Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005923

Physical Location & Seq

Genomic Coordinates Reverse (-)

90074635 .. 90077120

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG681600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCTTTGAATCTGTCTCGTGGCTCAGTTCTGCCTAAGTATCCTTCCCCAGAGCATAGTTTGTGTTCTTCTGTTAGGTGTTCTAATGGGTATGTGAGGGATCAATGTAAAGAGAAGAGTTTGGATGGTGATGCATCGAGTTCAAATGCGGAGTTGAAGAAGAATACCCATTACAAGGGTGAATTGGGTGGCTATTGTGAGCCTTCCGTTGATGATATTCTTGATAGGTTGCCTGTTGATCCTTTTGGGATGGATATGAGGTCTACTTTTACGGCGATTAGTGGTTGGCTTGAGGATTTTGAGAAGGGGTGTGAGTCTTATGGGTTTGGGGTGGATGAACAGAAGAAGAAGGTGGTGGATGGTGGGTTGTTTGCTGGTCTGAATTGGGTTTGGAATAGCGCTGTGATATTTCAGCCGGAACTGGGTGAGGTGAAGTTTGATGGAATATCGATTCCATATGATAGCTTTGATGGGTTTGGGATCAATGATGGAGGTTTTGTATTGGACGACAATGTGGAGGAGTTTCTGGGTTTTGGCCATGTGGTGAACTTGGATGTTGGTTATGGAGCTAAGGAACTGCCGGTTGGAACTATGGAAAGGCCAGAATGTAGCATAAAGAATTTTGATAGTGAAGGCGGTGCTCCACATGATGCTATGTTTTATGCATTGGGTTATCTCGGCGTTCAGGATCTTCTTTCAGTTCAACGGGTTTGCAGGTCTTTGAATCATGCAGTCAAAAGTGATCCTCTTTTATGGAGGAGCATTAACATTGATTGGCCATTGAATGAGAGGATCACTGATGATGCTCTTGTAAATTTAACTAGCAGGGCTCAGGGTAATCTTCAAACCTTAAGTCTAGTGCATTGTGCATGGATTACCGATGTTGGGCTGCATCGCGTGTTTGACAGCAATCCAAGGCTGACAAAATTAAGTATTCCAGGATGTATAAAAATAAGTGTTGAGAGCATCTTGTTAAACCTAAGGACCTTGAAGTCTGCAGGCAAACCTGGAATAAAGCAGTTAAGAATTGGAGGTCTCTCTGGTATAACAGACAAGCAGTTCGAAGAGTTAAAATTCTTGCTAATACCCAGGTTAAATCCCCAAAACCACGGTATTTTCATGGTCAAGCAGCCTGGACTAGAGATGTCAACTGTCCAAAGTGAATTAGACTTGTCATATGGGCAACGTTATCAAGGGGTGACAATCCCAGAGGCGTATGAACGCCTAATCCTTGATACAATCAAAAGGCGATCAACAGCACTTTGTACGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

425

Amino Acids

47.05

Weight (kDa)

5.32

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	215 - 257	6.2e-08	F-box-like
G6PD_C	PF02781	373 - 419	1e-06	Glucose-6-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52710 FvH4_6g52710 FvH4_6g52710
malus_domestica	MD09G1017100.v1.1 MD17G1017800.v1.1
prunus_persica	Prupe.3G300300_v2.0.a1 Prupe.3G300300_v2.0.a1 Prupe.3G300300_v2.0.a1
pyrus_communis	pycom111g01390 pycom17g01420 pycom17g01430
rosa_chinensis	RchiOBHm_Chr2g0174221 RchiOBHm_Chr2g0174321
rosa_laevigata	RLG00000022257
rosa_multiflora	Rmu_sc0000954.1_g000005 Rmu_sc0000954.1_g000009 Rmu_sc0007150.1_g000009 Rmu_sc0015388.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078320
rosa_rugosa	Rorug02G0576100
rosa_samantha	Rh2AG655700 Rh2AG655900 Rh2BG666900 Rh2BG667100 Rh2CG630800 Rh2DG681300 Rh2DG681600
rosa_wichuraiana	Rw2G053800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	991
Acc36I	ACCTGC	1 cut(s)	705
AccI	GTMKAC	1 cut(s)	263
AccII	CGCG	1 cut(s)	897
AciI	CCGC	2 cut(s)	149, 636
AclI	AACGTT	1 cut(s)	1186
AclWI	GGATC	6 cut(s)	108, 233, 488, 696, 737, 800
AcoI	YGGCCR	2 cut(s)	535, 776
AcsI	RAATTY	3 cut(s)	619, 814, 1073
AfaI	GTAC	1 cut(s)	1267
AfeI	AGCGCT	1 cut(s)	400
AfiI	CCNNNNNNNGG	3 cut(s)	175, 422, 885
AflII	CTTAAG	1 cut(s)	850
AgsI	TTSAA	8 cut(s)	10, 144, 157, 704, 724, 784, 845, 991
AjnI	CCWGG	4 cut(s)	937, 1006, 1088, 1132
AjuI	GAANNNNNNNTTGG	2 cut(s)	567, 599
AloI	GAACNNNNNNTCC	2 cut(s)	1212, 1244
AluBI	AGCT	2 cut(s)	465, 569
AluI	AGCT	2 cut(s)	465, 569
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	2 cut(s)	21, 1040
AlwI	GGATC	6 cut(s)	108, 233, 488, 696, 737, 800
Aor51HI	AGCGCT	1 cut(s)	400
AoxI	GGCC	3 cut(s)	535, 599, 776
ApeKI	GCWGC	2 cut(s)	889, 1129
ApoI	RAATTY	3 cut(s)	619, 814, 1073
ArsI	GACNNNNNNTTYG	4 cut(s)	838, 870, 1043, 1075
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	984
AsuHPI	GGTGA	6 cut(s)	140, 191, 437, 442, 556, 1210
AsuII	TTCGAA	1 cut(s)	1062
AvaII	GGWCC	1 cut(s)	984
AxyI	CCTNAGG	1 cut(s)	980
BalI	TGGCCA	2 cut(s)	537, 778
BanII	GRGCYC	1 cut(s)	832
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	2 cut(s)	876, 1141
BccI	CCATC	6 cut(s)	119, 244, 353, 434, 464, 482
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	4 cut(s)	939, 1008, 1090, 1134
BciVI	GTATCC	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	21, 1040
BfaI	CTAG	3 cut(s)	822, 857, 1139
BfmI	CTRYAG	1 cut(s)	996
BfoI	RGCGCY	1 cut(s)	402
BfrI	CTTAAG	1 cut(s)	850
BfuAI	ACCTGC	1 cut(s)	705
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	890, 1130
BlsI	GCNGC	2 cut(s)	891, 1131
Bme1390I	CCNGG	4 cut(s)	939, 1008, 1090, 1134
Bme18I	GGWCC	1 cut(s)	984
BmgT120I	GGNCC	1 cut(s)	984
BmrFI	CCNGG	4 cut(s)	939, 1008, 1090, 1134
BmrI	ACTGGG	1 cut(s)	431
BmsI	GCATC	6 cut(s)	121, 143, 640, 793, 901, 975
BmuI	ACTGGG	1 cut(s)	431
Bpu10I	CCTNAGC	2 cut(s)	570, 831
Bpu14I	TTCGAA	1 cut(s)	1062
BpuEI	CTTGAG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	1040
BsaJI	CCNNGG	3 cut(s)	914, 1088, 1108
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 422, 885
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	1 cut(s)	426
Bse21I	CCTNAGG	1 cut(s)	980
BseBI	CCWGG	4 cut(s)	939, 1008, 1090, 1134
BseCI	ATCGAT	1 cut(s)	449
BseDI	CCNNGG	3 cut(s)	914, 1088, 1108
BseGI	GGATG	6 cut(s)	130, 255, 340, 364, 559, 947
BseLI	CCNNNNNNNGG	3 cut(s)	175, 422, 885
BseMII	CTCAG	2 cut(s)	39, 845
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	2 cut(s)	533, 772
BseXI	GCAGC	2 cut(s)	876, 1141
Bsh1236I	CGCG	1 cut(s)	897
BshFI	GGCC	3 cut(s)	537, 601, 778
BshVI	ATCGAT	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	643
BsiSI	CCGG	2 cut(s)	416, 581
BslI	CCNNNNNNNGG	3 cut(s)	175, 422, 885
BsmAI	GTCTC	2 cut(s)	21, 1040
BsnI	GGCC	3 cut(s)	537, 601, 778
Bso31I	GGTCTC	1 cut(s)	1040
Bsp119I	TTCGAA	1 cut(s)	1062
Bsp1286I	GDGCHC	2 cut(s)	643, 832
Bsp143I	GATC	7 cut(s)	100, 238, 480, 688, 742, 792, 1250
BspACI	CCGC	2 cut(s)	149, 636
BspANI	GGCC	3 cut(s)	537, 601, 778
BspCNI	CTCAG	2 cut(s)	38, 844
BspDI	ATCGAT	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	897
BspMAI	CTGCAG	1 cut(s)	1000
BspMI	ACCTGC	1 cut(s)	705
BspPI	GGATC	6 cut(s)	108, 233, 488, 696, 737, 800
BspT104I	TTCGAA	1 cut(s)	1062
BspTI	CTTAAG	1 cut(s)	850
BspTNI	GGTCTC	1 cut(s)	1040
BsrFI	RCCGGY	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	426
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	3 cut(s)	914, 1088, 1108
BssMI	GATC	7 cut(s)	100, 238, 480, 688, 742, 792, 1250
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	914
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	4 cut(s)	939, 1008, 1090, 1134
Bst4CI	ACNGT	2 cut(s)	1112, 1153
Bst6I	CTCTTC	2 cut(s)	110, 1059
BstAFI	CTTAAG	1 cut(s)	850
BstBI	TTCGAA	1 cut(s)	1062
BstC8I	GCNNGC	1 cut(s)	1000
BstDEI	CTNAG	5 cut(s)	25, 36, 570, 831, 980
BstDSI	CCRYGG	1 cut(s)	1108
BstF5I	GGATG	6 cut(s)	130, 255, 340, 364, 559, 947
BstFNI	CGCG	1 cut(s)	897
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	7 cut(s)	103, 241, 483, 691, 745, 795, 1253
BstMAI	GTCTC	2 cut(s)	21, 1040
BstMBI	GATC	7 cut(s)	100, 238, 480, 688, 742, 792, 1250
BstNI	CCWGG	4 cut(s)	939, 1008, 1090, 1134
BstSCI	CCNGG	4 cut(s)	937, 1006, 1088, 1132
BstSFI	CTRYAG	1 cut(s)	996
BstUI	CGCG	1 cut(s)	897
BstV1I	GCAGC	2 cut(s)	876, 1141
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
Bsu15I	ATCGAT	1 cut(s)	449
Bsu36I	CCTNAGG	1 cut(s)	980
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	537, 601, 778
BsuTUI	ATCGAT	1 cut(s)	449
BtgI	CCRYGG	1 cut(s)	1108
BtgZI	GCGATG	1 cut(s)	878
BtsCI	GGATG	6 cut(s)	130, 255, 340, 364, 559, 947
BtsIMutI	CAGTG	1 cut(s)	795
BveI	ACCTGC	1 cut(s)	705
Cac8I	GCNNGC	1 cut(s)	1000
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	984
ClaI	ATCGAT	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	1266
CviAII	CATG	5 cut(s)	539, 647, 728, 870, 1120
CviQI	GTAC	1 cut(s)	1266
DdeI	CTNAG	5 cut(s)	25, 36, 570, 831, 980
DpnI	GATC	7 cut(s)	102, 240, 482, 690, 744, 794, 1252
DpnII	GATC	7 cut(s)	100, 238, 480, 688, 742, 792, 1250
DrdI	GACNNNNNNGTC	1 cut(s)	991
DseDI	GACNNNNNNGTC	1 cut(s)	991
EaeI	YGGCCR	2 cut(s)	535, 776
Eam1104I	CTCTTC	2 cut(s)	110, 1059
EarI	CTCTTC	2 cut(s)	110, 1059
Eco130I	CCWWGG	1 cut(s)	914
Eco24I	GRGCYC	1 cut(s)	832
Eco31I	GGTCTC	1 cut(s)	1040
Eco47I	GGWCC	1 cut(s)	984
Eco47III	AGCGCT	1 cut(s)	400
Eco81I	CCTNAGG	1 cut(s)	980
EcoO109I	RGGNCCY	1 cut(s)	984
EcoRII	CCWGG	4 cut(s)	937, 1006, 1088, 1132
EcoT14I	CCWWGG	1 cut(s)	914
EcoT22I	ATGCAT	2 cut(s)	136, 667
EcoT38I	GRGCYC	1 cut(s)	832
ErhI	CCWWGG	1 cut(s)	914
FaeI	CATG	5 cut(s)	542, 650, 731, 873, 1123
FatI	CATG	5 cut(s)	538, 646, 727, 869, 1119
FauNDI	CATATG	2 cut(s)	457, 1177
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	890, 1130
FokI	GGATG	6 cut(s)	137, 262, 347, 371, 566, 954
FriOI	GRGCYC	1 cut(s)	832
Fsp4HI	GCNGC	2 cut(s)	890, 1130
FspBI	CTAG	3 cut(s)	822, 857, 1139
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	2 cut(s)	890, 1130
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	537, 601, 778
HapII	CCGG	2 cut(s)	416, 581
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	5 cut(s)	542, 650, 731, 873, 1123
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	1149
HindII	GTYRAC	1 cut(s)	1149
HinfI	GANTC	4 cut(s)	10, 314, 451, 724
HpaII	CCGG	2 cut(s)	416, 581
HphI	GGTGA	6 cut(s)	140, 191, 437, 442, 556, 1210
Hpy166II	GTNNAC	3 cut(s)	264, 547, 1149
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	2 cut(s)	221, 686
Hpy8I	GTNNAC	3 cut(s)	264, 547, 1149
HpyAV	CCTTC	5 cut(s)	54, 213, 298, 343, 626
HpyCH4III	ACNGT	2 cut(s)	1112, 1153
HpyCH4IV	ACGT	1 cut(s)	1186
HpyCH4V	TGCA	8 cut(s)	134, 665, 714, 731, 862, 869, 892, 998
HpyF3I	CTNAG	5 cut(s)	25, 36, 570, 831, 980
HpySE526I	ACGT	1 cut(s)	1186
Hsp92II	CATG	5 cut(s)	542, 650, 731, 873, 1123
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	7 cut(s)	100, 238, 480, 688, 742, 792, 1250
LmnI	GCTCC	3 cut(s)	566, 646, 759
Lsp1109I	GCAGC	2 cut(s)	876, 1141
LweI	GCATC	6 cut(s)	121, 143, 640, 793, 901, 975
MaeI	CTAG	3 cut(s)	822, 857, 1139
MaeII	ACGT	1 cut(s)	1186
MaeIII	GTNAC	1 cut(s)	1198
MalI	GATC	7 cut(s)	102, 240, 482, 690, 744, 794, 1252
MboI	GATC	7 cut(s)	100, 238, 480, 688, 742, 792, 1250
MboII	GAAGA	9 cut(s)	60, 127, 169, 172, 355, 358, 683, 833, 1076
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	2 cut(s)	643, 832
MlsI	TGGCCA	2 cut(s)	537, 778
MluCI	AATT	8 cut(s)	182, 382, 619, 814, 926, 1026, 1073, 1163
MluNI	TGGCCA	2 cut(s)	537, 778
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	565
Mox20I	TGGCCA	2 cut(s)	537, 778
Mph1103I	ATGCAT	2 cut(s)	136, 667
MscI	TGGCCA	2 cut(s)	537, 778
MseI	TTAA	8 cut(s)	765, 818, 851, 929, 974, 1022, 1070, 1094
Msp20I	TGGCCA	2 cut(s)	537, 778
MspCI	CTTAAG	1 cut(s)	850
MspI	CCGG	2 cut(s)	416, 581
MspR9I	CCNGG	4 cut(s)	939, 1008, 1090, 1134
MvaI	CCWGG	4 cut(s)	939, 1008, 1090, 1134
MvnI	CGCG	1 cut(s)	897
NdeI	CATATG	2 cut(s)	457, 1177
NdeII	GATC	7 cut(s)	100, 238, 480, 688, 742, 792, 1250
NlaIII	CATG	5 cut(s)	542, 650, 731, 873, 1123
NmeAIII	GCCGAG	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	1198
NsiI	ATGCAT	2 cut(s)	136, 667
NspV	TTCGAA	1 cut(s)	1062
PfeI	GAWTC	3 cut(s)	10, 451, 724
PfoI	TCCNGGA	1 cut(s)	937
PkrI	GCNGC	2 cut(s)	891, 1131
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PpuMI	RGGWCCY	1 cut(s)	984
Psp1406I	AACGTT	1 cut(s)	1186
Psp5II	RGGWCCY	1 cut(s)	984
Psp6I	CCWGG	4 cut(s)	937, 1006, 1088, 1132
PspGI	CCWGG	4 cut(s)	937, 1006, 1088, 1132
PspPI	GGNCC	1 cut(s)	984
PspPPI	RGGWCCY	1 cut(s)	984
PstI	CTGCAG	1 cut(s)	1000
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	1 cut(s)	1267
RsaNI	GTAC	1 cut(s)	1266
SaqAI	TTAA	8 cut(s)	765, 818, 851, 929, 974, 1022, 1070, 1094
SatI	GCNGC	2 cut(s)	890, 1130
Sau3AI	GATC	7 cut(s)	100, 238, 480, 688, 742, 792, 1250
Sau96I	GGNCC	1 cut(s)	984
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	4 cut(s)	939, 1008, 1090, 1134
SduI	GDGCHC	2 cut(s)	643, 832
SfaNI	GCATC	6 cut(s)	121, 143, 640, 793, 901, 975
SfcI	CTRYAG	1 cut(s)	996
SfuI	TTCGAA	1 cut(s)	1062
SinI	GGWCC	1 cut(s)	984
SmlI	CTYRAG	2 cut(s)	290, 850
SmoI	CTYRAG	2 cut(s)	290, 850
Sse9I	AATT	8 cut(s)	182, 382, 619, 814, 926, 1026, 1073, 1163
SsiI	CCGC	2 cut(s)	149, 636
SspMI	CTAG	3 cut(s)	822, 857, 1139
StyD4I	CCNGG	4 cut(s)	937, 1006, 1088, 1132
StyI	CCWWGG	1 cut(s)	914
TaaI	ACNGT	2 cut(s)	1112, 1153
TaiI	ACGT	1 cut(s)	1189
TaqI	TCGA	3 cut(s)	137, 449, 1062
TasI	AATT	8 cut(s)	182, 382, 619, 814, 926, 1026, 1073, 1163
TfiI	GAWTC	3 cut(s)	10, 451, 724
Tru1I	TTAA	8 cut(s)	765, 818, 851, 929, 974, 1022, 1070, 1094
Tru9I	TTAA	8 cut(s)	765, 818, 851, 929, 974, 1022, 1070, 1094
TscAI	CASTG	1 cut(s)	802
TseFI	GTSAC	1 cut(s)	1198
TseI	GCWGC	2 cut(s)	889, 1129
Tsp45I	GTSAC	1 cut(s)	1198
TspDTI	ATGAA	3 cut(s)	351, 1108, 1233
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	1 cut(s)	802
Vha464I	CTTAAG	1 cut(s)	850
VpaK11BI	GGWCC	1 cut(s)	984
XapI	RAATTY	3 cut(s)	619, 814, 1073
XmiI	GTMKAC	1 cut(s)	263
XspI	CTAG	3 cut(s)	822, 857, 1139
Zsp2I	ATGCAT	2 cut(s)	136, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.