Rmu_sc0000954.1_g000009

F-box protein SKIP14-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000954.1
Physical Location & Seq
Reverse (-)
33342 .. 37116
3775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000954.1_g000009.1.cds

Sequence Viewer

Length: 1260 bp
atgcagttaagtattccaggatgtataaaaataagtgttgagagcatcttgttaaacctaaggaccttgaagtctgcaggcaaacctggaataaagcagttaagaattggaggtctctctggtataacagacaagcagttcgaagagttaaaattcttgctgggtgcagataaccatacccaggttaaagccccaaaaccacggtattttcatggtgggctatcgtacctctcttgtgatgatgattgcgccattgacattgaagcatgccccaggtgccagagactaagtttagtttatgattgcccagcagagagttgccaagggaaatatcagaaggctcagatgtgcagggcttgcatactctgcataactcgctgtattagctgtgggtgttgccttggagactgcgattatgtggagacgttttgcctacagttgctttgtttggaatgtttggagaacctactcaactgtcaagagaggcatggagaaaatggtgctaccaaatgtgccatattttgtcaggagagcagctacaaagtaaaaagcgaacctcgtagggtttcgagtctaggtggcggggtcggcggccatctgcttgcagcgtcggtgacaggcttgacgggtttcacaggtaggagacggtttgacgggtctggtggcttgcttccgatctcgggatcagtggttaactggttttggtcggagctaaccagcatggtggttgatcaaaggcggcggcggttggttggctggccttctcgaggtcggggatcactttttttggcgacgggaattgaggcaattcgatccttgattccggtcggttgtcgcagcttttgggtaggtggttgtcgactggattttgcagttggagaccaagcagccagccgccggacagatttgcgacggcggcaacaatggagcggcctagggcttctgcccagttttctcgtggtcggttgtcgcagcttttgggtaggtggttgtcgcctggattttgcagtcggagacaaagcagttctgatatcgatctgcagcagattacttgcaggttttcagtgcttgatgggatgctggcaaggccggccgccgaacagattggcgacggtggcggcaatggagcgatctagggcttctgcccagttttctcgggtttgggttggggtctttgggccttggctcaaatccgggttggtgggccttaattcgtgggcttgtaaggagggtgccttgccaccctcacttgtcacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

419

Amino Acids

45.65

Weight (kDa)

9.07

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 1046
AccB1I GGYRCC 2 cut(s) 276, 1232
AccBSI CCGCTC 1 cut(s) 930
AccI GTMKAC 1 cut(s) 859
AclWI GGATC 3 cut(s) 691, 784, 807
AcoI YGGCCR 2 cut(s) 592, 1091
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 4 cut(s) 181, 680, 767, 897
AgsI TTSAA 2 cut(s) 70, 263
AjnI CCWGG 5 cut(s) 16, 85, 180, 272, 996
AluBI AGCT 5 cut(s) 387, 537, 712, 840, 975
AluI AGCT 5 cut(s) 387, 537, 712, 840, 975
Alw26I GTCTC 7 cut(s) 119, 277, 399, 416, 637, 873, 1008
AlwI GGATC 3 cut(s) 691, 784, 807
Ama87I CYCGRG 3 cut(s) 679, 765, 1155
AoxI GGCC 7 cut(s) 592, 758, 931, 1087, 1091, 1178, 1204
ApeKI GCWGC 6 cut(s) 534, 605, 837, 887, 972, 1041
ApoI RAATTY 1 cut(s) 152
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspA2I CCTAGG 1 cut(s) 934
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 3 cut(s) 63, 1178, 1204
AsuC2I CCSGG 1 cut(s) 1195
AsuHPI GGTGA 1 cut(s) 625
AsuII TTCGAA 1 cut(s) 141
AvaI CYCGRG 3 cut(s) 679, 765, 1155
AvaII GGWCC 1 cut(s) 63
AvrII CCTAGG 1 cut(s) 934
AxyI CCTNAGG 1 cut(s) 59
BanI GGYRCC 2 cut(s) 276, 1232
BauI CACGAG 1 cut(s) 956
BbvI GCAGC 6 cut(s) 546, 617, 849, 899, 984, 1053
BccI CCATC 2 cut(s) 603, 1066
BceAI ACGGC 1 cut(s) 929
BciT130I CCWGG 5 cut(s) 18, 87, 182, 274, 998
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 1 cut(s) 1195
BcoDI GTCTC 7 cut(s) 119, 277, 399, 416, 637, 873, 1008
BfaI CTAG 3 cut(s) 575, 935, 1134
BfmI CTRYAG 3 cut(s) 75, 434, 1039
BfuAI ACCTGC 1 cut(s) 1046
BlnI CCTAGG 1 cut(s) 934
Bme1390I CCNGG 6 cut(s) 18, 87, 182, 274, 998, 1195
Bme18I GGWCC 1 cut(s) 63
BmeT110I CYCGRG 3 cut(s) 679, 765, 1155
BmgT120I GGNCC 3 cut(s) 63, 1178, 1204
BmiI GGNNCC 2 cut(s) 278, 1234
BmrFI CCNGG 6 cut(s) 18, 87, 182, 274, 998, 1195
BmrI ACTGGG 2 cut(s) 942, 1141
BmsI GCATC 2 cut(s) 54, 1067
BmuI ACTGGG 2 cut(s) 942, 1141
Bpu14I TTCGAA 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 1195
Bsa29I ATCGAT 1 cut(s) 1034
BsaBI GATNNNNATC 1 cut(s) 1034
BsaI GGTCTC 2 cut(s) 119, 873
BsaJI CCNNGG 7 cut(s) 180, 200, 272, 322, 400, 934, 1181
BsaWI WCCGGW 1 cut(s) 823
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 680, 767, 897
Bse118I RCCGGY 1 cut(s) 1089
Bse1I ACTGG 4 cut(s) 701, 867, 948, 1147
Bse21I CCTNAGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 1128
Bse8I GATNNNNATC 1 cut(s) 1034
BseBI CCWGG 5 cut(s) 18, 87, 182, 274, 998
BseCI ATCGAT 1 cut(s) 1034
BseDI CCNNGG 7 cut(s) 180, 200, 272, 322, 400, 934, 1181
BseGI GGATG 2 cut(s) 26, 1082
BseJI GATNNNNATC 1 cut(s) 1034
BseLI CCNNNNNNNGG 4 cut(s) 181, 680, 767, 897
BseMI GCAATG 1 cut(s) 1128
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 4 cut(s) 701, 867, 948, 1147
BseX3I CGGCCG 1 cut(s) 1091
BseXI GCAGC 6 cut(s) 546, 617, 849, 899, 984, 1053
BseYI CCCAGC 2 cut(s) 160, 307
BsgI GTGCAG 2 cut(s) 186, 370
Bsh1285I CGRYCG 2 cut(s) 828, 1094
BshFI GGCC 7 cut(s) 594, 760, 933, 1089, 1093, 1180, 1206
BshNI GGYRCC 2 cut(s) 276, 1232
BshVI ATCGAT 1 cut(s) 1034
BsiEI CGRYCG 2 cut(s) 828, 1094
BsiHKCI CYCGRG 3 cut(s) 679, 765, 1155
BsiSI CCGG 4 cut(s) 824, 898, 1090, 1194
BslI CCNNNNNNNGG 4 cut(s) 181, 680, 767, 897
BsmAI GTCTC 7 cut(s) 119, 277, 399, 416, 637, 873, 1008
BsmBI CGTCTC 2 cut(s) 416, 637
BsnI GGCC 7 cut(s) 594, 760, 933, 1089, 1093, 1180, 1206
Bso31I GGTCTC 2 cut(s) 119, 873
BsoBI CYCGRG 3 cut(s) 679, 765, 1155
Bsp119I TTCGAA 1 cut(s) 141
Bsp143I GATC 7 cut(s) 675, 683, 730, 776, 812, 1035, 1130
BspANI GGCC 7 cut(s) 594, 760, 933, 1089, 1093, 1180, 1206
BspCNI CTCAG 1 cut(s) 355
BspDI ATCGAT 1 cut(s) 1034
BspLI GGNNCC 2 cut(s) 278, 1234
BspMAI CTGCAG 2 cut(s) 79, 1043
BspMI ACCTGC 1 cut(s) 1046
BspPI GGATC 3 cut(s) 691, 784, 807
BspT104I TTCGAA 1 cut(s) 141
BspT107I GGYRCC 2 cut(s) 276, 1232
BspTNI GGTCTC 2 cut(s) 119, 873
BsrBI CCGCTC 1 cut(s) 930
BsrDI GCAATG 1 cut(s) 1128
BsrFI RCCGGY 1 cut(s) 1089
BsrI ACTGG 4 cut(s) 701, 867, 948, 1147
BssAI RCCGGY 1 cut(s) 1089
BssECI CCNNGG 7 cut(s) 180, 200, 272, 322, 400, 934, 1181
BssMI GATC 7 cut(s) 675, 683, 730, 776, 812, 1035, 1130
BssSI CACGAG 1 cut(s) 956
BssT1I CCWWGG 4 cut(s) 322, 400, 934, 1181
Bst2BI CACGAG 1 cut(s) 956
Bst2UI CCWGG 5 cut(s) 18, 87, 182, 274, 998
Bst4CI ACNGT 5 cut(s) 204, 438, 476, 648, 1114
Bst6I CTCTTC 1 cut(s) 138
BstAPI GCANNNNNTGC 2 cut(s) 357, 366
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 9 cut(s) 79, 268, 358, 603, 668, 758, 892, 1082, 1091
BstDEI CTNAG 4 cut(s) 59, 287, 342, 1257
BstDSI CCRYGG 1 cut(s) 200
BstENI CCTNNNNNAGG 1 cut(s) 765
BstF5I GGATG 2 cut(s) 26, 1082
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 7 cut(s) 678, 686, 733, 779, 815, 1038, 1133
BstMAI GTCTC 7 cut(s) 119, 277, 399, 416, 637, 873, 1008
BstMBI GATC 7 cut(s) 675, 683, 730, 776, 812, 1035, 1130
BstMCI CGRYCG 2 cut(s) 828, 1094
BstNI CCWGG 5 cut(s) 18, 87, 182, 274, 998
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 6 cut(s) 16, 85, 180, 272, 996, 1193
BstSFI CTRYAG 3 cut(s) 75, 434, 1039
BstV1I GCAGC 6 cut(s) 546, 617, 849, 899, 984, 1053
BstXI CCANNNNNNTGG 1 cut(s) 724
BstZI CGGCCG 1 cut(s) 1091
Bsu15I ATCGAT 1 cut(s) 1034
Bsu36I CCTNAGG 1 cut(s) 59
BsuRI GGCC 7 cut(s) 594, 760, 933, 1089, 1093, 1180, 1206
BsuTUI ATCGAT 1 cut(s) 1034
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 26, 1082
BtsIMutI CAGTG 2 cut(s) 693, 1070
BveI ACCTGC 1 cut(s) 1046
Cac8I GCNNGC 9 cut(s) 79, 268, 358, 603, 668, 758, 892, 1082, 1091
CfoI GCGC 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 1089
Cfr13I GGNCC 3 cut(s) 63, 1178, 1204
ClaI ATCGAT 1 cut(s) 1034
CseI GACGC 1 cut(s) 597
Csp6I GTAC 1 cut(s) 226
CviAII CATG 4 cut(s) 212, 267, 488, 721
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 4 cut(s) 59, 287, 342, 1257
DpnI GATC 7 cut(s) 677, 685, 732, 778, 814, 1037, 1132
DpnII GATC 7 cut(s) 675, 683, 730, 776, 812, 1035, 1130
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 2 cut(s) 592, 1091
EagI CGGCCG 1 cut(s) 1091
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 1091
Eco130I CCWWGG 4 cut(s) 322, 400, 934, 1181
Eco31I GGTCTC 2 cut(s) 119, 873
Eco32I GATATC 1 cut(s) 1032
Eco47I GGWCC 1 cut(s) 63
Eco52I CGGCCG 1 cut(s) 1091
Eco81I CCTNAGG 1 cut(s) 59
Eco88I CYCGRG 3 cut(s) 679, 765, 1155
EcoNI CCTNNNNNAGG 1 cut(s) 765
EcoO109I RGGNCCY 1 cut(s) 63
EcoRII CCWGG 5 cut(s) 16, 85, 180, 272, 996
EcoRV GATATC 1 cut(s) 1032
EcoT14I CCWWGG 4 cut(s) 322, 400, 934, 1181
ErhI CCWWGG 4 cut(s) 322, 400, 934, 1181
Esp3I CGTCTC 2 cut(s) 416, 637
FaeI CATG 4 cut(s) 215, 270, 491, 724
FatI CATG 4 cut(s) 211, 266, 487, 720
FauI CCCGC 1 cut(s) 575
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 859
FokI GGATG 2 cut(s) 33, 1089
FseI GGCCGGCC 1 cut(s) 1093
FspBI CTAG 3 cut(s) 575, 935, 1134
GlaI GCGC 1 cut(s) 250
GsaI CCCAGC 2 cut(s) 164, 311
HaeIII GGCC 7 cut(s) 594, 760, 933, 1089, 1093, 1180, 1206
HapII CCGG 4 cut(s) 824, 898, 1090, 1194
HgaI GACGC 1 cut(s) 597
HhaI GCGC 1 cut(s) 251
Hin1II CATG 4 cut(s) 215, 270, 491, 724
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HincII GTYRAC 2 cut(s) 694, 860
HindII GTYRAC 2 cut(s) 694, 860
HinfI GANTC 2 cut(s) 571, 820
HpaI GTTAAC 1 cut(s) 694
HpaII CCGG 4 cut(s) 824, 898, 1090, 1194
HphI GGTGA 1 cut(s) 625
Hpy166II GTNNAC 2 cut(s) 694, 860
Hpy188I TCNGA 6 cut(s) 336, 345, 675, 709, 1013, 1029
Hpy188III TCNNGA 4 cut(s) 479, 527, 681, 765
Hpy8I GTNNAC 2 cut(s) 694, 860
Hpy99I CGWCG 4 cut(s) 613, 796, 915, 1114
HpyAV CCTTC 2 cut(s) 331, 771
HpyCH4III ACNGT 5 cut(s) 204, 438, 476, 648, 1114
HpyCH4IV ACGT 1 cut(s) 425
HpyF3I CTNAG 4 cut(s) 59, 287, 342, 1257
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 4 cut(s) 215, 270, 491, 724
HspAI GCGC 1 cut(s) 249
KroI GCCGGC 1 cut(s) 1089
KroNI GCCGGC 1 cut(s) 1091
Ksp22I TGATCA 1 cut(s) 730
KspAI GTTAAC 1 cut(s) 694
Kzo9I GATC 7 cut(s) 675, 683, 730, 776, 812, 1035, 1130
LmnI GCTCC 3 cut(s) 709, 927, 1126
Lsp1109I GCAGC 6 cut(s) 546, 617, 849, 899, 984, 1053
LweI GCATC 2 cut(s) 54, 1067
MaeI CTAG 3 cut(s) 575, 935, 1134
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 2 cut(s) 613, 1252
MalI GATC 7 cut(s) 677, 685, 732, 778, 814, 1037, 1132
MbiI CCGCTC 1 cut(s) 930
MboI GATC 7 cut(s) 675, 683, 730, 776, 812, 1035, 1130
MboII GAAGA 1 cut(s) 155
MluCI AATT 5 cut(s) 105, 152, 798, 807, 1210
MlyI GAGTC 1 cut(s) 580
MmeI TCCRAC 3 cut(s) 687, 856, 991
MnlI CCTC 8 cut(s) 104, 239, 477, 567, 761, 796, 1222, 1255
MroNI GCCGGC 1 cut(s) 1089
MseI TTAA 7 cut(s) 8, 53, 101, 149, 186, 693, 1209
MspI CCGG 4 cut(s) 824, 898, 1090, 1194
MspR9I CCNGG 6 cut(s) 18, 87, 182, 274, 998, 1195
MvaI CCWGG 5 cut(s) 18, 87, 182, 274, 998
NaeI GCCGGC 1 cut(s) 1091
NciI CCSGG 1 cut(s) 1195
NdeII GATC 7 cut(s) 675, 683, 730, 776, 812, 1035, 1130
NgoMIV GCCGGC 1 cut(s) 1089
NlaIII CATG 4 cut(s) 215, 270, 491, 724
NlaIV GGNNCC 2 cut(s) 278, 1234
NmuCI GTSAC 2 cut(s) 613, 1252
NspI RCATGY 1 cut(s) 270
NspV TTCGAA 1 cut(s) 141
PaeI GCATGC 1 cut(s) 270
PaeR7I CTCGAG 1 cut(s) 765
PdiI GCCGGC 1 cut(s) 1091
PfeI GAWTC 1 cut(s) 820
PfoI TCCNGGA 1 cut(s) 16
PleI GAGTC 1 cut(s) 579
PpsI GAGTC 1 cut(s) 579
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 5 cut(s) 16, 85, 180, 272, 996
PspFI CCCAGC 2 cut(s) 160, 307
PspGI CCWGG 5 cut(s) 16, 85, 180, 272, 996
PspN4I GGNNCC 2 cut(s) 278, 1234
PspPI GGNCC 3 cut(s) 63, 1178, 1204
PspPPI RGGWCCY 1 cut(s) 63
PstI CTGCAG 2 cut(s) 79, 1043
RigI GGCCGGCC 1 cut(s) 1093
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SalI GTCGAC 1 cut(s) 858
SaqAI TTAA 7 cut(s) 8, 53, 101, 149, 186, 693, 1209
Sau3AI GATC 7 cut(s) 675, 683, 730, 776, 812, 1035, 1130
Sau96I GGNCC 3 cut(s) 63, 1178, 1204
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 6 cut(s) 18, 87, 182, 274, 998, 1195
SfaNI GCATC 2 cut(s) 54, 1067
SfcI CTRYAG 3 cut(s) 75, 434, 1039
Sfr274I CTCGAG 1 cut(s) 765
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 765
SmlI CTYRAG 1 cut(s) 765
SmoI CTYRAG 1 cut(s) 765
SphI GCATGC 1 cut(s) 270
Sse9I AATT 5 cut(s) 105, 152, 798, 807, 1210
SspMI CTAG 3 cut(s) 575, 935, 1134
StyD4I CCNGG 6 cut(s) 16, 85, 180, 272, 996, 1193
StyI CCWWGG 4 cut(s) 322, 400, 934, 1181
TaaI ACNGT 5 cut(s) 204, 438, 476, 648, 1114
TaiI ACGT 1 cut(s) 428
TaqI TCGA 6 cut(s) 141, 569, 766, 811, 859, 1034
TasI AATT 5 cut(s) 105, 152, 798, 807, 1210
TauI GCSGC 8 cut(s) 594, 742, 745, 897, 919, 933, 1096, 1121
TfiI GAWTC 1 cut(s) 820
Tru1I TTAA 7 cut(s) 8, 53, 101, 149, 186, 693, 1209
Tru9I TTAA 7 cut(s) 8, 53, 101, 149, 186, 693, 1209
TscAI CASTG 2 cut(s) 693, 1070
TseFI GTSAC 2 cut(s) 613, 1252
TseI GCWGC 6 cut(s) 534, 605, 837, 887, 972, 1041
Tsp45I GTSAC 2 cut(s) 613, 1252
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 2 cut(s) 693, 1070
VpaK11BI GGWCC 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 765
XapI RAATTY 1 cut(s) 152
XceI RCATGY 1 cut(s) 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 955
XhoI CTCGAG 1 cut(s) 765
XmaJI CCTAGG 1 cut(s) 934
XmiI GTMKAC 1 cut(s) 859
XspI CTAG 3 cut(s) 575, 935, 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.