Rmu_sc0000841.1_g000026

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000841.1
OG0019046
Physical Location & Seq
Reverse (-)
96144 .. 99062
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1245 bp
atggtgtacagatctcaaaacgtctctaataaggctgaaatttggaggggaactaggaggcacataggtgctcaagggctgcaggagcagcgcatgcgacataatactagacatcgactcccagccaaaacactccttcagtgcaagtgtgtatgcaagtcatggcgtggttatctctcagaccctcagttcaccaaagtcctattctcacgtgcaccaccaaccacttgctttttgatccgcggcttcactctggatggcttgcttccgtactcaatctgcagacccagaagaaacttcttggtcgatgttgacattaatagctcaagcagcagcagctacaacttggcagcagtcaagcttccccaagatggaatcgcagactcatacgacatgtcatatgattttgtaaagattgtaggttcatgcaacggcctcgtatgtctgaaggactcatcgcgctacagtcccccttttcacagttgcaatcccatgactggtgagtctatgcacttgtctcctcctccaatgcgtccccccaaagatgagtggaagccgtttgtttctggttttgggtttagtcccatcagccgtgtttataaggtcctagttatgcactgcaacgaatcaaaggccaaggttttgacagttgggtctaagatttggagaagcattaatgcaaataattacgagttgtttcctcctcataactcacgcatggtttttatgaatggatatctttacattgtagttcatgatcgtcttcgaagcacttgtccagtttctatatgtgcccttgatgttgaaagcgagcaattcatcgagcaaatatcaccgccttttattttagacgatgatgcctattattaccaccactgtaaccttgtaatagtgagaggttgcctttctttcgttgcctccaggactaacgaaattaatgtctgggtgatggaaaattatggtgtgaacgaggcttggacccatgaatacgaatttataggcacatttaaaccacacgatgtgcgaattaaaatatgggtacagctactgaaaataaaagacgaagggctagtattgctgttacgtgaggacggattctatgcttctacttgtactcttagaacctgcggcgagccttggatggtagaggaggctaaattggctaatgggatgccatccacgattacgagtgcatgtgcctttacaccaagctttgttcccctaaatgatatgatcaggggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

414

Amino Acids

47.2

Weight (kDa)

8.7

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 126 - 356 1.7e-25 F-box associated beta propeller domain
FBA_1 PF07734 131 - 407 8.7e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019046)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003237
rosa_multiflora Rmu_sc0000841.1_g000026
rosa_roxburghii Rroxscaffold_3G00250670
rosa_samantha Rh7AG236500 Rh7BG232000 Rh7BG232100 Rh7CG252200 Rh7CG252300 Rh7DG242500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
AasI GACNNNNNNGTC 2 cut(s) 502, 652
Acc36I ACCTGC 1 cut(s) 1133
AccII CGCG 2 cut(s) 243, 460
AciI CCGC 4 cut(s) 241, 243, 836, 1128
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 2 cut(s) 39, 992
AcuI CTGAAG 2 cut(s) 122, 467
AcvI CACGTG 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 1021
AfaI GTAC 4 cut(s) 8, 272, 1041, 1114
AfiI CCNNNNNNNGG 2 cut(s) 371, 497
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 1 cut(s) 806
AjnI CCWGG 1 cut(s) 920
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AleI CACNNNNGTG 1 cut(s) 66
AluBI AGCT 5 cut(s) 324, 339, 361, 1045, 1212
AluI AGCT 5 cut(s) 324, 339, 361, 1045, 1212
Alw21I GWGCWC 2 cut(s) 73, 217
Alw26I GTCTC 2 cut(s) 28, 522
Alw44I GTGCAC 1 cut(s) 213
AlwI GGATC 1 cut(s) 232
AlwNI CAGNNNCTG 1 cut(s) 1048
AoxI GGCC 2 cut(s) 433, 633
ApaLI GTGCAC 1 cut(s) 213
ApeKI GCWGC 6 cut(s) 79, 88, 330, 333, 336, 350
ApoI RAATTY 2 cut(s) 39, 992
ArsI GACNNNNNNTTYG 4 cut(s) 760, 792, 924, 956
AseI ATTAAT 3 cut(s) 318, 675, 936
AspLEI GCGC 2 cut(s) 93, 462
AspS9I GGNCC 2 cut(s) 604, 978
AsuHPI GGTGA 4 cut(s) 184, 512, 825, 958
AsuII TTCGAA 1 cut(s) 766
AvaII GGWCC 2 cut(s) 604, 978
BaeGI GKGCMC 2 cut(s) 217, 796
BbrPI CACGTG 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 755
Bbv12I GWGCWC 2 cut(s) 73, 217
BbvI GCAGC 6 cut(s) 66, 100, 342, 345, 348, 362
BccI CCATC 6 cut(s) 251, 365, 593, 943, 1135, 1183
BceAI ACGGC 3 cut(s) 448, 541, 576
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 1 cut(s) 922
BclI TGATCA 1 cut(s) 1233
BcoDI GTCTC 2 cut(s) 28, 522
BfaI CTAG 4 cut(s) 54, 108, 608, 1070
BfmI CTRYAG 3 cut(s) 80, 280, 463
BfuAI ACCTGC 1 cut(s) 1133
BglII AGATCT 1 cut(s) 11
BisI GCNGC 8 cut(s) 80, 89, 244, 331, 334, 337, 351, 1129
BlsI GCNGC 8 cut(s) 81, 90, 245, 332, 335, 338, 352, 1130
Bme1390I CCNGG 1 cut(s) 922
Bme18I GGWCC 2 cut(s) 604, 978
BmgT120I GGNCC 2 cut(s) 604, 978
BmiI GGNNCC 1 cut(s) 980
BmrFI CCNGG 1 cut(s) 922
BmsI GCATC 2 cut(s) 847, 1161
BpiI GAAGAC 1 cut(s) 755
BpmI CTGGAG 1 cut(s) 904
Bpu14I TTCGAA 1 cut(s) 766
BpuEI CTTGAG 2 cut(s) 57, 310
BsaAI YACGTR 2 cut(s) 212, 1085
BsaJI CCNNGG 3 cut(s) 241, 636, 1136
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 497
Bse1I ACTGG 2 cut(s) 502, 779
BseBI CCWGG 1 cut(s) 922
BseDI CCNNGG 3 cut(s) 241, 636, 1136
BseGI GGATG 4 cut(s) 262, 1146, 1175, 1176
BseLI CCNNNNNNNGG 2 cut(s) 371, 497
BseMII CTCAG 2 cut(s) 192, 200
BseNI ACTGG 2 cut(s) 502, 779
BseRI GAGGAG 4 cut(s) 510, 513, 693, 1163
BseSI GKGCMC 2 cut(s) 217, 796
BseXI GCAGC 6 cut(s) 66, 100, 342, 345, 348, 362
BseYI CCCAGC 1 cut(s) 121
Bsh1236I CGCG 2 cut(s) 243, 460
BshFI GGCC 2 cut(s) 435, 635
BsiHKAI GWGCWC 2 cut(s) 73, 217
BslFI GGGAC 3 cut(s) 453, 519, 567
BslI CCNNNNNNNGG 2 cut(s) 371, 497
BsmAI GTCTC 2 cut(s) 28, 522
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 3 cut(s) 453, 519, 567
BsnI GGCC 2 cut(s) 435, 635
Bsp119I TTCGAA 1 cut(s) 766
Bsp1286I GDGCHC 3 cut(s) 73, 217, 796
Bsp1407I TGTACA 1 cut(s) 6
Bsp143I GATC 4 cut(s) 11, 237, 757, 1233
BspACI CCGC 4 cut(s) 241, 243, 836, 1128
BspANI GGCC 2 cut(s) 435, 635
BspCNI CTCAG 2 cut(s) 191, 199
BspFNI CGCG 2 cut(s) 243, 460
BspHI TCATGA 1 cut(s) 754
BspLI GGNNCC 1 cut(s) 980
BspMAI CTGCAG 2 cut(s) 84, 284
BspMI ACCTGC 1 cut(s) 1133
BspPI GGATC 1 cut(s) 232
BspT104I TTCGAA 1 cut(s) 766
BsrGI TGTACA 1 cut(s) 6
BsrI ACTGG 2 cut(s) 502, 779
BssECI CCNNGG 3 cut(s) 241, 636, 1136
BssMI GATC 4 cut(s) 11, 237, 757, 1233
BssT1I CCWWGG 2 cut(s) 636, 1136
Bst2UI CCWGG 1 cut(s) 922
Bst4CI ACNGT 4 cut(s) 467, 482, 649, 878
BstAPI GCANNNNNTGC 1 cut(s) 94
BstAUI TGTACA 1 cut(s) 6
BstBAI YACGTR 2 cut(s) 212, 1085
BstBI TTCGAA 1 cut(s) 766
BstC8I GCNNGC 4 cut(s) 95, 263, 812, 1133
BstDEI CTNAG 4 cut(s) 178, 186, 657, 1118
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 4 cut(s) 262, 1146, 1175, 1176
BstFNI CGCG 2 cut(s) 243, 460
BstHHI GCGC 2 cut(s) 93, 462
BstKTI GATC 4 cut(s) 14, 240, 760, 1236
BstMAI GTCTC 2 cut(s) 28, 522
BstMBI GATC 4 cut(s) 11, 237, 757, 1233
BstMWI GCNNNNNNNGC 7 cut(s) 85, 88, 94, 330, 336, 1075, 1160
BstNI CCWGG 1 cut(s) 922
BstNSI RCATGY 3 cut(s) 97, 397, 1197
BstSCI CCNGG 1 cut(s) 920
BstSFI CTRYAG 3 cut(s) 80, 280, 463
BstSLI GKGCMC 2 cut(s) 217, 796
BstUI CGCG 2 cut(s) 243, 460
BstV1I GCAGC 6 cut(s) 66, 100, 342, 345, 348, 362
BstV2I GAAGAC 1 cut(s) 755
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BsuRI GGCC 2 cut(s) 435, 635
BtgI CCRYGG 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 4 cut(s) 262, 1146, 1175, 1176
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 3 cut(s) 146, 616, 874
BveI ACCTGC 1 cut(s) 1133
Cac8I GCNNGC 4 cut(s) 95, 263, 812, 1133
CaiI CAGNNNCTG 1 cut(s) 1048
CciI TCATGA 1 cut(s) 754
CfoI GCGC 2 cut(s) 93, 462
Cfr13I GGNCC 2 cut(s) 604, 978
Cfr42I CCGCGG 1 cut(s) 244
CseI GACGC 1 cut(s) 521
Csp6I GTAC 4 cut(s) 7, 271, 1040, 1113
CviAII CATG 9 cut(s) 94, 162, 394, 426, 493, 718, 755, 983, 1194
CviQI GTAC 4 cut(s) 7, 271, 1040, 1113
DdeI CTNAG 4 cut(s) 178, 186, 657, 1118
DpnI GATC 4 cut(s) 13, 239, 759, 1235
DpnII GATC 4 cut(s) 11, 237, 757, 1233
DraI TTTAAA 1 cut(s) 1009
DraIII CACNNNGTG 1 cut(s) 1021
DrdI GACNNNNNNGTC 2 cut(s) 502, 652
DseDI GACNNNNNNGTC 2 cut(s) 502, 652
Eco130I CCWWGG 2 cut(s) 636, 1136
Eco32I GATATC 1 cut(s) 737
Eco47I GGWCC 2 cut(s) 604, 978
Eco57I CTGAAG 2 cut(s) 122, 467
Eco72I CACGTG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 604
EcoRII CCWGG 1 cut(s) 920
EcoRV GATATC 1 cut(s) 737
EcoT14I CCWWGG 2 cut(s) 636, 1136
ErhI CCWWGG 2 cut(s) 636, 1136
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 9 cut(s) 97, 165, 397, 429, 496, 721, 758, 986, 1197
FaqI GGGAC 3 cut(s) 453, 519, 567
FatI CATG 9 cut(s) 93, 161, 393, 425, 492, 717, 754, 982, 1193
FauNDI CATATG 1 cut(s) 400
FbaI TGATCA 1 cut(s) 1233
Fnu4HI GCNGC 8 cut(s) 80, 89, 244, 331, 334, 337, 351, 1129
FokI GGATG 4 cut(s) 269, 1153, 1162, 1183
Fsp4HI GCNGC 8 cut(s) 80, 89, 244, 331, 334, 337, 351, 1129
FspBI CTAG 4 cut(s) 54, 108, 608, 1070
GlaI GCGC 2 cut(s) 92, 461
GluI GCNGC 8 cut(s) 80, 89, 244, 331, 334, 337, 351, 1129
GsaI CCCAGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 904
HaeIII GGCC 2 cut(s) 435, 635
HgaI GACGC 1 cut(s) 521
HhaI GCGC 2 cut(s) 93, 462
Hin1II CATG 9 cut(s) 97, 165, 397, 429, 496, 721, 758, 986, 1197
Hin6I GCGC 2 cut(s) 91, 460
HinP1I GCGC 2 cut(s) 91, 460
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 2 cut(s) 359, 1210
HinfI GANTC 7 cut(s) 117, 375, 383, 452, 503, 626, 1095
HphI GGTGA 4 cut(s) 184, 512, 825, 958
Hpy166II GTNNAC 5 cut(s) 7, 192, 215, 313, 967
Hpy188I TCNGA 2 cut(s) 181, 447
Hpy188III TCNNGA 2 cut(s) 254, 755
Hpy8I GTNNAC 5 cut(s) 7, 192, 215, 313, 967
HpyAV CCTTC 3 cut(s) 146, 442, 1058
HpyCH4III ACNGT 4 cut(s) 467, 482, 649, 878
HpyCH4IV ACGT 3 cut(s) 21, 211, 1084
HpyF10VI GCNNNNNNNGC 7 cut(s) 85, 88, 94, 330, 336, 1075, 1160
HpyF3I CTNAG 4 cut(s) 178, 186, 657, 1118
HpySE526I ACGT 3 cut(s) 21, 211, 1084
Hsp92II CATG 9 cut(s) 97, 165, 397, 429, 496, 721, 758, 986, 1197
HspAI GCGC 2 cut(s) 91, 460
Ksp22I TGATCA 1 cut(s) 1233
KspI CCGCGG 1 cut(s) 244
Kzo9I GATC 4 cut(s) 11, 237, 757, 1233
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 6 cut(s) 66, 100, 342, 345, 348, 362
LweI GCATC 2 cut(s) 847, 1161
MaeI CTAG 4 cut(s) 54, 108, 608, 1070
MaeII ACGT 3 cut(s) 21, 211, 1084
MaeIII GTNAC 2 cut(s) 878, 1080
MalI GATC 4 cut(s) 13, 239, 759, 1235
MboI GATC 4 cut(s) 11, 237, 757, 1233
MboII GAAGA 2 cut(s) 303, 755
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 3 cut(s) 73, 217, 796
MluCI AATT 8 cut(s) 39, 685, 815, 933, 955, 992, 1026, 1157
MlyI GAGTC 4 cut(s) 111, 377, 446, 512
MseI TTAA 5 cut(s) 318, 675, 936, 1008, 1029
MslI CAYNNNNRTG 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 922
MvaI CCWGG 1 cut(s) 922
MvnI CGCG 2 cut(s) 243, 460
MwoI GCNNNNNNNGC 7 cut(s) 85, 88, 94, 330, 336, 1075, 1160
NdeI CATATG 1 cut(s) 400
NdeII GATC 4 cut(s) 11, 237, 757, 1233
NlaIII CATG 9 cut(s) 97, 165, 397, 429, 496, 721, 758, 986, 1197
NlaIV GGNNCC 1 cut(s) 980
NspI RCATGY 3 cut(s) 97, 397, 1197
NspV TTCGAA 1 cut(s) 766
OliI CACNNNNGTG 1 cut(s) 66
PaeI GCATGC 1 cut(s) 97
PagI TCATGA 1 cut(s) 754
PciI ACATGT 1 cut(s) 393
PfeI GAWTC 3 cut(s) 375, 626, 1095
PfoI TCCNGGA 1 cut(s) 920
PkrI GCNGC 8 cut(s) 81, 90, 245, 332, 335, 338, 352, 1130
PleI GAGTC 4 cut(s) 111, 377, 446, 511
PmaCI CACGTG 1 cut(s) 212
PmlI CACGTG 1 cut(s) 212
PpsI GAGTC 4 cut(s) 111, 377, 446, 511
Ppu21I YACGTR 2 cut(s) 212, 1085
PpuMI RGGWCCY 1 cut(s) 604
PscI ACATGT 1 cut(s) 393
PshBI ATTAAT 3 cut(s) 318, 675, 936
PsiI TTATAA 1 cut(s) 600
Psp5II RGGWCCY 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 920
PspCI CACGTG 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 920
PspN4I GGNNCC 1 cut(s) 980
PspPI GGNCC 2 cut(s) 604, 978
PspPPI RGGWCCY 1 cut(s) 604
PstI CTGCAG 2 cut(s) 84, 284
PstNI CAGNNNCTG 1 cut(s) 1048
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 4 cut(s) 8, 272, 1041, 1114
RsaNI GTAC 4 cut(s) 7, 271, 1040, 1113
RseI CAYNNNNRTG 1 cut(s) 66
SacII CCGCGG 1 cut(s) 244
SaqAI TTAA 5 cut(s) 318, 675, 936, 1008, 1029
SatI GCNGC 8 cut(s) 80, 89, 244, 331, 334, 337, 351, 1129
Sau3AI GATC 4 cut(s) 11, 237, 757, 1233
Sau96I GGNCC 2 cut(s) 604, 978
SchI GAGTC 4 cut(s) 111, 377, 446, 512
ScrFI CCNGG 1 cut(s) 922
SduI GDGCHC 3 cut(s) 73, 217, 796
SfaNI GCATC 2 cut(s) 847, 1161
SfcI CTRYAG 3 cut(s) 80, 280, 463
Sfr303I CCGCGG 1 cut(s) 244
SfuI TTCGAA 1 cut(s) 766
SgrBI CCGCGG 1 cut(s) 244
SinI GGWCC 2 cut(s) 604, 978
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 72, 325
SmoI CTYRAG 2 cut(s) 72, 325
SphI GCATGC 1 cut(s) 97
Sse9I AATT 8 cut(s) 39, 685, 815, 933, 955, 992, 1026, 1157
SsiI CCGC 4 cut(s) 241, 243, 836, 1128
SspMI CTAG 4 cut(s) 54, 108, 608, 1070
StyD4I CCNGG 1 cut(s) 920
StyI CCWWGG 2 cut(s) 636, 1136
TaaI ACNGT 4 cut(s) 467, 482, 649, 878
TaiI ACGT 3 cut(s) 24, 214, 1087
TaqI TCGA 4 cut(s) 115, 306, 766, 822
TasI AATT 8 cut(s) 39, 685, 815, 933, 955, 992, 1026, 1157
TatI WGTACW 2 cut(s) 6, 1112
TauI GCSGC 2 cut(s) 246, 1131
TfiI GAWTC 3 cut(s) 375, 626, 1095
Tru1I TTAA 5 cut(s) 318, 675, 936, 1008, 1029
Tru9I TTAA 5 cut(s) 318, 675, 936, 1008, 1029
TscAI CASTG 3 cut(s) 146, 623, 881
TseI GCWGC 6 cut(s) 79, 88, 330, 333, 336, 350
TspDTI ATGAA 5 cut(s) 414, 743, 743, 808, 999
TspGWI ACGGA 2 cut(s) 258, 1107
TspRI CASTG 3 cut(s) 146, 623, 881
VneI GTGCAC 1 cut(s) 213
VpaK11BI GGWCC 2 cut(s) 604, 978
VspI ATTAAT 3 cut(s) 318, 675, 936
XapI RAATTY 2 cut(s) 39, 992
XceI RCATGY 3 cut(s) 97, 397, 1197
XspI CTAG 4 cut(s) 54, 108, 608, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.