Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005923

Physical Location & Seq

Genomic Coordinates Reverse (-)

87252715 .. 87254352

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG655700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAAGTTTGATGGAATATCGATTCCATATGATAGCTTTGATGGGTTTGGGATCAATGATGGAGGTTTTGTATTGGACGACAATGTGGAGGAGGTTCTGGGTTTTGGCCATGTGGCGAACTTGGATGTTAGTTATGAAGCTAAGGAACTGCTGGTTGGAACCATGGAAAGGCCGGAATATAGCATAAAGAATTTTGATAGTGAAGGGGGTGATCCACATGATGCTATGTTTTATGCGTTGGGTTATCTTGGTGTTCAGGATCTTTTTTCGGTTGAATGGGTCTGCAGGTCTTTTAATCATGCAGTCAAAAATGACCCCCTTTTATTGAGGAGCATTCACATTGATTGGCCATTGAATGAGAGGATCACCGATGATGCTCTTGTAAATTTAACTAGCAGGGCTCAAAGTAATCTTCAAACCTTAAGTCTAGTGCAATGTGCATGGATCACCGATATTGGGCTGCATCGCGTGTTTGACAGCAATCCAAGGTCGACAAAATTAAGTATTCCAGGATGTATAAAAATAAGTGTTCAGAGCATCTTGTTAAACCTAAGGACCTTGAAGTCTGCAGGAAAACCTGGAATAAAGCAGTTAAGAATTGGAGGTCTCTCTGGTATAACAGACAAGCAGTTCGAAGAGTTAAAATTCTTGCTTGGTGCAGATAACCATATCCAGGTTAAAGCCCCAAAACCACGGTATTTTCATGGTGGGCTATTGTACCTCTCTTGTGATGATGATTGCGCCATTGACATTGAAGCATGCCCCAGGTGCCAGAGACTAAGTTTAGTTTATGATTGCCCAGCAGAGAGTTGCCAAGGGAAATATCAGAAGGCTCAGATGTGCAGGTCTTGCATACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

286

Amino Acids

31.84

Weight (kDa)

5.26

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52710 FvH4_6g52710 FvH4_6g52710
malus_domestica	MD09G1017100.v1.1 MD17G1017800.v1.1
prunus_persica	Prupe.3G300300_v2.0.a1 Prupe.3G300300_v2.0.a1 Prupe.3G300300_v2.0.a1
pyrus_communis	pycom111g01390 pycom17g01420 pycom17g01430
rosa_chinensis	RchiOBHm_Chr2g0174221 RchiOBHm_Chr2g0174321
rosa_laevigata	RLG00000022257
rosa_multiflora	Rmu_sc0000954.1_g000005 Rmu_sc0000954.1_g000009 Rmu_sc0007150.1_g000009 Rmu_sc0015388.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078320
rosa_rugosa	Rorug02G0576100
rosa_samantha	Rh2AG655700 Rh2AG655900 Rh2BG666900 Rh2BG667100 Rh2CG630800 Rh2DG681300 Rh2DG681600
rosa_wichuraiana	Rw2G053800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	562
Acc36I	ACCTGC	2 cut(s)	276, 834
AccB1I	GGYRCC	1 cut(s)	768
AccI	GTMKAC	1 cut(s)	491
AccII	CGCG	1 cut(s)	468
AclWI	GGATC	5 cut(s)	59, 206, 267, 371, 452
AcoI	YGGCCR	2 cut(s)	106, 347
AcsI	RAATTY	3 cut(s)	190, 385, 644
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	3 cut(s)	168, 456, 673
AflII	CTTAAG	1 cut(s)	421
AgsI	TTSAA	5 cut(s)	275, 355, 416, 562, 755
AjnI	CCWGG	4 cut(s)	508, 577, 672, 764
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	2 cut(s)	36, 140
AluI	AGCT	2 cut(s)	36, 140
Alw26I	GTCTC	2 cut(s)	611, 769
AlwI	GGATC	5 cut(s)	59, 206, 267, 371, 452
AoxI	GGCC	3 cut(s)	106, 170, 347
ApeKI	GCWGC	1 cut(s)	460
ApoI	RAATTY	3 cut(s)	190, 385, 644
ArsI	GACNNNNNNTTYG	4 cut(s)	409, 441, 614, 646
AspLEI	GCGC	1 cut(s)	743
AspS9I	GGNCC	1 cut(s)	555
AsuHPI	GGTGA	3 cut(s)	221, 358, 439
AsuII	TTCGAA	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	555
AxyI	CCTNAGG	1 cut(s)	551
BalI	TGGCCA	2 cut(s)	108, 349
BanI	GGYRCC	1 cut(s)	768
BanII	GRGCYC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	447
BccI	CCATC	3 cut(s)	5, 35, 53
BciT130I	CCWGG	4 cut(s)	510, 579, 674, 766
BcoDI	GTCTC	2 cut(s)	611, 769
BfaI	CTAG	2 cut(s)	393, 428
BfmI	CTRYAG	2 cut(s)	283, 567
BfrI	CTTAAG	1 cut(s)	421
BfuAI	ACCTGC	2 cut(s)	276, 834
BisI	GCNGC	1 cut(s)	461
BlsI	GCNGC	1 cut(s)	462
Bme1390I	CCNGG	4 cut(s)	510, 579, 674, 766
Bme18I	GGWCC	1 cut(s)	555
BmgT120I	GGNCC	1 cut(s)	555
BmiI	GGNNCC	2 cut(s)	160, 770
BmrFI	CCNGG	4 cut(s)	510, 579, 674, 766
BmsI	GCATC	4 cut(s)	211, 364, 472, 546
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	633
Bsa29I	ATCGAT	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	5 cut(s)	162, 485, 692, 764, 814
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 456, 673
Bse21I	CCTNAGG	1 cut(s)	551
Bse3DI	GCAATG	1 cut(s)	440
BseBI	CCWGG	4 cut(s)	510, 579, 674, 766
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	5 cut(s)	162, 485, 692, 764, 814
BseGI	GGATG	2 cut(s)	130, 518
BseLI	CCNNNNNNNGG	3 cut(s)	168, 456, 673
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	848
BseRI	GAGGAG	2 cut(s)	104, 343
BseXI	GCAGC	1 cut(s)	447
BseYI	CCCAGC	1 cut(s)	799
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	3 cut(s)	108, 172, 349
BshNI	GGYRCC	1 cut(s)	768
BshVI	ATCGAT	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	3 cut(s)	168, 456, 673
BsmAI	GTCTC	2 cut(s)	611, 769
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	108, 172, 349
Bso31I	GGTCTC	1 cut(s)	611
Bsp119I	TTCGAA	1 cut(s)	633
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	5 cut(s)	51, 211, 259, 363, 444
Bsp19I	CCATGG	1 cut(s)	162
BspANI	GGCC	3 cut(s)	108, 172, 349
BspCNI	CTCAG	1 cut(s)	847
BspDI	ATCGAT	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	2 cut(s)	160, 770
BspMAI	CTGCAG	2 cut(s)	287, 571
BspMI	ACCTGC	2 cut(s)	276, 834
BspPI	GGATC	5 cut(s)	59, 206, 267, 371, 452
BspT104I	TTCGAA	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	768
BspTI	CTTAAG	1 cut(s)	421
BspTNI	GGTCTC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	440
BssECI	CCNNGG	5 cut(s)	162, 485, 692, 764, 814
BssMI	GATC	5 cut(s)	51, 211, 259, 363, 444
BssT1I	CCWWGG	3 cut(s)	162, 485, 814
Bst2UI	CCWGG	4 cut(s)	510, 579, 674, 766
Bst4CI	ACNGT	1 cut(s)	696
Bst6I	CTCTTC	1 cut(s)	630
BstAFI	CTTAAG	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	849
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	760
BstDEI	CTNAG	4 cut(s)	141, 551, 779, 834
BstDSI	CCRYGG	2 cut(s)	162, 692
BstF5I	GGATG	2 cut(s)	130, 518
BstFNI	CGCG	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	743
BstKTI	GATC	5 cut(s)	54, 214, 262, 366, 447
BstMAI	GTCTC	2 cut(s)	611, 769
BstMBI	GATC	5 cut(s)	51, 211, 259, 363, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	768, 849
BstNI	CCWGG	4 cut(s)	510, 579, 674, 766
BstNSI	RCATGY	1 cut(s)	762
BstSCI	CCNGG	4 cut(s)	508, 577, 672, 764
BstSFI	CTRYAG	2 cut(s)	283, 567
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	551
BsuRI	GGCC	3 cut(s)	108, 172, 349
BsuTUI	ATCGAT	1 cut(s)	20
BtgI	CCRYGG	2 cut(s)	162, 692
BtgZI	GCGATG	1 cut(s)	449
BtsCI	GGATG	2 cut(s)	130, 518
BveI	ACCTGC	2 cut(s)	276, 834
Cac8I	GCNNGC	1 cut(s)	760
CfoI	GCGC	1 cut(s)	743
Cfr13I	GGNCC	1 cut(s)	555
ClaI	ATCGAT	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	718
CviAII	CATG	7 cut(s)	110, 163, 218, 299, 441, 704, 759
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	4 cut(s)	141, 551, 779, 834
DpnI	GATC	5 cut(s)	53, 213, 261, 365, 446
DpnII	GATC	5 cut(s)	51, 211, 259, 363, 444
DrdI	GACNNNNNNGTC	1 cut(s)	562
DseDI	GACNNNNNNGTC	1 cut(s)	562
EaeI	YGGCCR	2 cut(s)	106, 347
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco130I	CCWWGG	3 cut(s)	162, 485, 814
Eco24I	GRGCYC	1 cut(s)	403
Eco31I	GGTCTC	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	555
Eco81I	CCTNAGG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	555
EcoRII	CCWGG	4 cut(s)	508, 577, 672, 764
EcoT14I	CCWWGG	3 cut(s)	162, 485, 814
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	3 cut(s)	162, 485, 814
FaeI	CATG	7 cut(s)	113, 166, 221, 302, 444, 707, 762
FatI	CATG	7 cut(s)	109, 162, 217, 298, 440, 703, 758
FauNDI	CATATG	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	1 cut(s)	461
FokI	GGATG	2 cut(s)	137, 525
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	1 cut(s)	461
FspBI	CTAG	2 cut(s)	393, 428
GlaI	GCGC	1 cut(s)	742
GluI	GCNGC	1 cut(s)	461
GsaI	CCCAGC	1 cut(s)	803
HaeIII	GGCC	3 cut(s)	108, 172, 349
HapII	CCGG	1 cut(s)	173
HhaI	GCGC	1 cut(s)	743
Hin1II	CATG	7 cut(s)	113, 166, 221, 302, 444, 707, 762
Hin6I	GCGC	1 cut(s)	741
HinP1I	GCGC	1 cut(s)	741
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	3 cut(s)	221, 358, 439
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	4 cut(s)	534, 828, 837, 860
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	2 cut(s)	197, 823
HpyCH4III	ACNGT	1 cut(s)	696
HpyCH4V	TGCA	9 cut(s)	285, 302, 433, 440, 463, 569, 659, 843, 852
HpyF10VI	GCNNNNNNNGC	2 cut(s)	768, 849
HpyF3I	CTNAG	4 cut(s)	141, 551, 779, 834
Hsp92II	CATG	7 cut(s)	113, 166, 221, 302, 444, 707, 762
HspAI	GCGC	1 cut(s)	741
Kzo9I	GATC	5 cut(s)	51, 211, 259, 363, 444
LmnI	GCTCC	1 cut(s)	330
Lsp1109I	GCAGC	1 cut(s)	447
LweI	GCATC	4 cut(s)	211, 364, 472, 546
MaeI	CTAG	2 cut(s)	393, 428
MalI	GATC	5 cut(s)	53, 213, 261, 365, 446
MboI	GATC	5 cut(s)	51, 211, 259, 363, 444
MboII	GAAGA	2 cut(s)	404, 647
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	403
MlsI	TGGCCA	2 cut(s)	108, 349
MluCI	AATT	5 cut(s)	190, 385, 497, 597, 644
MluNI	TGGCCA	2 cut(s)	108, 349
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	7 cut(s)	56, 82, 85, 321, 354, 596, 731
Mox20I	TGGCCA	2 cut(s)	108, 349
MscI	TGGCCA	2 cut(s)	108, 349
MseI	TTAA	8 cut(s)	294, 389, 422, 500, 545, 593, 641, 678
Msp20I	TGGCCA	2 cut(s)	108, 349
MspCI	CTTAAG	1 cut(s)	421
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	4 cut(s)	510, 579, 674, 766
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	4 cut(s)	510, 579, 674, 766
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	768, 849
NcoI	CCATGG	1 cut(s)	162
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	5 cut(s)	51, 211, 259, 363, 444
NlaIII	CATG	7 cut(s)	113, 166, 221, 302, 444, 707, 762
NlaIV	GGNNCC	2 cut(s)	160, 770
NspI	RCATGY	1 cut(s)	762
NspV	TTCGAA	1 cut(s)	633
PaeI	GCATGC	1 cut(s)	762
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	1 cut(s)	462
PpuMI	RGGWCCY	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	555
Psp6I	CCWGG	4 cut(s)	508, 577, 672, 764
PspFI	CCCAGC	1 cut(s)	799
PspGI	CCWGG	4 cut(s)	508, 577, 672, 764
PspN4I	GGNNCC	2 cut(s)	160, 770
PspPI	GGNCC	1 cut(s)	555
PspPPI	RGGWCCY	1 cut(s)	555
PstI	CTGCAG	2 cut(s)	287, 571
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
SalI	GTCGAC	1 cut(s)	490
SaqAI	TTAA	8 cut(s)	294, 389, 422, 500, 545, 593, 641, 678
SatI	GCNGC	1 cut(s)	461
Sau3AI	GATC	5 cut(s)	51, 211, 259, 363, 444
Sau96I	GGNCC	1 cut(s)	555
ScrFI	CCNGG	4 cut(s)	510, 579, 674, 766
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	4 cut(s)	211, 364, 472, 546
SfcI	CTRYAG	2 cut(s)	283, 567
SfuI	TTCGAA	1 cut(s)	633
SinI	GGWCC	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
SphI	GCATGC	1 cut(s)	762
Sse9I	AATT	5 cut(s)	190, 385, 497, 597, 644
SspMI	CTAG	2 cut(s)	393, 428
StyD4I	CCNGG	4 cut(s)	508, 577, 672, 764
StyI	CCWWGG	3 cut(s)	162, 485, 814
TaaI	ACNGT	1 cut(s)	696
TaqI	TCGA	3 cut(s)	20, 491, 633
TasI	AATT	5 cut(s)	190, 385, 497, 597, 644
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	8 cut(s)	294, 389, 422, 500, 545, 593, 641, 678
Tru9I	TTAA	8 cut(s)	294, 389, 422, 500, 545, 593, 641, 678
TseI	GCWGC	1 cut(s)	460
TspDTI	ATGAA	3 cut(s)	17, 150, 692
Vha464I	CTTAAG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	555
XapI	RAATTY	3 cut(s)	190, 385, 644
XceI	RCATGY	1 cut(s)	762
XmiI	GTMKAC	1 cut(s)	491
XspI	CTAG	2 cut(s)	393, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.