Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000785.1

Orthogroup ID

OG0016839

Physical Location & Seq

Genomic Coordinates Reverse (-)

94908 .. 96012

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000785.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgctattcaatggcttgataagaatgagaaccaactcgctgaccaaatgtaaagagtataatatggatagctctgaagctgcaaggttggttagggataaggacggctttttgatcgatgagatcaagtctctactgaaacttatttgtagtaacacagatgttgttttccaaccaagggaatgcaacaaagtagcttatactcttgccaagttcatcttgaatgtgaatgaaattttgtattgtattgaatatgggcaagaatggcttatggaattgatgaatatcgattccgattttccggccatttccgagaggacccttcagaccttcccgccggagaggcacaccaacctcgtacgccgaccgggaggtctcatctccgtccccgggaggctctggaaggctcaggagacccgcctggagaactcccagtaccgtttgacgaagctgcttctgaatgtgacgctagagaggagcttggggcctgtacacgtgttgatgtcgccggagaacatggtcagtgatttgataaagtctgccgtggaaatatacgtgaaggagaagagaaggcctttggtgaaggagactgatccgcaccgtttcgagcttcactactcacaattcagtctagagagtaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.91

Weight (kDa)

8.3

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g00830
malus_domestica	MD04G1077900.v1.1
prunus_persica	Prupe.5G080800_v2.0.a1
pyrus_communis	pycom04g06980
rosa_chinensis	RchiOBHm_Chr7g0201091
rosa_laevigata	RLG00000003692
rosa_multiflora	Rmu_sc0000785.1_g000016
rosa_roxburghii	Rroxscaffold_3G00255520
rosa_samantha	Rh7AG187900 Rh7BG191400 Rh7CG198800 Rh7DG193600
rosa_wichuraiana	Rw7G016500 Rw7G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	372
AciI	CCGC	3 cut(s)	335, 418, 596
AclWI	GGATC	1 cut(s)	587
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	234
AcuI	CTGAAG	2 cut(s)	96, 308
AcvI	CACGTG	1 cut(s)	496
AfaI	GTAC	3 cut(s)	360, 437, 492
AfiI	CCNNNNNNNGG	2 cut(s)	178, 390
AflIII	ACRYGT	2 cut(s)	493, 495
AgsI	TTSAA	3 cut(s)	10, 223, 251
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	6 cut(s)	72, 80, 197, 451, 480, 610
AluI	AGCT	6 cut(s)	72, 80, 197, 451, 480, 610
Alw26I	GTCTC	4 cut(s)	135, 380, 407, 581
AlwI	GGATC	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	3 cut(s)	303, 485, 572
ApeKI	GCWGC	2 cut(s)	80, 451
ApoI	RAATTY	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	318, 485
AsuC2I	CCSGG	3 cut(s)	369, 390, 391
AsuHPI	GGTGA	1 cut(s)	592
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	318
BbrPI	CACGTG	1 cut(s)	496
BbvI	GCAGC	2 cut(s)	67, 438
BceAI	ACGGC	2 cut(s)	121, 527
BciT130I	CCWGG	1 cut(s)	422
BcnI	CCSGG	3 cut(s)	369, 390, 391
BcoDI	GTCTC	4 cut(s)	135, 380, 407, 581
BfaI	CTAG	2 cut(s)	470, 632
BglI	GCCNNNNNGGC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	81, 452
BlsI	GCNGC	2 cut(s)	82, 453
Bme1390I	CCNGG	4 cut(s)	369, 390, 391, 422
Bme18I	GGWCC	1 cut(s)	318
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	318, 485
BmiI	GGNNCC	2 cut(s)	320, 486
BmrFI	CCNGG	4 cut(s)	369, 390, 391, 422
BmrI	ACTGGG	1 cut(s)	427
BmuI	ACTGGG	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	408
BpuMI	CCSGG	3 cut(s)	369, 390, 391
Bsa29I	ATCGAT	2 cut(s)	117, 288
BsaAI	YACGTR	2 cut(s)	496, 556
BsaBI	GATNNNNATC	1 cut(s)	284
BsaI	GGTCTC	2 cut(s)	380, 407
BsaJI	CCNNGG	4 cut(s)	176, 388, 389, 543
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 390
Bse1I	ACTGG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	422
BseCI	ATCGAT	2 cut(s)	117, 288
BseDI	CCNNGG	4 cut(s)	176, 388, 389, 543
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	2 cut(s)	178, 390
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	490
BseXI	GCAGC	2 cut(s)	67, 438
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	3 cut(s)	305, 487, 574
BshVI	ATCGAT	2 cut(s)	117, 288
BsiEI	CGRYCG	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	5 cut(s)	302, 338, 368, 390, 509
BsiWI	CGTACG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	178, 390
BsmAI	GTCTC	4 cut(s)	135, 380, 407, 581
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	305, 487, 574
Bso31I	GGTCTC	2 cut(s)	380, 407
BsoBI	CYCGRG	1 cut(s)	389
Bsp1407I	TGTACA	1 cut(s)	490
Bsp143I	GATC	3 cut(s)	114, 123, 592
BspACI	CCGC	3 cut(s)	335, 418, 596
BspANI	GGCC	3 cut(s)	305, 487, 574
BspCNI	CTCAG	1 cut(s)	421
BspDI	ATCGAT	2 cut(s)	117, 288
BspLI	GGNNCC	2 cut(s)	320, 486
BspPI	GGATC	1 cut(s)	587
BspTNI	GGTCTC	2 cut(s)	380, 407
BsrGI	TGTACA	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	4 cut(s)	176, 388, 389, 543
BssMI	GATC	3 cut(s)	114, 123, 592
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	440, 602
Bst6I	CTCTTC	1 cut(s)	560
BstAUI	TGTACA	1 cut(s)	490
BstBAI	YACGTR	2 cut(s)	496, 556
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	543
BstKTI	GATC	3 cut(s)	117, 126, 595
BstMAI	GTCTC	4 cut(s)	135, 380, 407, 581
BstMBI	GATC	3 cut(s)	114, 123, 592
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 343
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	4 cut(s)	367, 388, 389, 420
BstV1I	GCAGC	2 cut(s)	67, 438
Bsu15I	ATCGAT	2 cut(s)	117, 288
BsuRI	GGCC	3 cut(s)	305, 487, 574
BsuTUI	ATCGAT	2 cut(s)	117, 288
BtgI	CCRYGG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	318, 485
Cfr9I	CCCGGG	1 cut(s)	389
ClaI	ATCGAT	2 cut(s)	117, 288
CseI	GACGC	1 cut(s)	475
Csp6I	GTAC	3 cut(s)	359, 436, 491
CviAII	CATG	1 cut(s)	517
CviQI	GTAC	3 cut(s)	359, 436, 491
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	3 cut(s)	116, 125, 594
DpnII	GATC	3 cut(s)	114, 123, 592
DrdI	GACNNNNNNGTC	1 cut(s)	372
DseDI	GACNNNNNNGTC	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	176
Eco147I	AGGCCT	1 cut(s)	574
Eco31I	GGTCTC	2 cut(s)	380, 407
Eco47I	GGWCC	1 cut(s)	318
Eco57I	CTGAAG	2 cut(s)	96, 308
Eco72I	CACGTG	1 cut(s)	496
Eco88I	CYCGRG	1 cut(s)	389
EcoO109I	RGGNCCY	2 cut(s)	318, 485
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	1 cut(s)	520
FaiI	YATR	7 cut(s)	60, 65, 201, 255, 272, 518, 553
FalI	AAGNNNNNCTT	6 cut(s)	92, 124, 203, 235, 252, 284
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	1 cut(s)	516
FauI	CCCGC	2 cut(s)	342, 425
Fnu4HI	GCNGC	2 cut(s)	81, 452
Fsp4HI	GCNGC	2 cut(s)	81, 452
FspBI	CTAG	2 cut(s)	470, 632
GluI	GCNGC	2 cut(s)	81, 452
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	3 cut(s)	305, 487, 574
HapII	CCGG	5 cut(s)	302, 338, 368, 390, 509
HgaI	GACGC	1 cut(s)	475
Hin1II	CATG	1 cut(s)	520
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	5 cut(s)	302, 338, 368, 390, 509
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	5 cut(s)	76, 295, 313, 327, 459
Hpy188III	TCNNGA	4 cut(s)	220, 400, 410, 632
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	6 cut(s)	332, 340, 397, 553, 564, 577
HpyCH4III	ACNGT	2 cut(s)	440, 602
HpyCH4IV	ACGT	2 cut(s)	495, 555
HpyCH4V	TGCA	2 cut(s)	83, 186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 343
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	2 cut(s)	495, 555
Hsp92II	CATG	1 cut(s)	520
Kzo9I	GATC	3 cut(s)	114, 123, 592
LmnI	GCTCC	1 cut(s)	477
Lsp1109I	GCAGC	2 cut(s)	67, 438
MaeI	CTAG	2 cut(s)	470, 632
MaeII	ACGT	2 cut(s)	495, 555
MaeIII	GTNAC	2 cut(s)	152, 463
MalI	GATC	3 cut(s)	116, 125, 594
MboI	GATC	3 cut(s)	114, 123, 592
MboII	GAAGA	1 cut(s)	577
MluCI	AATT	3 cut(s)	234, 275, 623
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	6 cut(s)	309, 336, 365, 365, 387, 468
MspI	CCGG	5 cut(s)	302, 338, 368, 390, 509
MspR9I	CCNGG	4 cut(s)	369, 390, 391, 422
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	265, 343
NciI	CCSGG	3 cut(s)	369, 390, 391
NdeII	GATC	3 cut(s)	114, 123, 592
NlaIII	CATG	1 cut(s)	520
NlaIV	GGNNCC	2 cut(s)	320, 486
NmuCI	GTSAC	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	574
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	290
Pfl23II	CGTACG	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	82, 453
PmaCI	CACGTG	1 cut(s)	496
PmlI	CACGTG	1 cut(s)	496
Ppu21I	YACGTR	2 cut(s)	496, 556
PpuMI	RGGWCCY	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	420
PspCI	CACGTG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	420
PspLI	CGTACG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	320, 486
PspPI	GGNCC	2 cut(s)	318, 485
PspPPI	RGGWCCY	1 cut(s)	318
PsrI	GAACNNNNNNTAC	2 cut(s)	419, 451
RsaI	GTAC	3 cut(s)	360, 437, 492
RsaNI	GTAC	3 cut(s)	359, 436, 491
SatI	GCNGC	2 cut(s)	81, 452
Sau3AI	GATC	3 cut(s)	114, 123, 592
Sau96I	GGNCC	2 cut(s)	318, 485
ScrFI	CCNGG	4 cut(s)	369, 390, 391, 422
SinI	GGWCC	1 cut(s)	318
SmaI	CCCGGG	1 cut(s)	391
Sse9I	AATT	3 cut(s)	234, 275, 623
SseBI	AGGCCT	1 cut(s)	574
SsiI	CCGC	3 cut(s)	335, 418, 596
SspMI	CTAG	2 cut(s)	470, 632
StuI	AGGCCT	1 cut(s)	574
StyD4I	CCNGG	4 cut(s)	367, 388, 389, 420
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	440, 602
TaiI	ACGT	2 cut(s)	498, 558
TaqI	TCGA	3 cut(s)	117, 288, 606
TasI	AATT	3 cut(s)	234, 275, 623
TatI	WGTACW	1 cut(s)	490
TfiI	GAWTC	1 cut(s)	290
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	80, 451
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	3 cut(s)	205, 246, 296
TspGWI	ACGGA	1 cut(s)	373
TspMI	CCCGGG	1 cut(s)	389
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	1 cut(s)	234
XbaI	TCTAGA	1 cut(s)	631
XmaI	CCCGGG	1 cut(s)	389
XspI	CTAG	2 cut(s)	470, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.