Rmu_sc0000785.1_g000016

endonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000785.1
OG0016839
Physical Location & Seq
Reverse (-)
94908 .. 96012
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
atgctattcaatggcttgataagaatgagaaccaactcgctgaccaaatgtaaagagtataatatggatagctctgaagctgcaaggttggttagggataaggacggctttttgatcgatgagatcaagtctctactgaaacttatttgtagtaacacagatgttgttttccaaccaagggaatgcaacaaagtagcttatactcttgccaagttcatcttgaatgtgaatgaaattttgtattgtattgaatatgggcaagaatggcttatggaattgatgaatatcgattccgattttccggccatttccgagaggacccttcagaccttcccgccggagaggcacaccaacctcgtacgccgaccgggaggtctcatctccgtccccgggaggctctggaaggctcaggagacccgcctggagaactcccagtaccgtttgacgaagctgcttctgaatgtgacgctagagaggagcttggggcctgtacacgtgttgatgtcgccggagaacatggtcagtgatttgataaagtctgccgtggaaatatacgtgaaggagaagagaaggcctttggtgaaggagactgatccgcaccgtttcgagcttcactactcacaattcagtctagagagtaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.91

Weight (kDa)

8.3

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7054 PF23156 148 - 213 1.2e-26 Domain of unknown function (DUF7054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016839)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g00830
malus_domestica MD04G1077900.v1.1
prunus_persica Prupe.5G080800_v2.0.a1
pyrus_communis pycom04g06980
rosa_chinensis RchiOBHm_Chr7g0201091
rosa_laevigata RLG00000003692
rosa_multiflora Rmu_sc0000785.1_g000016
rosa_roxburghii Rroxscaffold_3G00255520
rosa_samantha Rh7AG187900 Rh7BG191400 Rh7CG198800 Rh7DG193600
rosa_wichuraiana Rw7G016500 Rw7G016570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 372
AciI CCGC 3 cut(s) 335, 418, 596
AclWI GGATC 1 cut(s) 587
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 2 cut(s) 96, 308
AcvI CACGTG 1 cut(s) 496
AfaI GTAC 3 cut(s) 360, 437, 492
AfiI CCNNNNNNNGG 2 cut(s) 178, 390
AflIII ACRYGT 2 cut(s) 493, 495
AgsI TTSAA 3 cut(s) 10, 223, 251
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 6 cut(s) 72, 80, 197, 451, 480, 610
AluI AGCT 6 cut(s) 72, 80, 197, 451, 480, 610
Alw26I GTCTC 4 cut(s) 135, 380, 407, 581
AlwI GGATC 1 cut(s) 587
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 3 cut(s) 303, 485, 572
ApeKI GCWGC 2 cut(s) 80, 451
ApoI RAATTY 1 cut(s) 234
AspS9I GGNCC 2 cut(s) 318, 485
AsuC2I CCSGG 3 cut(s) 369, 390, 391
AsuHPI GGTGA 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 1 cut(s) 318
BbrPI CACGTG 1 cut(s) 496
BbvI GCAGC 2 cut(s) 67, 438
BceAI ACGGC 2 cut(s) 121, 527
BciT130I CCWGG 1 cut(s) 422
BcnI CCSGG 3 cut(s) 369, 390, 391
BcoDI GTCTC 4 cut(s) 135, 380, 407, 581
BfaI CTAG 2 cut(s) 470, 632
BglI GCCNNNNNGGC 1 cut(s) 343
BisI GCNGC 2 cut(s) 81, 452
BlsI GCNGC 2 cut(s) 82, 453
Bme1390I CCNGG 4 cut(s) 369, 390, 391, 422
Bme18I GGWCC 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 2 cut(s) 318, 485
BmiI GGNNCC 2 cut(s) 320, 486
BmrFI CCNGG 4 cut(s) 369, 390, 391, 422
BmrI ACTGGG 1 cut(s) 427
BmuI ACTGGG 1 cut(s) 427
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 408
BpuMI CCSGG 3 cut(s) 369, 390, 391
Bsa29I ATCGAT 2 cut(s) 117, 288
BsaAI YACGTR 2 cut(s) 496, 556
BsaBI GATNNNNATC 1 cut(s) 284
BsaI GGTCTC 2 cut(s) 380, 407
BsaJI CCNNGG 4 cut(s) 176, 388, 389, 543
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 390
Bse1I ACTGG 1 cut(s) 433
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 422
BseCI ATCGAT 2 cut(s) 117, 288
BseDI CCNNGG 4 cut(s) 176, 388, 389, 543
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 178, 390
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 490
BseXI GCAGC 2 cut(s) 67, 438
Bsh1285I CGRYCG 1 cut(s) 368
BshFI GGCC 3 cut(s) 305, 487, 574
BshVI ATCGAT 2 cut(s) 117, 288
BsiEI CGRYCG 1 cut(s) 368
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 5 cut(s) 302, 338, 368, 390, 509
BsiWI CGTACG 1 cut(s) 358
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 178, 390
BsmAI GTCTC 4 cut(s) 135, 380, 407, 581
BsmFI GGGAC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 3 cut(s) 305, 487, 574
Bso31I GGTCTC 2 cut(s) 380, 407
BsoBI CYCGRG 1 cut(s) 389
Bsp1407I TGTACA 1 cut(s) 490
Bsp143I GATC 3 cut(s) 114, 123, 592
BspACI CCGC 3 cut(s) 335, 418, 596
BspANI GGCC 3 cut(s) 305, 487, 574
BspCNI CTCAG 1 cut(s) 421
BspDI ATCGAT 2 cut(s) 117, 288
BspLI GGNNCC 2 cut(s) 320, 486
BspPI GGATC 1 cut(s) 587
BspTNI GGTCTC 2 cut(s) 380, 407
BsrGI TGTACA 1 cut(s) 490
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 4 cut(s) 176, 388, 389, 543
BssMI GATC 3 cut(s) 114, 123, 592
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 2 cut(s) 440, 602
Bst6I CTCTTC 1 cut(s) 560
BstAUI TGTACA 1 cut(s) 490
BstBAI YACGTR 2 cut(s) 496, 556
BstDEI CTNAG 1 cut(s) 408
BstDSI CCRYGG 1 cut(s) 543
BstKTI GATC 3 cut(s) 117, 126, 595
BstMAI GTCTC 4 cut(s) 135, 380, 407, 581
BstMBI GATC 3 cut(s) 114, 123, 592
BstMCI CGRYCG 1 cut(s) 368
BstMWI GCNNNNNNNGC 2 cut(s) 265, 343
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 4 cut(s) 367, 388, 389, 420
BstV1I GCAGC 2 cut(s) 67, 438
Bsu15I ATCGAT 2 cut(s) 117, 288
BsuRI GGCC 3 cut(s) 305, 487, 574
BsuTUI ATCGAT 2 cut(s) 117, 288
BtgI CCRYGG 1 cut(s) 543
BtsIMutI CAGTG 1 cut(s) 529
Cfr13I GGNCC 2 cut(s) 318, 485
Cfr9I CCCGGG 1 cut(s) 389
ClaI ATCGAT 2 cut(s) 117, 288
CseI GACGC 1 cut(s) 475
Csp6I GTAC 3 cut(s) 359, 436, 491
CviAII CATG 1 cut(s) 517
CviQI GTAC 3 cut(s) 359, 436, 491
DdeI CTNAG 1 cut(s) 408
DpnI GATC 3 cut(s) 116, 125, 594
DpnII GATC 3 cut(s) 114, 123, 592
DrdI GACNNNNNNGTC 1 cut(s) 372
DseDI GACNNNNNNGTC 1 cut(s) 372
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Eco130I CCWWGG 1 cut(s) 176
Eco147I AGGCCT 1 cut(s) 574
Eco31I GGTCTC 2 cut(s) 380, 407
Eco47I GGWCC 1 cut(s) 318
Eco57I CTGAAG 2 cut(s) 96, 308
Eco72I CACGTG 1 cut(s) 496
Eco88I CYCGRG 1 cut(s) 389
EcoO109I RGGNCCY 2 cut(s) 318, 485
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 1 cut(s) 520
FaiI YATR 7 cut(s) 60, 65, 201, 255, 272, 518, 553
FalI AAGNNNNNCTT 6 cut(s) 92, 124, 203, 235, 252, 284
FaqI GGGAC 1 cut(s) 371
FatI CATG 1 cut(s) 516
FauI CCCGC 2 cut(s) 342, 425
Fnu4HI GCNGC 2 cut(s) 81, 452
Fsp4HI GCNGC 2 cut(s) 81, 452
FspBI CTAG 2 cut(s) 470, 632
GluI GCNGC 2 cut(s) 81, 452
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 3 cut(s) 305, 487, 574
HapII CCGG 5 cut(s) 302, 338, 368, 390, 509
HgaI GACGC 1 cut(s) 475
Hin1II CATG 1 cut(s) 520
HinfI GANTC 1 cut(s) 290
HpaII CCGG 5 cut(s) 302, 338, 368, 390, 509
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 5 cut(s) 76, 295, 313, 327, 459
Hpy188III TCNNGA 4 cut(s) 220, 400, 410, 632
Hpy8I GTNNAC 1 cut(s) 493
HpyAV CCTTC 6 cut(s) 332, 340, 397, 553, 564, 577
HpyCH4III ACNGT 2 cut(s) 440, 602
HpyCH4IV ACGT 2 cut(s) 495, 555
HpyCH4V TGCA 2 cut(s) 83, 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 343
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 2 cut(s) 495, 555
Hsp92II CATG 1 cut(s) 520
Kzo9I GATC 3 cut(s) 114, 123, 592
LmnI GCTCC 1 cut(s) 477
Lsp1109I GCAGC 2 cut(s) 67, 438
MaeI CTAG 2 cut(s) 470, 632
MaeII ACGT 2 cut(s) 495, 555
MaeIII GTNAC 2 cut(s) 152, 463
MalI GATC 3 cut(s) 116, 125, 594
MboI GATC 3 cut(s) 114, 123, 592
MboII GAAGA 1 cut(s) 577
MluCI AATT 3 cut(s) 234, 275, 623
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 6 cut(s) 309, 336, 365, 365, 387, 468
MspI CCGG 5 cut(s) 302, 338, 368, 390, 509
MspR9I CCNGG 4 cut(s) 369, 390, 391, 422
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 2 cut(s) 265, 343
NciI CCSGG 3 cut(s) 369, 390, 391
NdeII GATC 3 cut(s) 114, 123, 592
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 2 cut(s) 320, 486
NmuCI GTSAC 1 cut(s) 463
PceI AGGCCT 1 cut(s) 574
PctI GAATGC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 290
Pfl23II CGTACG 1 cut(s) 358
PkrI GCNGC 2 cut(s) 82, 453
PmaCI CACGTG 1 cut(s) 496
PmlI CACGTG 1 cut(s) 496
Ppu21I YACGTR 2 cut(s) 496, 556
PpuMI RGGWCCY 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 420
PspCI CACGTG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 420
PspLI CGTACG 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 320, 486
PspPI GGNCC 2 cut(s) 318, 485
PspPPI RGGWCCY 1 cut(s) 318
PsrI GAACNNNNNNTAC 2 cut(s) 419, 451
RsaI GTAC 3 cut(s) 360, 437, 492
RsaNI GTAC 3 cut(s) 359, 436, 491
SatI GCNGC 2 cut(s) 81, 452
Sau3AI GATC 3 cut(s) 114, 123, 592
Sau96I GGNCC 2 cut(s) 318, 485
ScrFI CCNGG 4 cut(s) 369, 390, 391, 422
SinI GGWCC 1 cut(s) 318
SmaI CCCGGG 1 cut(s) 391
Sse9I AATT 3 cut(s) 234, 275, 623
SseBI AGGCCT 1 cut(s) 574
SsiI CCGC 3 cut(s) 335, 418, 596
SspMI CTAG 2 cut(s) 470, 632
StuI AGGCCT 1 cut(s) 574
StyD4I CCNGG 4 cut(s) 367, 388, 389, 420
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 440, 602
TaiI ACGT 2 cut(s) 498, 558
TaqI TCGA 3 cut(s) 117, 288, 606
TasI AATT 3 cut(s) 234, 275, 623
TatI WGTACW 1 cut(s) 490
TfiI GAWTC 1 cut(s) 290
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 2 cut(s) 80, 451
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 3 cut(s) 205, 246, 296
TspGWI ACGGA 1 cut(s) 373
TspMI CCCGGG 1 cut(s) 389
TspRI CASTG 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 1 cut(s) 234
XbaI TCTAGA 1 cut(s) 631
XmaI CCCGGG 1 cut(s) 389
XspI CTAG 2 cut(s) 470, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.