Rmu_sc0004343.1_g000007
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004343.1
Physical Location & Seq
Reverse (-)
15369 .. 21294
5926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004343.1_g000007.1.cds

Sequence Viewer

Length: 996 bp
atgataggtcatcctagtcatgatatgatgatccgtctactaaagacttcacatggacatcctttctctcaagcgaaacgaagcatgaatcaaaagttgattattgtacaaagtgtgaccaccgctgctgcctccggagccgccaccgtccaccaccagcctagggctggcatagtctttatccatgatgtcatggatagcgtacctcatggtgaagacgccctaggtgatgttgcaatcaccaactttgcttcgaataacgctcactccccggatcatcttattcaatcaattggatttgacattgctagagagtttacatcgaaaactttcgatggttattgcattgggactgacgttgggcattatatttttatgtacacacccaaatggtctcggggaaacgactacgatgatcgtcaggatattgtgctgagaaggctaggagtgaagggcgtggagataaagaaaccagagcagctcaaaaccatggcctcactcataatccctggaggagagagcaccaccatggctaagcttgccgagaaccacaacctggttctggactgtattgtggtcactgagtttgtaaaatctcctactcgctgcaggtacttcacatctgctccactacctacagatccagataagcttccaaagcctgctccaaagaaggagtccagcaattctaaggcttcagatttcaatccaaatgagggtcctactgttttgtcacctccaagaaagtcaaggagagtgatgccagaatgtgtgagttttgaaggaaatgcaccccaatcggataatgtcgatgatcatgtcagagacttccgacaggctgccggtgaaagtacaagcaggaatgaaccggtgccgatgtcgagagagggcggagccgcggagaggcggagatcgggagatgtctgggttcgagccttcgaggcctcgagggaaagagtggctgaggggaagagtgagggaactggattaggttaa

Protein Analysis

331

Amino Acids

36.3

Weight (kDa)

7.23

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 946
Acc36I ACCTGC 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 871
AccB7I CCANNNNNTGG 1 cut(s) 556
AccI GTMKAC 1 cut(s) 37
AccII CGCG 1 cut(s) 899
AccIII TCCGGA 1 cut(s) 134
AciI CCGC 6 cut(s) 123, 141, 891, 897, 899, 907
AclWI GGATC 3 cut(s) 25, 282, 635
AcuI CTGAAG 1 cut(s) 681
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 5 cut(s) 108, 204, 380, 614, 853
AfiI CCNNNNNNNGG 6 cut(s) 163, 167, 556, 562, 716, 903
AgeI ACCGGT 1 cut(s) 868
AgsI TTSAA 3 cut(s) 287, 706, 782
AjnI CCWGG 2 cut(s) 508, 555
AluBI AGCT 3 cut(s) 481, 538, 652
AluI AGCT 3 cut(s) 481, 538, 652
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 2 cut(s) 399, 819
AlwI GGATC 3 cut(s) 25, 282, 635
Ama87I CYCGRG 2 cut(s) 396, 946
Aor13HI TCCGGA 1 cut(s) 134
AoxI GGCC 2 cut(s) 492, 942
ApeKI GCWGC 5 cut(s) 125, 128, 478, 606, 839
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AsiGI ACCGGT 1 cut(s) 868
Asp700I GAANNNNTTC 1 cut(s) 329
AspA2I CCTAGG 2 cut(s) 161, 223
AspS9I GGNCC 1 cut(s) 719
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 5 cut(s) 224, 232, 239, 726, 857
AsuII TTCGAA 1 cut(s) 254
AvaI CYCGRG 2 cut(s) 396, 946
AvaII GGWCC 1 cut(s) 719
AvrII CCTAGG 2 cut(s) 161, 223
BanI GGYRCC 1 cut(s) 871
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 524
BbvCI CCTCAGC 1 cut(s) 963
BbvI GCAGC 5 cut(s) 112, 115, 490, 593, 826
BccI CCATC 1 cut(s) 329
BcgI CGANNNNNNTGC 2 cut(s) 780, 814
BciT130I CCWGG 2 cut(s) 510, 557
BclI TGATCA 1 cut(s) 814
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 399, 819
BfaI CTAG 5 cut(s) 15, 162, 224, 309, 443
BfmI CTRYAG 2 cut(s) 607, 636
BfuAI ACCTGC 1 cut(s) 600
BglI GCCNNNNNGGC 1 cut(s) 941
BisI GCNGC 7 cut(s) 126, 129, 141, 479, 607, 840, 897
BlnI CCTAGG 2 cut(s) 161, 223
BlpI GCTNAGC 1 cut(s) 534
BlsI GCNGC 7 cut(s) 127, 130, 142, 480, 608, 841, 898
Bme1390I CCNGG 3 cut(s) 272, 510, 557
Bme18I GGWCC 1 cut(s) 719
BmeT110I CYCGRG 2 cut(s) 396, 946
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 4 cut(s) 139, 720, 873, 895
BmrFI CCNGG 3 cut(s) 272, 510, 557
BmsI GCATC 1 cut(s) 750
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 963
Bpu1102I GCTNAGC 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 399
BsaJI CCNNGG 7 cut(s) 161, 223, 270, 489, 508, 528, 897
BsaWI WCCGGW 2 cut(s) 134, 868
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 610, 640
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 167, 556, 562, 716, 903
Bse118I RCCGGY 2 cut(s) 842, 868
Bse1I ACTGG 1 cut(s) 988
Bse3DI GCAATG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 705
BseAI TCCGGA 1 cut(s) 134
BseBI CCWGG 2 cut(s) 510, 557
BseDI CCNNGG 7 cut(s) 161, 223, 270, 489, 508, 528, 897
BseGI GGATG 2 cut(s) 10, 58
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 6 cut(s) 163, 167, 556, 562, 716, 903
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 3 cut(s) 425, 573, 954
BseNI ACTGG 1 cut(s) 988
BseRI GAGGAG 1 cut(s) 528
BseXI GCAGC 5 cut(s) 112, 115, 490, 593, 826
Bsh1236I CGCG 1 cut(s) 899
BshFI GGCC 2 cut(s) 494, 944
BshNI GGYRCC 1 cut(s) 871
BshTI ACCGGT 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 524
BsiHKCI CYCGRG 2 cut(s) 396, 946
BsiSI CCGG 4 cut(s) 135, 272, 843, 869
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 6 cut(s) 163, 167, 556, 562, 716, 903
BsmAI GTCTC 2 cut(s) 399, 819
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 2 cut(s) 494, 944
Bso31I GGTCTC 1 cut(s) 399
BsoBI CYCGRG 2 cut(s) 396, 946
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 524
Bsp13I TCCGGA 1 cut(s) 134
Bsp1407I TGTACA 2 cut(s) 106, 378
Bsp143I GATC 6 cut(s) 30, 274, 415, 640, 814, 911
Bsp1720I GCTNAGC 1 cut(s) 534
Bsp19I CCATGG 2 cut(s) 489, 528
BspACI CCGC 6 cut(s) 123, 141, 891, 897, 899, 907
BspANI GGCC 2 cut(s) 494, 944
BspCNI CTCAG 3 cut(s) 426, 574, 955
BspEI TCCGGA 1 cut(s) 134
BspFNI CGCG 1 cut(s) 899
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 4 cut(s) 139, 720, 873, 895
BspMAI CTGCAG 1 cut(s) 611
BspMI ACCTGC 1 cut(s) 600
BspPI GGATC 3 cut(s) 25, 282, 635
BspT104I TTCGAA 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 871
BspTNI GGTCTC 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 303
BsrFI RCCGGY 2 cut(s) 842, 868
BsrGI TGTACA 2 cut(s) 106, 378
BsrI ACTGG 1 cut(s) 988
BssAI RCCGGY 2 cut(s) 842, 868
BssECI CCNNGG 7 cut(s) 161, 223, 270, 489, 508, 528, 897
BssMI GATC 6 cut(s) 30, 274, 415, 640, 814, 911
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 4 cut(s) 161, 223, 489, 528
Bst2UI CCWGG 2 cut(s) 510, 557
Bst4CI ACNGT 3 cut(s) 148, 569, 727
Bst6I CTCTTC 1 cut(s) 965
BstACI GRCGYC 1 cut(s) 219
BstAUI TGTACA 2 cut(s) 106, 378
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 169, 540, 663
BstDEI CTNAG 5 cut(s) 434, 534, 582, 690, 963
BstDSI CCRYGG 3 cut(s) 489, 528, 897
BstF5I GGATG 2 cut(s) 10, 58
BstFNI CGCG 1 cut(s) 899
BstKTI GATC 6 cut(s) 33, 277, 418, 643, 817, 914
BstMAI GTCTC 2 cut(s) 399, 819
BstMBI GATC 6 cut(s) 30, 274, 415, 640, 814, 911
BstMWI GCNNNNNNNGC 5 cut(s) 137, 439, 539, 658, 941
BstNI CCWGG 2 cut(s) 510, 557
BstSCI CCNGG 3 cut(s) 270, 508, 555
BstSFI CTRYAG 2 cut(s) 607, 636
BstUI CGCG 1 cut(s) 899
BstV1I GCAGC 5 cut(s) 112, 115, 490, 593, 826
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 2 cut(s) 494, 944
BtgI CCRYGG 3 cut(s) 489, 528, 897
BtsCI GGATG 2 cut(s) 10, 58
BtsIMutI CAGTG 1 cut(s) 579
BveI ACCTGC 1 cut(s) 600
Cac8I GCNNGC 3 cut(s) 169, 540, 663
CciI TCATGA 1 cut(s) 19
Cfr10I RCCGGY 2 cut(s) 842, 868
Cfr13I GGNCC 1 cut(s) 719
Cfr42I CCGCGG 1 cut(s) 900
CseI GACGC 1 cut(s) 227
CsiI ACCWGGT 1 cut(s) 555
Csp6I GTAC 5 cut(s) 107, 203, 379, 613, 852
CspAI ACCGGT 1 cut(s) 868
CviAII CATG 9 cut(s) 20, 53, 85, 185, 193, 209, 490, 529, 818
CviQI GTAC 5 cut(s) 107, 203, 379, 613, 852
DdeI CTNAG 5 cut(s) 434, 534, 582, 690, 963
DpnI GATC 6 cut(s) 32, 276, 417, 642, 816, 913
DpnII GATC 6 cut(s) 30, 274, 415, 640, 814, 911
Eam1104I CTCTTC 1 cut(s) 965
EarI CTCTTC 1 cut(s) 965
EciI GGCGGA 2 cut(s) 906, 922
Eco130I CCWWGG 4 cut(s) 161, 223, 489, 528
Eco147I AGGCCT 1 cut(s) 944
Eco31I GGTCTC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 719
Eco57I CTGAAG 1 cut(s) 681
Eco88I CYCGRG 2 cut(s) 396, 946
EcoO109I RGGNCCY 1 cut(s) 719
EcoRII CCWGG 2 cut(s) 508, 555
EcoT14I CCWWGG 4 cut(s) 161, 223, 489, 528
ErhI CCWWGG 4 cut(s) 161, 223, 489, 528
FaeI CATG 9 cut(s) 23, 56, 88, 188, 196, 212, 493, 532, 821
FaqI GGGAC 1 cut(s) 364
FatI CATG 9 cut(s) 19, 52, 84, 184, 192, 208, 489, 528, 817
FbaI TGATCA 1 cut(s) 814
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 7 cut(s) 126, 129, 141, 479, 607, 840, 897
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 7 cut(s) 126, 129, 141, 479, 607, 840, 897
FspBI CTAG 5 cut(s) 15, 162, 224, 309, 443
GluI GCNGC 7 cut(s) 126, 129, 141, 479, 607, 840, 897
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 2 cut(s) 494, 944
HapII CCGG 4 cut(s) 135, 272, 843, 869
HgaI GACGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 9 cut(s) 23, 56, 88, 188, 196, 212, 493, 532, 821
HindIII AAGCTT 2 cut(s) 536, 650
HinfI GANTC 2 cut(s) 88, 677
HpaII CCGG 4 cut(s) 135, 272, 843, 869
HphI GGTGA 5 cut(s) 224, 232, 239, 726, 857
Hpy166II GTNNAC 4 cut(s) 38, 151, 318, 381
Hpy188I TCNGA 4 cut(s) 700, 802, 824, 833
Hpy188III TCNNGA 7 cut(s) 20, 135, 422, 563, 644, 882, 915
Hpy8I GTNNAC 4 cut(s) 38, 151, 318, 381
HpyAV CCTTC 5 cut(s) 432, 445, 667, 776, 946
HpyCH4III ACNGT 3 cut(s) 148, 569, 727
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 4 cut(s) 236, 345, 609, 791
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 439, 539, 658, 941
HpyF3I CTNAG 5 cut(s) 434, 534, 582, 690, 963
HpySE526I ACGT 1 cut(s) 357
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 9 cut(s) 23, 56, 88, 188, 196, 212, 493, 532, 821
Kpn2I TCCGGA 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 814
KspI CCGCGG 1 cut(s) 900
Kzo9I GATC 6 cut(s) 30, 274, 415, 640, 814, 911
LmnI GCTCC 4 cut(s) 137, 631, 670, 893
Lsp1109I GCAGC 5 cut(s) 112, 115, 490, 593, 826
LweI GCATC 1 cut(s) 750
MabI ACCWGGT 1 cut(s) 555
MaeI CTAG 5 cut(s) 15, 162, 224, 309, 443
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 3 cut(s) 115, 577, 732
MalI GATC 6 cut(s) 32, 276, 417, 642, 816, 913
MboI GATC 6 cut(s) 30, 274, 415, 640, 814, 911
MboII GAAGA 2 cut(s) 227, 982
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 2 cut(s) 291, 685
MlyI GAGTC 1 cut(s) 686
MmeI TCCRAC 1 cut(s) 856
MroI TCCGGA 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 329
MseI TTAA 1 cut(s) 994
MslI CAYNNNNRTG 2 cut(s) 388, 527
MspA1I CMGCKG 2 cut(s) 125, 899
MspI CCGG 4 cut(s) 135, 272, 843, 869
MspR9I CCNGG 3 cut(s) 272, 510, 557
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 2 cut(s) 510, 557
MvnI CGCG 1 cut(s) 899
MwoI GCNNNNNNNGC 5 cut(s) 137, 439, 539, 658, 941
NciI CCSGG 1 cut(s) 272
NcoI CCATGG 2 cut(s) 489, 528
NdeII GATC 6 cut(s) 30, 274, 415, 640, 814, 911
NlaIII CATG 9 cut(s) 23, 56, 88, 188, 196, 212, 493, 532, 821
NlaIV GGNNCC 4 cut(s) 139, 720, 873, 895
NmeAIII GCCGAG 1 cut(s) 568
NmuCI GTSAC 3 cut(s) 115, 577, 732
NspV TTCGAA 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 946
PagI TCATGA 1 cut(s) 19
PceI AGGCCT 1 cut(s) 944
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 88
PflMI CCANNNNNTGG 1 cut(s) 556
PinAI ACCGGT 1 cut(s) 868
PkrI GCNGC 7 cut(s) 127, 130, 142, 480, 608, 841, 898
PleI GAGTC 1 cut(s) 685
PpsI GAGTC 1 cut(s) 685
PpuMI RGGWCCY 1 cut(s) 719
Psp5II RGGWCCY 1 cut(s) 719
Psp6I CCWGG 2 cut(s) 508, 555
PspGI CCWGG 2 cut(s) 508, 555
PspN4I GGNNCC 4 cut(s) 139, 720, 873, 895
PspPI GGNCC 1 cut(s) 719
PspPPI RGGWCCY 1 cut(s) 719
PspXI VCTCGAGB 1 cut(s) 946
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 5 cut(s) 108, 204, 380, 614, 853
RsaNI GTAC 5 cut(s) 107, 203, 379, 613, 852
RseI CAYNNNNRTG 2 cut(s) 388, 527
SacII CCGCGG 1 cut(s) 900
SaqAI TTAA 1 cut(s) 994
SatI GCNGC 7 cut(s) 126, 129, 141, 479, 607, 840, 897
Sau3AI GATC 6 cut(s) 30, 274, 415, 640, 814, 911
Sau96I GGNCC 1 cut(s) 719
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 3 cut(s) 272, 510, 557
SduI GDGCHC 1 cut(s) 524
SexAI ACCWGGT 1 cut(s) 555
SfaNI GCATC 1 cut(s) 750
SfcI CTRYAG 2 cut(s) 607, 636
Sfr274I CTCGAG 1 cut(s) 946
Sfr303I CCGCGG 1 cut(s) 900
SfuI TTCGAA 1 cut(s) 254
SgrBI CCGCGG 1 cut(s) 900
SinI GGWCC 1 cut(s) 719
SlaI CTCGAG 1 cut(s) 946
SmiMI CAYNNNNRTG 2 cut(s) 388, 527
SmlI CTYRAG 2 cut(s) 69, 946
SmoI CTYRAG 2 cut(s) 69, 946
Sse9I AATT 2 cut(s) 291, 685
SseBI AGGCCT 1 cut(s) 944
SsiI CCGC 6 cut(s) 123, 141, 891, 897, 899, 907
SspMI CTAG 5 cut(s) 15, 162, 224, 309, 443
StuI AGGCCT 1 cut(s) 944
StyD4I CCNGG 3 cut(s) 270, 508, 555
StyI CCWWGG 4 cut(s) 161, 223, 489, 528
TaaI ACNGT 3 cut(s) 148, 569, 727
TaiI ACGT 1 cut(s) 360
TaqI TCGA 8 cut(s) 254, 323, 333, 810, 881, 931, 939, 947
TasI AATT 2 cut(s) 291, 685
TatI WGTACW 3 cut(s) 106, 378, 851
TauI GCSGC 2 cut(s) 143, 899
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 994
Tru9I TTAA 1 cut(s) 994
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 3 cut(s) 115, 577, 732
TseI GCWGC 5 cut(s) 125, 128, 478, 606, 839
Tsp45I GTSAC 3 cut(s) 115, 577, 732
TspDTI ATGAA 2 cut(s) 101, 879
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 946
XmaJI CCTAGG 2 cut(s) 161, 223
XmiI GTMKAC 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 5 cut(s) 15, 162, 224, 309, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.