Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000981.1

Orthogroup ID

OG0008646

Physical Location & Seq

Genomic Coordinates Reverse (-)

46301 .. 48001

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000981.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggaccaactatacgatattatgtataaattcaacttctctcttcctccggactatgccctggtgataagggctctgggatcactggaaggcacggccaaagttctggatcctgatttcaaagttgttgagagtgcatatccttttgtggttggaagacttttggctgacccaaatcctgatatgagaagaattttaagagaacttctcatatgcagtgatggatccataaggtggaataggctagaacgcctggttgcagcaatatctgaacaggcttctgagtctgttagagagtcccctaattcggaggagagtagtactcctaatcctttgagaaggaaatcatttgacatgcatgctgttgttgccgccactgaagatcttttacactttattctctctgcgaagggtcaaagggtacgtgtattccttgttcgggatataattggtgcagctgatgcttttttgcaggatgaagttgttggtaacatgttcaatgacaatcccaaagccagagacacacttgactcagagggacataccatgctcgtgagggtggtaaatgggtttcactatttcagtcaagctgtaaagttggccccagaggtgtggacagcaatgcttatacgcgtggcgtttacaccagaggttcataggtttactttagatatcttttcgtcgctactcattcattttagtggcaaaatcccagaaactactttcatttctctatctagacttatgcacaagttggtaaaaaaccgcagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

257

Amino Acids

29.08

Weight (kDa)

6.39

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24970 AT5G24970 AT5G24970
fragaria_vesca	FvH4_2g41400 FvH4_2g41400 FvH4_2g41400
malus_domestica	MD08G1050200.v1.1
prunus_persica	Prupe.1G398500_v2.0.a1
pyrus_communis	pycom08g04170 pycom15g04150
rosa_chinensis	RchiOBHm_Chr6g0299071
rosa_laevigata	RLG00000011463
rosa_multiflora	Rmu_sc0000981.1_g000009 Rmu_sc0007483.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169030
rosa_rugosa	Rorug06G0285000 Rorug06G0285100 Rorug06G0285200
rosa_samantha	Rh6AG396100 Rh6BG404700 Rh6CG410700 Rh6DG397300
rosa_wichuraiana	Rw6G034670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	234
AccII	CGCG	1 cut(s)	633
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	2 cut(s)	372, 766
AclWI	GGATC	5 cut(s)	88, 104, 117, 219, 232
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	29, 192
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	2 cut(s)	322, 423
AfiI	CCNNNNNNNGG	3 cut(s)	234, 307, 439
AflIII	ACRYGT	3 cut(s)	424, 492, 631
AgsI	TTSAA	3 cut(s)	34, 121, 499
AjnI	CCWGG	2 cut(s)	60, 252
AluBI	AGCT	3 cut(s)	458, 590, 771
AluI	AGCT	3 cut(s)	458, 590, 771
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	5 cut(s)	88, 104, 117, 219, 232
Aor13HI	TCCGGA	1 cut(s)	49
AoxI	GGCC	2 cut(s)	96, 600
ApeKI	GCWGC	3 cut(s)	260, 455, 768
ApoI	RAATTY	2 cut(s)	29, 192
AspS9I	GGNCC	2 cut(s)	4, 601
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	2 cut(s)	109, 224
BanII	GRGCYC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	2 cut(s)	372, 404
BauI	CACGAG	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	272, 467
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	2 cut(s)	62, 254
BcoDI	GTCTC	1 cut(s)	513
BfaI	CTAG	2 cut(s)	245, 738
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	4 cut(s)	261, 372, 456, 769
BlsI	GCNGC	4 cut(s)	262, 373, 457, 770
BmcAI	AGTACT	1 cut(s)	322
Bme1390I	CCNGG	2 cut(s)	62, 254
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 601
BmiI	GGNNCC	3 cut(s)	111, 226, 603
BmrFI	CCNGG	2 cut(s)	62, 254
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	163
BplI	GAGNNNNNCTC	4 cut(s)	192, 224, 307, 339
BsaAI	YACGTR	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	3 cut(s)	234, 307, 439
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	627
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	62, 254
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	3 cut(s)	234, 307, 439
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	273, 546
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	272, 467
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	2 cut(s)	98, 602
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	2 cut(s)	283, 552
BslI	CCNNNNNNNGG	3 cut(s)	234, 307, 439
BsmAI	GTCTC	1 cut(s)	513
BsmFI	GGGAC	2 cut(s)	283, 552
BsnI	GGCC	2 cut(s)	98, 602
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	80, 109, 224, 382
BspACI	CCGC	2 cut(s)	372, 766
BspANI	GGCC	2 cut(s)	98, 602
BspCNI	CTCAG	2 cut(s)	274, 545
BspEI	TCCGGA	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	633
BspLI	GGNNCC	3 cut(s)	111, 226, 603
BspPI	GGATC	5 cut(s)	88, 104, 117, 219, 232
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	4 cut(s)	80, 109, 224, 382
BssSI	CACGAG	1 cut(s)	551
Bst2BI	CACGAG	1 cut(s)	551
Bst2UI	CCWGG	2 cut(s)	62, 254
Bst6I	CTCTTC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	282, 532
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	633
BstKTI	GATC	4 cut(s)	83, 112, 227, 385
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	4 cut(s)	80, 109, 224, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 461
BstNI	CCWGG	2 cut(s)	62, 254
BstNSI	RCATGY	3 cut(s)	358, 362, 496
BstSCI	CCNGG	2 cut(s)	60, 252
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	2 cut(s)	272, 467
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	3 cut(s)	109, 224, 382
BstXI	CCANNNNNNTGG	2 cut(s)	106, 612
BstYI	RGATCY	3 cut(s)	109, 224, 382
BsuRI	GGCC	2 cut(s)	98, 602
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	3 cut(s)	83, 223, 375
Cac8I	GCNNGC	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	4, 601
Csp6I	GTAC	2 cut(s)	321, 422
CviAII	CATG	4 cut(s)	355, 359, 493, 547
CviQI	GTAC	2 cut(s)	321, 422
DdeI	CTNAG	2 cut(s)	282, 532
DpnI	GATC	4 cut(s)	82, 111, 226, 384
DpnII	GATC	4 cut(s)	80, 109, 224, 382
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	76
Eco32I	GATATC	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	60, 252
EcoRV	GATATC	1 cut(s)	673
EcoT22I	ATGCAT	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	4 cut(s)	358, 362, 496, 550
FaqI	GGGAC	2 cut(s)	283, 552
FatI	CATG	4 cut(s)	354, 358, 492, 546
FauNDI	CATATG	1 cut(s)	212
Fnu4HI	GCNGC	4 cut(s)	261, 372, 456, 769
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	4 cut(s)	261, 372, 456, 769
FspBI	CTAG	2 cut(s)	245, 738
GluI	GCNGC	4 cut(s)	261, 372, 456, 769
HaeIII	GGCC	2 cut(s)	98, 602
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	4 cut(s)	358, 362, 496, 550
HinfI	GANTC	3 cut(s)	284, 296, 530
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	3 cut(s)	615, 642, 663
Hpy188I	TCNGA	4 cut(s)	271, 283, 310, 535
Hpy188III	TCNNGA	7 cut(s)	50, 107, 113, 179, 440, 553, 738
Hpy8I	GTNNAC	3 cut(s)	615, 642, 663
Hpy99I	CGWCG	1 cut(s)	685
HpyAV	CCTTC	3 cut(s)	83, 333, 403
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	7 cut(s)	137, 216, 260, 358, 455, 472, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 461
HpyF3I	CTNAG	2 cut(s)	282, 532
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	4 cut(s)	358, 362, 496, 550
Kpn2I	TCCGGA	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	80, 109, 224, 382
Lsp1109I	GCAGC	2 cut(s)	272, 467
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	2 cut(s)	245, 738
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	4 cut(s)	82, 111, 226, 384
MboI	GATC	4 cut(s)	80, 109, 224, 382
MboII	GAAGA	4 cut(s)	35, 168, 201, 392
MflI	RGATCY	3 cut(s)	109, 224, 382
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	4 cut(s)	29, 192, 304, 447
MluI	ACGCGT	1 cut(s)	631
MlyI	GAGTC	3 cut(s)	293, 305, 524
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	57, 304, 529, 549, 601, 643
Mph1103I	ATGCAT	1 cut(s)	360
MroI	TCCGGA	1 cut(s)	49
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	2 cut(s)	551, 699
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	62, 254
MvaI	CCWGG	2 cut(s)	62, 254
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	2 cut(s)	368, 461
NdeI	CATATG	1 cut(s)	212
NdeII	GATC	4 cut(s)	80, 109, 224, 382
NlaIII	CATG	4 cut(s)	358, 362, 496, 550
NlaIV	GGNNCC	3 cut(s)	111, 226, 603
NsiI	ATGCAT	1 cut(s)	360
NspI	RCATGY	3 cut(s)	358, 362, 496
PaeI	GCATGC	1 cut(s)	362
PciI	ACATGT	1 cut(s)	492
PflMI	CCANNNNNTGG	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	262, 373, 457, 770
PleI	GAGTC	3 cut(s)	292, 304, 524
PpsI	GAGTC	3 cut(s)	292, 304, 524
Ppu21I	YACGTR	1 cut(s)	425
PscI	ACATGT	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	60, 252
PspGI	CCWGG	2 cut(s)	60, 252
PspN4I	GGNNCC	3 cut(s)	111, 226, 603
PspPI	GGNCC	2 cut(s)	4, 601
PsrI	GAACNNNNNNTAC	2 cut(s)	420, 452
PsuI	RGATCY	3 cut(s)	109, 224, 382
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	2 cut(s)	322, 423
RsaNI	GTAC	2 cut(s)	321, 422
RseI	CAYNNNNRTG	2 cut(s)	551, 699
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	4 cut(s)	261, 372, 456, 769
Sau3AI	GATC	4 cut(s)	80, 109, 224, 382
Sau96I	GGNCC	2 cut(s)	4, 601
ScaI	AGTACT	1 cut(s)	322
SchI	GAGTC	3 cut(s)	293, 305, 524
ScrFI	CCNGG	2 cut(s)	62, 254
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	8 cut(s)	236, 427, 460, 592, 612, 654, 662, 773
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	551, 699
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	4 cut(s)	29, 192, 304, 447
SsiI	CCGC	2 cut(s)	372, 766
SspMI	CTAG	2 cut(s)	245, 738
StyD4I	CCNGG	2 cut(s)	60, 252
TaiI	ACGT	1 cut(s)	427
TasI	AATT	4 cut(s)	29, 192, 304, 447
TatI	WGTACW	1 cut(s)	320
TauI	GCSGC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	3 cut(s)	90, 223, 382
TseI	GCWGC	3 cut(s)	260, 455, 768
TspDTI	ATGAA	4 cut(s)	492, 644, 683, 715
TspRI	CASTG	3 cut(s)	90, 223, 382
Van91I	CCANNNNNTGG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	29, 192
XbaI	TCTAGA	1 cut(s)	737
XceI	RCATGY	3 cut(s)	358, 362, 496
XspI	CTAG	2 cut(s)	245, 738
ZrmI	AGTACT	1 cut(s)	322
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.