Rmu_sc0000861.1_g000036

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000861.1
OG0019509
Physical Location & Seq
Reverse (-)
164949 .. 165653
705 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 705 bp
ctggccacacggtctctctctctctccctcgatctctcttcttcttctcttcctctgcaaccaccggagaacaccagtgccgccctctcctcgggctcccccgcctccaccgccgagaagctccagaacgccatccgcctcctcaagtcccagctccgctccgagctcctctcccgccactccgacctcctctcccatctctcctccctccagcacgccgaccacgccctctccaccgtccgatcctccgtccacacccgatctgagctctccgaccccctccgctccatcaccgccctcactctccagctctccaacctccacgccacctccgagctcctccaccacacctccgagctcctccaccacaccctctgcctctccaagaagctctgcgacctcgccgccgaccccgagaagatcgatctcgccaaggccgcccagctgcattgggagatcttggcgttctacgacgagtacgatctctccggcatcgaagtcgttgaggaggagctcggctgggtcagagagaccggcgacaagttgcgcggcgaggccatgaaggcgttggagctagggatggaggggttgaatcagtgggaggtggccatcaggttgcaggtgttctccggtggttgcagagggaagaagagagagggagcgagaggtcagggggagagagaaggagggagagagaaaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG5

Protein Analysis

234

Amino Acids

25.65

Weight (kDa)

6.01

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG5_N PF10392 30 - 122 5.5e-11 Conserved oligomeric Golgi complex subunit 5, N-terminal
COG5_C PF20649 162 - 209 4.2e-06 Conserved oligomeric Golgi complex subunit 5, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 610
Acc36I ACCTGC 1 cut(s) 610
AccBSI CCGCTC 2 cut(s) 159, 285
AccII CGCG 1 cut(s) 549
AclWI GGATC 1 cut(s) 237
AcoI YGGCCR 2 cut(s) 3, 606
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 592
Alw21I GWGCWC 5 cut(s) 168, 270, 339, 360, 516
Alw26I GTCTC 2 cut(s) 18, 524
AlwI GGATC 1 cut(s) 237
Ama87I CYCGRG 2 cut(s) 91, 413
AoxI GGCC 4 cut(s) 3, 435, 555, 606
ApeKI GCWGC 1 cut(s) 445
AspLEI GCGC 1 cut(s) 549
AsuHPI GGTGA 1 cut(s) 283
AvaI CYCGRG 2 cut(s) 91, 413
BalI TGGCCA 2 cut(s) 5, 608
BanII GRGCYC 6 cut(s) 98, 168, 270, 339, 360, 516
Bbv12I GWGCWC 5 cut(s) 168, 270, 339, 360, 516
BbvI GCAGC 1 cut(s) 432
BccI CCATC 5 cut(s) 140, 204, 296, 574, 617
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BcoDI GTCTC 2 cut(s) 18, 524
BfaI CTAG 1 cut(s) 575
BfuAI ACCTGC 1 cut(s) 610
BglI GCCNNNNNGGC 1 cut(s) 563
BglII AGATCT 1 cut(s) 456
BisI GCNGC 5 cut(s) 81, 405, 438, 446, 550
BlsI GCNGC 5 cut(s) 82, 406, 439, 447, 551
BmeT110I CYCGRG 2 cut(s) 91, 413
BmiI GGNNCC 1 cut(s) 97
BmsI GCATC 1 cut(s) 501
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BpmI CTGGAG 3 cut(s) 107, 194, 290
BpuEI CTTGAG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 423
BsaI GGTCTC 2 cut(s) 18, 524
BsaJI CCNNGG 2 cut(s) 90, 432
BsaWI WCCGGW 2 cut(s) 64, 629
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 90, 432
BseGI GGATG 2 cut(s) 132, 585
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 9 cut(s) 79, 131, 158, 179, 193, 329, 350, 521, 524
BseXI GCAGC 1 cut(s) 432
BseYI CCCAGC 3 cut(s) 150, 441, 519
Bsh1236I CGCG 1 cut(s) 549
BshFI GGCC 4 cut(s) 5, 437, 557, 608
BshVI ATCGAT 1 cut(s) 423
BsiHKAI GWGCWC 5 cut(s) 168, 270, 339, 360, 516
BsiHKCI CYCGRG 2 cut(s) 91, 413
BsiSI CCGG 4 cut(s) 65, 489, 534, 630
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 18, 524
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 4 cut(s) 5, 437, 557, 608
Bso31I GGTCTC 2 cut(s) 18, 524
BsoBI CYCGRG 2 cut(s) 91, 413
Bsp1286I GDGCHC 6 cut(s) 98, 168, 270, 339, 360, 516
Bsp143I GATC 7 cut(s) 31, 242, 260, 420, 424, 456, 481
BspANI GGCC 4 cut(s) 5, 437, 557, 608
BspCNI CTCAG 1 cut(s) 256
BspDI ATCGAT 1 cut(s) 423
BspFNI CGCG 1 cut(s) 549
BspLI GGNNCC 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 1 cut(s) 237
BspTNI GGTCTC 2 cut(s) 18, 524
BsrBI CCGCTC 2 cut(s) 159, 285
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 2 cut(s) 90, 432
BssMI GATC 7 cut(s) 31, 242, 260, 420, 424, 456, 481
BssT1I CCWWGG 1 cut(s) 432
Bst4CI ACNGT 2 cut(s) 12, 238
Bst6I CTCTTC 3 cut(s) 43, 54, 644
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 132, 585
BstFNI CGCG 1 cut(s) 549
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 7 cut(s) 34, 245, 263, 423, 427, 459, 484
BstMAI GTCTC 2 cut(s) 18, 524
BstMBI GATC 7 cut(s) 31, 242, 260, 420, 424, 456, 481
BstMWI GCNNNNNNNGC 4 cut(s) 110, 224, 437, 563
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
Bsu15I ATCGAT 1 cut(s) 423
BsuRI GGCC 4 cut(s) 5, 437, 557, 608
BsuTUI ATCGAT 1 cut(s) 423
BtsCI GGATG 2 cut(s) 132, 585
BtsIMutI CAGTG 2 cut(s) 82, 602
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 549
Cfr10I RCCGGY 1 cut(s) 533
ClaI ATCGAT 1 cut(s) 423
Csp6I GTAC 1 cut(s) 478
CviAII CATG 1 cut(s) 559
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 1 cut(s) 264
DpnI GATC 7 cut(s) 33, 244, 262, 422, 426, 458, 483
DpnII GATC 7 cut(s) 31, 242, 260, 420, 424, 456, 481
EaeI YGGCCR 2 cut(s) 3, 606
Eam1104I CTCTTC 3 cut(s) 43, 54, 644
EarI CTCTTC 3 cut(s) 43, 54, 644
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 5 cut(s) 166, 268, 337, 358, 514
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 6 cut(s) 98, 168, 270, 339, 360, 516
Eco31I GGTCTC 2 cut(s) 18, 524
Eco53kI GAGCTC 5 cut(s) 166, 268, 337, 358, 514
Eco88I CYCGRG 2 cut(s) 91, 413
EcoICRI GAGCTC 5 cut(s) 166, 268, 337, 358, 514
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 6 cut(s) 98, 168, 270, 339, 360, 516
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 1 cut(s) 562
FaiI YATR 2 cut(s) 560, 703
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 558
FauI CCCGC 2 cut(s) 109, 182
Fnu4HI GCNGC 5 cut(s) 81, 405, 438, 446, 550
FokI GGATG 2 cut(s) 119, 592
FriOI GRGCYC 6 cut(s) 98, 168, 270, 339, 360, 516
Fsp4HI GCNGC 5 cut(s) 81, 405, 438, 446, 550
FspBI CTAG 1 cut(s) 575
GlaI GCGC 1 cut(s) 548
GluI GCNGC 5 cut(s) 81, 405, 438, 446, 550
GsaI CCCAGC 3 cut(s) 154, 445, 523
GsuI CTGGAG 3 cut(s) 107, 194, 290
HaeIII GGCC 4 cut(s) 5, 437, 557, 608
HapII CCGG 4 cut(s) 65, 489, 534, 630
HhaI GCGC 1 cut(s) 549
Hin1II CATG 1 cut(s) 562
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HinfI GANTC 1 cut(s) 592
HpaII CCGG 4 cut(s) 65, 489, 534, 630
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 8 cut(s) 163, 184, 242, 265, 274, 334, 355, 527
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 2 cut(s) 556, 677
HpyCH4III ACNGT 2 cut(s) 12, 238
HpyCH4V TGCA 4 cut(s) 58, 448, 619, 639
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 224, 437, 563
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 1 cut(s) 562
HspAI GCGC 1 cut(s) 547
Kzo9I GATC 7 cut(s) 31, 242, 260, 420, 424, 456, 481
Lsp1109I GCAGC 1 cut(s) 432
LweI GCATC 1 cut(s) 501
MaeI CTAG 1 cut(s) 575
MalI GATC 7 cut(s) 33, 244, 262, 422, 426, 458, 483
MbiI CCGCTC 2 cut(s) 159, 285
MboI GATC 7 cut(s) 31, 242, 260, 420, 424, 456, 481
MboII GAAGA 7 cut(s) 30, 33, 36, 41, 430, 658, 661
MflI RGATCY 1 cut(s) 456
MhlI GDGCHC 6 cut(s) 98, 168, 270, 339, 360, 516
MlsI TGGCCA 2 cut(s) 5, 608
MluNI TGGCCA 2 cut(s) 5, 608
MmeI TCCRAC 4 cut(s) 207, 297, 339, 549
Mox20I TGGCCA 2 cut(s) 5, 608
MscI TGGCCA 2 cut(s) 5, 608
Msp20I TGGCCA 2 cut(s) 5, 608
MspA1I CMGCKG 1 cut(s) 445
MspI CCGG 4 cut(s) 65, 489, 534, 630
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 4 cut(s) 110, 224, 437, 563
NdeII GATC 7 cut(s) 31, 242, 260, 420, 424, 456, 481
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 1 cut(s) 97
NmeAIII GCCGAG 2 cut(s) 139, 495
PaqCI CACCTGC 1 cut(s) 610
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 477
PfeI GAWTC 1 cut(s) 592
PkrI GCNGC 5 cut(s) 82, 406, 439, 447, 551
Psp124BI GAGCTC 5 cut(s) 168, 270, 339, 360, 516
PspFI CCCAGC 3 cut(s) 150, 441, 519
PspN4I GGNNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 456
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SacI GAGCTC 5 cut(s) 168, 270, 339, 360, 516
SatI GCNGC 5 cut(s) 81, 405, 438, 446, 550
Sau3AI GATC 7 cut(s) 31, 242, 260, 420, 424, 456, 481
SduI GDGCHC 6 cut(s) 98, 168, 270, 339, 360, 516
SfaNI GCATC 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SspMI CTAG 1 cut(s) 575
SstI GAGCTC 5 cut(s) 168, 270, 339, 360, 516
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 2 cut(s) 12, 238
TaqI TCGA 3 cut(s) 30, 423, 495
TauI GCSGC 4 cut(s) 83, 407, 440, 552
TfiI GAWTC 1 cut(s) 592
TscAI CASTG 2 cut(s) 82, 602
TseI GCWGC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 575
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 2 cut(s) 82, 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 565
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.