGT	3 cut(s)	20, 174, 1738
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 572, 767, 1463
HpyF3I	CTNAG	8 cut(s)	183, 694, 1002, 1071, 1143, 1246, 1800, 2178
HpySE526I	ACGT	3 cut(s)	20, 174, 1738
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	9 cut(s)	120, 629, 635, 707, 1055, 1438, 1910, 1999, 2092
HspAI	GCGC	2 cut(s)	1365, 1457
KflI	GGGWCCC	1 cut(s)	146
Ksp22I	TGATCA	2 cut(s)	577, 1213
KspAI	GTTAAC	1 cut(s)	994
Kzo9I	GATC	5 cut(s)	429, 577, 828, 1213, 1231
LmnI	GCTCC	5 cut(s)	127, 332, 547, 760, 840
Lsp1109I	GCAGC	1 cut(s)	2026
LweI	GCATC	4 cut(s)	304, 1360, 1475, 1921
MaeI	CTAG	5 cut(s)	741, 930, 1326, 2166, 2172
MaeII	ACGT	3 cut(s)	20, 174, 1738
MaeIII	GTNAC	7 cut(s)	21, 484, 729, 1259, 1318, 1734, 1739
MalI	GATC	5 cut(s)	431, 579, 830, 1215, 1233
MboI	GATC	5 cut(s)	429, 577, 828, 1213, 1231
MfeI	CAATTG	2 cut(s)	1042, 1543
MflI	RGATCY	1 cut(s)	1231
MhlI	GDGCHC	6 cut(s)	124, 329, 389, 740, 845, 1271
MlsI	TGGCCA	1 cut(s)	2010
MluNI	TGGCCA	1 cut(s)	2010
MlyI	GAGTC	5 cut(s)	105, 196, 907, 1429, 2068
MmeI	TCCRAC	3 cut(s)	852, 1132, 1233
Mox20I	TGGCCA	1 cut(s)	2010
MroXI	GAANNNNTTC	3 cut(s)	86, 1508, 1791
MscI	TGGCCA	1 cut(s)	2010
MslI	CAYNNNNRTG	5 cut(s)	212, 630, 1339, 1512, 1623
Msp20I	TGGCCA	1 cut(s)	2010
MspA1I	CMGCKG	1 cut(s)	853
MspI	CCGG	5 cut(s)	221, 273, 563, 921, 1676
MspR9I	CCNGG	7 cut(s)	221, 222, 239, 921, 1227, 1296, 1705
MunI	CAATTG	2 cut(s)	1042, 1543
Mva1269I	GAATGC	2 cut(s)	638, 2167
MvaI	CCWGG	4 cut(s)	239, 1227, 1296, 1705
MvnI	CGCG	2 cut(s)	1365, 1367
MwoI	GCNNNNNNNGC	4 cut(s)	11, 572, 767, 1463
NciI	CCSGG	3 cut(s)	221, 222, 921
NcoI	CCATGG	3 cut(s)	1434, 1995, 2088
NdeII	GATC	5 cut(s)	429, 577, 828, 1213, 1231
NlaIII	CATG	9 cut(s)	120, 629, 635, 707, 1055, 1438, 1910, 1999, 2092
NlaIV	GGNNCC	6 cut(s)	147, 148, 296, 756, 842, 1233
NmeAIII	GCCGAG	2 cut(s)	400, 1338
NmuCI	GTSAC	4 cut(s)	21, 484, 729, 1734
NspI	RCATGY	2 cut(s)	635, 707
OliI	CACNNNNGTG	2 cut(s)	212, 1512
PaqCI	CACCTGC	1 cut(s)	472
PciI	ACATGT	2 cut(s)	631, 703
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PctI	GAATGC	2 cut(s)	638, 2167
PdmI	GAANNNNTTC	3 cut(s)	86, 1508, 1791
PfeI	GAWTC	1 cut(s)	2209
PfoI	TCCNGGA	1 cut(s)	1294
PkrI	GCNGC	4 cut(s)	937, 1020, 1185, 2041
PleI	GAGTC	5 cut(s)	104, 195, 906, 1428, 2068
PpsI	GAGTC	5 cut(s)	104, 195, 906, 1428, 2068
Ppu21I	YACGTR	1 cut(s)	1739
PpuMI	RGGWCCY	1 cut(s)	146
PscI	ACATGT	2 cut(s)	631, 703
PshBI	ATTAAT	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	4 cut(s)	237, 1225, 1294, 1703
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	4 cut(s)	237, 1225, 1294, 1703
PspN4I	GGNNCC	6 cut(s)	147, 148, 296, 756, 842, 1233
PspPI	GGNCC	4 cut(s)	146, 492, 1102, 1302
PspPPI	RGGWCCY	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	2 cut(s)	1574, 2212
PsuI	RGATCY	1 cut(s)	1231
PvuII	CAGCTG	1 cut(s)	853
RsaI	GTAC	3 cut(s)	281, 286, 1331
RsaNI	GTAC	3 cut(s)	280, 285, 1330
RseI	CAYNNNNRTG	5 cut(s)	212, 630, 1339, 1512, 1623
SacI	GAGCTC	1 cut(s)	329
SatI	GCNGC	4 cut(s)	936, 1019, 1184, 2040
Sau3AI	GATC	5 cut(s)	429, 577, 828, 1213, 1231
Sau96I	GGNCC	4 cut(s)	146, 492, 1102, 1302
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	5 cut(s)	105, 196, 907, 1429, 2068
ScrFI	CCNGG	7 cut(s)	221, 222, 239, 921, 1227, 1296, 1705
SduI	GDGCHC	6 cut(s)	124, 329, 389, 740, 845, 1271
SfaNI	GCATC	4 cut(s)	304, 1360, 1475, 1921
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	3 cut(s)	146, 1102, 1302
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	5 cut(s)	212, 630, 1339, 1512, 1623
SmlI	CTYRAG	1 cut(s)	1531
SmoI	CTYRAG	1 cut(s)	1531
SsiI	CCGC	4 cut(s)	935, 1018, 1184, 1367
SspI	AATATT	1 cut(s)	1813
SspMI	CTAG	5 cut(s)	741, 930, 1326, 2166, 2172
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	7 cut(s)	219, 220, 237, 919, 1225, 1294, 1703
StyI	CCWWGG	4 cut(s)	929, 1434, 1995, 2088
TaaI	ACNGT	6 cut(s)	211, 284, 520, 1080, 1302, 1734
TaiI	ACGT	3 cut(s)	23, 177, 1741
TaqI	TCGA	2 cut(s)	131, 1697
TatI	WGTACW	2 cut(s)	279, 284
TauI	GCSGC	3 cut(s)	938, 1021, 1186
TfiI	GAWTC	1 cut(s)	2209
TscAI	CASTG	3 cut(s)	147, 525, 1579
TseFI	GTSAC	4 cut(s)	21, 484, 729, 1734
TseI	GCWGC	1 cut(s)	2039
Tsp45I	GTSAC	4 cut(s)	21, 484, 729, 1734
TspDTI	ATGAA	4 cut(s)	620, 642, 1764, 1772
TspGWI	ACGGA	5 cut(s)	560, 1115, 1676, 1780, 2171
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	3 cut(s)	147, 525, 1579
VpaK11BI	GGWCC	3 cut(s)	146, 1102, 1302
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	4 cut(s)	127, 1006, 1108, 1447
XceI	RCATGY	2 cut(s)	635, 707
XmaI	CCCGGG	1 cut(s)	220
XmaJI	CCTAGG	1 cut(s)	929
XmnI	GAANNNNTTC	3 cut(s)	86, 1508, 1791
XspI	CTAG	5 cut(s)	741, 930, 1326, 2166, 2172
ZraI	GACGTC	1 cut(s)	175
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.