Rmu_sc0000791.1_g000018

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000791.1
OG0015543
Physical Location & Seq
Forward (+)
61879 .. 63929
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 963 bp
atggctgagacgattagtccagtgcttatcaatcataggccttttgaacccaacagtaccatcatcaactcccatcattcatccttcctggaccaaaaccctaatgtcgacaccattgtggctgttgatgatatagaaatccccacagttgatttctctgtgctattctctgatgatcttgaaaaaagatccaaggccattgaaaacattggacatgtctgcgaggactttggcttcttctatgaccgaaagcagtatgagaaaaagaacccaacagatagaatccgatggggacttcgatcttctcctgcggagaatagagaatatcttaaggtgattgcacatcctgagtaccactgtcctgctaaaccagctggtttcagtgaggctatggaagaatatttcaaaagactgagagttatagtagatggtttgggaaaggcattttcaaaagccatgggatttgaagaatgctacatagaaaaagcttttaagcttgactcggggttcgatatgtctgcgatgaacttatacccacccaatttcagatcaaaaggttccattggtgtgcctaaccatactgatcctggcttctttgtttcactcattcaagacgtgaatagtggactgcaaatactatcccataagggagactggatcaatgttaacatgccccctaatgccattttcataaaccttggggatcatcttgagatcttaacaaatgggaagtacaagagccatgttcatcgtgttgttgtggacaacaacaaagtgaagaggatctcagtggccacactccatggaccttcgttggactcgcttgtgtctccggcaccagagtttgttgatgagtctcacccacctatatatcgtggaatgacttacaaacaatctttggaggttaacggcggtgacgagatagatgttcaatcgagtcttgaacaaattcggattgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

320

Amino Acids

36.11

Weight (kDa)

5.55

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 172 - 269 2.9e-23 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015543)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g15310 FvH4_2g15312
malus_domestica MD05G1008900.v1.1
prunus_persica Prupe.8G011000_v2.0.a1 Prupe.8G011200_v2.0.a1
pyrus_communis pycom05g00460
rosa_chinensis RchiOBHm_Chr6g0278051
rosa_laevigata RLG00000013242
rosa_multiflora Rmu_sc0000791.1_g000018
rosa_roxburghii Rroxscaffold_7G00190560
rosa_rugosa Rorug06G0114500
rosa_samantha Rh6AG224300 Rh6BG228300 Rh6CG230700 Rh6DG221800
rosa_wichuraiana Rw6G019580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 835
AccI GTMKAC 1 cut(s) 108
AciI CCGC 2 cut(s) 311, 912
AclWI GGATC 5 cut(s) 183, 578, 665, 711, 791
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 1 cut(s) 948
AfaI GTAC 3 cut(s) 58, 353, 734
AflII CTTAAG 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 214
AhdI GACNNNNNGTC 1 cut(s) 15
AjiI CACGTC 1 cut(s) 616
AjnI CCWGG 2 cut(s) 87, 586
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 3 cut(s) 374, 488, 496
AluI AGCT 3 cut(s) 374, 488, 496
Alw26I GTCTC 4 cut(s) 2, 645, 834, 861
AlwI GGATC 5 cut(s) 183, 578, 665, 711, 791
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 3 cut(s) 38, 195, 792
ApoI RAATTY 1 cut(s) 948
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
Asp700I GAANNNNTTC 1 cut(s) 948
AspS9I GGNCC 2 cut(s) 91, 806
AsuHPI GGTGA 3 cut(s) 346, 851, 926
AvaI CYCGRG 1 cut(s) 502
AvaII GGWCC 2 cut(s) 91, 806
BalI TGGCCA 1 cut(s) 794
BanI GGYRCC 1 cut(s) 835
BccI CCATC 4 cut(s) 68, 81, 282, 422
BceAI ACGGC 1 cut(s) 925
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BciT130I CCWGG 2 cut(s) 89, 588
BcoDI GTCTC 4 cut(s) 2, 645, 834, 861
BfrI CTTAAG 1 cut(s) 329
BglII AGATCT 1 cut(s) 714
Bme1390I CCNGG 2 cut(s) 89, 588
Bme18I GGWCC 2 cut(s) 91, 806
BmeRI GACNNNNNGTC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 502
BmgBI CACGTC 1 cut(s) 616
BmgT120I GGNCC 2 cut(s) 91, 806
BmiI GGNNCC 2 cut(s) 559, 837
BmrFI CCNGG 2 cut(s) 89, 588
BpuEI CTTGAG 1 cut(s) 731
BsaJI CCNNGG 4 cut(s) 192, 456, 697, 802
Bse1I ACTGG 2 cut(s) 20, 659
BseBI CCWGG 2 cut(s) 89, 588
BseDI CCNNGG 4 cut(s) 192, 456, 697, 802
BseGI GGATG 2 cut(s) 80, 343
BseMII CTCAG 3 cut(s) 339, 404, 801
BseNI ACTGG 2 cut(s) 20, 659
BshFI GGCC 3 cut(s) 40, 197, 794
BshNI GGYRCC 1 cut(s) 835
BsiHKCI CYCGRG 1 cut(s) 502
BsiSI CCGG 1 cut(s) 833
BslFI GGGAC 1 cut(s) 306
BsmAI GTCTC 4 cut(s) 2, 645, 834, 861
BsmBI CGTCTC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 3 cut(s) 40, 197, 794
BsoBI CYCGRG 1 cut(s) 502
Bsp143I GATC 9 cut(s) 175, 188, 299, 548, 583, 657, 703, 714, 783
Bsp19I CCATGG 2 cut(s) 456, 802
BspACI CCGC 2 cut(s) 311, 912
BspANI GGCC 3 cut(s) 40, 197, 794
BspCNI CTCAG 3 cut(s) 340, 405, 800
BspLI GGNNCC 2 cut(s) 559, 837
BspPI GGATC 5 cut(s) 183, 578, 665, 711, 791
BspT107I GGYRCC 1 cut(s) 835
BspTI CTTAAG 1 cut(s) 329
BsrI ACTGG 2 cut(s) 20, 659
BssECI CCNNGG 4 cut(s) 192, 456, 697, 802
BssMI GATC 9 cut(s) 175, 188, 299, 548, 583, 657, 703, 714, 783
BssT1I CCWWGG 4 cut(s) 192, 456, 697, 802
Bst2UI CCWGG 2 cut(s) 89, 588
Bst4CI ACNGT 3 cut(s) 56, 148, 359
Bst6I CTCTTC 1 cut(s) 773
BstAFI CTTAAG 1 cut(s) 329
BstDEI CTNAG 4 cut(s) 6, 348, 413, 787
BstDSI CCRYGG 2 cut(s) 456, 802
BstF5I GGATG 2 cut(s) 80, 343
BstKTI GATC 9 cut(s) 178, 191, 302, 551, 586, 660, 706, 717, 786
BstMAI GTCTC 4 cut(s) 2, 645, 834, 861
BstMBI GATC 9 cut(s) 175, 188, 299, 548, 583, 657, 703, 714, 783
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 2 cut(s) 89, 588
BstNSI RCATGY 2 cut(s) 218, 673
BstSCI CCNGG 2 cut(s) 87, 586
BstX2I RGATCY 3 cut(s) 188, 714, 783
BstYI RGATCY 3 cut(s) 188, 714, 783
BsuRI GGCC 3 cut(s) 40, 197, 794
BtgI CCRYGG 2 cut(s) 456, 802
BtgZI GCGATG 1 cut(s) 536
BtrI CACGTC 1 cut(s) 616
BtsCI GGATG 2 cut(s) 80, 343
BtsIMutI CAGTG 4 cut(s) 27, 355, 388, 795
Cfr13I GGNCC 2 cut(s) 91, 806
Csp6I GTAC 3 cut(s) 57, 352, 733
CviAII CATG 5 cut(s) 215, 457, 670, 743, 803
CviQI GTAC 3 cut(s) 57, 352, 733
DdeI CTNAG 4 cut(s) 6, 348, 413, 787
DpnI GATC 9 cut(s) 177, 190, 301, 550, 585, 659, 705, 716, 785
DpnII GATC 9 cut(s) 175, 188, 299, 548, 583, 657, 703, 714, 783
DriI GACNNNNNGTC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 792
Eam1104I CTCTTC 1 cut(s) 773
Eam1105I GACNNNNNGTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 773
Eco130I CCWWGG 4 cut(s) 192, 456, 697, 802
Eco147I AGGCCT 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 91, 806
Eco88I CYCGRG 1 cut(s) 502
EcoRII CCWGG 2 cut(s) 87, 586
EcoT14I CCWWGG 4 cut(s) 192, 456, 697, 802
ErhI CCWWGG 4 cut(s) 192, 456, 697, 802
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 5 cut(s) 218, 460, 673, 746, 806
FaqI GGGAC 1 cut(s) 306
FatI CATG 5 cut(s) 214, 456, 669, 742, 802
FblI GTMKAC 1 cut(s) 108
FokI GGATG 2 cut(s) 67, 330
HaeIII GGCC 3 cut(s) 40, 197, 794
HapII CCGG 1 cut(s) 833
Hin1II CATG 5 cut(s) 218, 460, 673, 746, 806
HincII GTYRAC 3 cut(s) 109, 667, 907
HindII GTYRAC 3 cut(s) 109, 667, 907
HindIII AAGCTT 2 cut(s) 486, 494
HinfI GANTC 5 cut(s) 282, 500, 818, 854, 937
HpaI GTTAAC 2 cut(s) 667, 907
HpaII CCGG 1 cut(s) 833
HphI GGTGA 3 cut(s) 346, 851, 926
Hpy166II GTNNAC 5 cut(s) 109, 626, 667, 763, 907
Hpy188I TCNGA 4 cut(s) 172, 287, 548, 954
Hpy188III TCNNGA 5 cut(s) 179, 347, 611, 710, 941
Hpy8I GTNNAC 5 cut(s) 109, 626, 667, 763, 907
HpyAV CCTTC 2 cut(s) 94, 819
HpyCH4III ACNGT 3 cut(s) 56, 148, 359
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 2 cut(s) 341, 631
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 4 cut(s) 6, 348, 413, 787
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 5 cut(s) 218, 460, 673, 746, 806
KspAI GTTAAC 2 cut(s) 667, 907
Kzo9I GATC 9 cut(s) 175, 188, 299, 548, 583, 657, 703, 714, 783
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 1 cut(s) 914
MalI GATC 9 cut(s) 177, 190, 301, 550, 585, 659, 705, 716, 785
MboI GATC 9 cut(s) 175, 188, 299, 548, 583, 657, 703, 714, 783
MboII GAAGA 5 cut(s) 229, 294, 407, 479, 790
MflI RGATCY 3 cut(s) 188, 714, 783
MlsI TGGCCA 1 cut(s) 794
MluCI AATT 2 cut(s) 541, 948
MluNI TGGCCA 1 cut(s) 794
MlyI GAGTC 4 cut(s) 494, 812, 863, 946
MmeI TCCRAC 1 cut(s) 795
MnlI CCTC 4 cut(s) 217, 379, 774, 895
Mox20I TGGCCA 1 cut(s) 794
MroXI GAANNNNTTC 1 cut(s) 948
MscI TGGCCA 1 cut(s) 794
MseI TTAA 5 cut(s) 330, 492, 666, 719, 906
MslI CAYNNNNRTG 2 cut(s) 116, 566
Msp20I TGGCCA 1 cut(s) 794
MspA1I CMGCKG 1 cut(s) 374
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 1 cut(s) 833
MspR9I CCNGG 2 cut(s) 89, 588
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 2 cut(s) 89, 588
MwoI GCNNNNNNNGC 1 cut(s) 371
NcoI CCATGG 2 cut(s) 456, 802
NdeII GATC 9 cut(s) 175, 188, 299, 548, 583, 657, 703, 714, 783
NlaIII CATG 5 cut(s) 218, 460, 673, 746, 806
NlaIV GGNNCC 2 cut(s) 559, 837
NmuCI GTSAC 1 cut(s) 914
NspI RCATGY 2 cut(s) 218, 673
OliI CACNNNNGTG 1 cut(s) 116
PceI AGGCCT 1 cut(s) 40
PciI ACATGT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 915
PctI GAATGC 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 1 cut(s) 282
PfoI TCCNGGA 1 cut(s) 87
PleI GAGTC 4 cut(s) 494, 812, 862, 945
PpsI GAGTC 4 cut(s) 494, 812, 862, 945
PscI ACATGT 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 87, 586
PspGI CCWGG 2 cut(s) 87, 586
PspN4I GGNNCC 2 cut(s) 559, 837
PspPI GGNCC 2 cut(s) 91, 806
PsuI RGATCY 3 cut(s) 188, 714, 783
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 3 cut(s) 58, 353, 734
RsaNI GTAC 3 cut(s) 57, 352, 733
RseI CAYNNNNRTG 2 cut(s) 116, 566
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 5 cut(s) 330, 492, 666, 719, 906
Sau3AI GATC 9 cut(s) 175, 188, 299, 548, 583, 657, 703, 714, 783
Sau96I GGNCC 2 cut(s) 91, 806
SchI GAGTC 4 cut(s) 494, 812, 863, 946
ScrFI CCNGG 2 cut(s) 89, 588
SinI GGWCC 2 cut(s) 91, 806
SmiMI CAYNNNNRTG 2 cut(s) 116, 566
SmlI CTYRAG 2 cut(s) 329, 710
SmoI CTYRAG 2 cut(s) 329, 710
Sse9I AATT 2 cut(s) 541, 948
SseBI AGGCCT 1 cut(s) 40
SsiI CCGC 2 cut(s) 311, 912
SspI AATATT 1 cut(s) 401
StuI AGGCCT 1 cut(s) 40
StyD4I CCNGG 2 cut(s) 87, 586
StyI CCWWGG 4 cut(s) 192, 456, 697, 802
TaaI ACNGT 3 cut(s) 56, 148, 359
TaiI ACGT 1 cut(s) 618
TaqI TCGA 4 cut(s) 108, 298, 510, 935
TaqII GACCGA 1 cut(s) 261
TasI AATT 2 cut(s) 541, 948
TatI WGTACW 1 cut(s) 732
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 5 cut(s) 330, 492, 666, 719, 906
Tru9I TTAA 5 cut(s) 330, 492, 666, 719, 906
TscAI CASTG 4 cut(s) 27, 362, 388, 795
TseFI GTSAC 1 cut(s) 914
Tsp45I GTSAC 1 cut(s) 914
TspDTI ATGAA 4 cut(s) 69, 539, 679, 737
TspRI CASTG 4 cut(s) 27, 362, 388, 795
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 91, 806
XapI RAATTY 1 cut(s) 948
XceI RCATGY 2 cut(s) 218, 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.