Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007483.1

Orthogroup ID

OG0008646

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3502

Gene Structure 3502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007483.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgaggaatgtctttgccactgtcaagcgtcaccgccatgccactctcctctcccaaactctatgccatgaagtttatgtggagaccataatacagaaatgcatacctttgggatgccacaagtttattgaaattggatggaaacaacacaatgggtctccatattactggctacagcgacattctttttccacgggtttcaccagcgtgcacggtgagagtccgtccgccgaatatgcaaagttgaggaaggagtcactagaaagtgaatttggacatgctcttggagctaatcgctccagaagtttttctgctgcctaccgttttggtccatttttggctttgtatagagcagcaattatttcgtttcacgtgttgaagctaacaatctggcaattctttgttcaagacataaggaaacgtgccatcaagtttcgtgaaactcttatccgcttgggacctttctatatcaagcttggtcaggctttgagcactaggccagatatactaccaactgaatactgccaagagcttgttaagttacaggatcaaatacccccatttccaacccctgtagctattaaatctattgaatcccagcttggagttcgtgtttcagacatttttgctgatattagcccacagcctattgctgcagcatccctagggcaggtctataaagctcacctgcactctggggagctggtagctgttaaagtacaaaggcctggcatgtcactttcattgacccttgatgccttgttattccatatgattgggggccaattaaagcgatttgccaaggcccgcaaagatctattagtggcagtgaatgagatggtgaggcacatgtttgatgaaattgattacattctagaggcaaaaaatgctgaacgttttgcttctctctatgcttcacatccacgtgatgagaaaaaggattatccaaatgctacagctgggaaaactcgtagacataaagaggcaaactgtataaaagtgccaaaaatatattgggaccttacccgtagggcagtgctgacaatggagtggattgatggaataaagcttacagatgaaattggcctaaagacggcctttctgaacagaaaagaactcattgaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

376

Amino Acids

42.98

Weight (kDa)

9.58

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24970 AT5G24970 AT5G24970
fragaria_vesca	FvH4_2g41400 FvH4_2g41400 FvH4_2g41400
malus_domestica	MD08G1050200.v1.1
prunus_persica	Prupe.1G398500_v2.0.a1
pyrus_communis	pycom08g04170 pycom15g04150
rosa_chinensis	RchiOBHm_Chr6g0299071
rosa_laevigata	RLG00000011463
rosa_multiflora	Rmu_sc0000981.1_g000009 Rmu_sc0007483.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169030
rosa_rugosa	Rorug06G0285000 Rorug06G0285100 Rorug06G0285200
rosa_samantha	Rh6AG396100 Rh6BG404700 Rh6CG410700 Rh6DG397300
rosa_wichuraiana	Rw6G034670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	696
Acc36I	ACCTGC	2 cut(s)	661, 696
AccI	GTMKAC	1 cut(s)	973
AciI	CCGC	4 cut(s)	34, 228, 451, 808
AclI	AACGTT	1 cut(s)	895
AclWI	GGATC	1 cut(s)	555
AcsI	RAATTY	1 cut(s)	269
AcvI	CACGTG	2 cut(s)	373, 926
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	2 cut(s)	670, 1093
AflIII	ACRYGT	2 cut(s)	372, 849
AgsI	TTSAA	4 cut(s)	131, 379, 407, 593
AjnI	CCWGG	1 cut(s)	727
AjuI	GAANNNNNNNTTGG	4 cut(s)	255, 287, 585, 617
AleI	CACNNNNGTG	1 cut(s)	206
Alw21I	GWGCWC	2 cut(s)	213, 494
Alw26I	GTCTC	2 cut(s)	77, 162
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	555
AoxI	GGCC	6 cut(s)	497, 725, 781, 804, 1084, 1095
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	4 cut(s)	314, 353, 653, 656
ApoI	RAATTY	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	307
AspA2I	CCTAGG	1 cut(s)	664
AspS9I	GGNCC	5 cut(s)	329, 458, 781, 805, 1018
AsuHPI	GGTGA	5 cut(s)	23, 193, 227, 677, 853
AvaII	GGWCC	3 cut(s)	329, 458, 1018
AvrII	CCTAGG	1 cut(s)	664
BaeGI	GKGCMC	1 cut(s)	213
BbrPI	CACGTG	2 cut(s)	373, 926
Bbv12I	GWGCWC	2 cut(s)	213, 494
BbvI	GCAGC	4 cut(s)	301, 365, 640, 668
BccI	CCATC	4 cut(s)	132, 434, 832, 1052
BceAI	ACGGC	1 cut(s)	1110
BcgI	CGANNNNNNTGC	2 cut(s)	345, 379
BciT130I	CCWGG	1 cut(s)	729
BcoDI	GTCTC	2 cut(s)	77, 162
BfaI	CTAG	4 cut(s)	260, 495, 665, 875
BfmI	CTRYAG	4 cut(s)	173, 573, 654, 954
BfuAI	ACCTGC	2 cut(s)	661, 696
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	4 cut(s)	315, 354, 654, 657
BlnI	CCTAGG	1 cut(s)	664
BlsI	GCNGC	4 cut(s)	316, 355, 655, 658
Bme1390I	CCNGG	1 cut(s)	729
Bme18I	GGWCC	3 cut(s)	329, 458, 1018
BmgT120I	GGNCC	5 cut(s)	329, 458, 781, 805, 1018
BmiI	GGNNCC	3 cut(s)	459, 782, 1019
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	3 cut(s)	104, 668, 745
BpmI	CTGGAG	1 cut(s)	283
BsaAI	YACGTR	2 cut(s)	373, 926
BsaI	GGTCTC	2 cut(s)	77, 162
BsaJI	CCNNGG	3 cut(s)	192, 664, 801
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	670, 1093
Bse1I	ACTGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	3 cut(s)	192, 664, 801
BseGI	GGATG	4 cut(s)	119, 143, 659, 919
BseLI	CCNNNNNNNGG	2 cut(s)	670, 1093
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	4 cut(s)	301, 365, 640, 668
BseYI	CCCAGC	2 cut(s)	597, 959
BsgI	GTGCAG	1 cut(s)	674
BshFI	GGCC	6 cut(s)	499, 727, 783, 806, 1086, 1097
BsiHKAI	GWGCWC	2 cut(s)	213, 494
BslFI	GGGAC	2 cut(s)	471, 1031
BslI	CCNNNNNNNGG	2 cut(s)	670, 1093
BsmAI	GTCTC	2 cut(s)	77, 162
BsmFI	GGGAC	2 cut(s)	471, 1031
BsnI	GGCC	6 cut(s)	499, 727, 783, 806, 1086, 1097
Bso31I	GGTCTC	2 cut(s)	77, 162
Bsp1286I	GDGCHC	2 cut(s)	213, 494
Bsp143I	GATC	2 cut(s)	547, 814
BspACI	CCGC	4 cut(s)	34, 228, 451, 808
BspANI	GGCC	6 cut(s)	499, 727, 783, 806, 1086, 1097
BspLI	GGNNCC	3 cut(s)	459, 782, 1019
BspMAI	CTGCAG	1 cut(s)	658
BspMI	ACCTGC	2 cut(s)	661, 696
BspPI	GGATC	1 cut(s)	555
BspTNI	GGTCTC	2 cut(s)	77, 162
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	3 cut(s)	192, 664, 801
BssMI	GATC	2 cut(s)	547, 814
BssT1I	CCWWGG	2 cut(s)	664, 801
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	4 cut(s)	22, 215, 323, 992
BstAPI	GCANNNNNTGC	1 cut(s)	887
BstBAI	YACGTR	2 cut(s)	373, 926
BstC8I	GCNNGC	2 cut(s)	209, 808
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	668
BstF5I	GGATG	4 cut(s)	119, 143, 659, 919
BstKTI	GATC	2 cut(s)	550, 817
BstMAI	GTCTC	2 cut(s)	77, 162
BstMBI	GATC	2 cut(s)	547, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 287, 887
BstNI	CCWGG	1 cut(s)	729
BstNSI	RCATGY	3 cut(s)	281, 736, 853
BstSCI	CCNGG	1 cut(s)	727
BstSFI	CTRYAG	4 cut(s)	173, 573, 654, 954
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	4 cut(s)	301, 365, 640, 668
BstX2I	RGATCY	1 cut(s)	814
BstXI	CCANNNNNNTGG	2 cut(s)	168, 776
BstYI	RGATCY	1 cut(s)	814
BsuRI	GGCC	6 cut(s)	499, 727, 783, 806, 1086, 1097
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	4 cut(s)	119, 143, 659, 919
BtsI	GCAGTG	2 cut(s)	834, 1041
BtsIMutI	CAGTG	3 cut(s)	18, 834, 1041
BveI	ACCTGC	2 cut(s)	661, 696
Cac8I	GCNNGC	2 cut(s)	209, 808
Cfr13I	GGNCC	5 cut(s)	329, 458, 781, 805, 1018
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	719
CviAII	CATG	5 cut(s)	38, 68, 278, 733, 850
CviQI	GTAC	1 cut(s)	719
DpnI	GATC	2 cut(s)	549, 816
DpnII	GATC	2 cut(s)	547, 814
EciI	GGCGGA	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	664, 801
Eco147I	AGGCCT	1 cut(s)	727
Eco31I	GGTCTC	2 cut(s)	77, 162
Eco47I	GGWCC	3 cut(s)	329, 458, 1018
Eco72I	CACGTG	2 cut(s)	373, 926
EcoNI	CCTNNNNNAGG	1 cut(s)	668
EcoO109I	RGGNCCY	2 cut(s)	458, 1018
EcoRII	CCWGG	1 cut(s)	727
EcoT14I	CCWWGG	2 cut(s)	664, 801
EcoT22I	ATGCAT	1 cut(s)	104
ErhI	CCWWGG	2 cut(s)	664, 801
FaeI	CATG	5 cut(s)	41, 71, 281, 736, 853
FalI	AAGNNNNNCTT	2 cut(s)	1082, 1114
FaqI	GGGAC	2 cut(s)	471, 1031
FatI	CATG	5 cut(s)	37, 67, 277, 732, 849
FauI	CCCGC	1 cut(s)	815
FauNDI	CATATG	1 cut(s)	771
FblI	GTMKAC	1 cut(s)	973
Fnu4HI	GCNGC	4 cut(s)	315, 354, 654, 657
FokI	GGATG	4 cut(s)	126, 150, 646, 906
Fsp4HI	GCNGC	4 cut(s)	315, 354, 654, 657
FspBI	CTAG	4 cut(s)	260, 495, 665, 875
GluI	GCNGC	4 cut(s)	315, 354, 654, 657
GsaI	CCCAGC	2 cut(s)	601, 963
GsuI	CTGGAG	1 cut(s)	283
HaeIII	GGCC	6 cut(s)	499, 727, 783, 806, 1086, 1097
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	5 cut(s)	41, 71, 281, 736, 853
HindIII	AAGCTT	2 cut(s)	473, 1067
HinfI	GANTC	3 cut(s)	220, 254, 593
HphI	GGTGA	5 cut(s)	23, 193, 227, 677, 853
Hpy166II	GTNNAC	2 cut(s)	211, 974
Hpy188I	TCNGA	2 cut(s)	619, 1104
Hpy188III	TCNNGA	4 cut(s)	300, 407, 437, 875
Hpy8I	GTNNAC	2 cut(s)	211, 974
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	4 cut(s)	22, 215, 323, 992
HpyCH4IV	ACGT	4 cut(s)	372, 421, 895, 925
HpyCH4V	TGCA	5 cut(s)	102, 211, 239, 656, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 287, 887
HpySE526I	ACGT	4 cut(s)	372, 421, 895, 925
Hsp92II	CATG	5 cut(s)	41, 71, 281, 736, 853
Kzo9I	GATC	2 cut(s)	547, 814
LmnI	GCTCC	3 cut(s)	287, 302, 700
Lsp1109I	GCAGC	4 cut(s)	301, 365, 640, 668
LweI	GCATC	3 cut(s)	104, 668, 745
MaeI	CTAG	4 cut(s)	260, 495, 665, 875
MaeII	ACGT	4 cut(s)	372, 421, 895, 925
MaeIII	GTNAC	4 cut(s)	29, 255, 540, 735
MalI	GATC	2 cut(s)	549, 816
MboI	GATC	2 cut(s)	547, 814
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	2 cut(s)	213, 494
MluCI	AATT	7 cut(s)	132, 269, 357, 395, 785, 861, 1080
MlyI	GAGTC	2 cut(s)	229, 263
MmeI	TCCRAC	1 cut(s)	590
MnlI	CCTC	5 cut(s)	59, 240, 837, 871, 976
Mph1103I	ATGCAT	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	307
MseI	TTAA	4 cut(s)	537, 582, 714, 788
MslI	CAYNNNNRTG	3 cut(s)	36, 206, 924
MspA1I	CMGCKG	1 cut(s)	959
MspR9I	CCNGG	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	3 cut(s)	236, 287, 887
NdeI	CATATG	1 cut(s)	771
NdeII	GATC	2 cut(s)	547, 814
NlaIII	CATG	5 cut(s)	41, 71, 281, 736, 853
NlaIV	GGNNCC	3 cut(s)	459, 782, 1019
NmuCI	GTSAC	3 cut(s)	29, 255, 735
NsiI	ATGCAT	1 cut(s)	104
NspI	RCATGY	3 cut(s)	281, 736, 853
OliI	CACNNNNGTG	1 cut(s)	206
PaqCI	CACCTGC	1 cut(s)	696
PceI	AGGCCT	1 cut(s)	727
PciI	ACATGT	1 cut(s)	849
PdmI	GAANNNNTTC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	593
PkrI	GCNGC	4 cut(s)	316, 355, 655, 658
PleI	GAGTC	2 cut(s)	228, 262
PmaCI	CACGTG	2 cut(s)	373, 926
PmlI	CACGTG	2 cut(s)	373, 926
PpsI	GAGTC	2 cut(s)	228, 262
Ppu21I	YACGTR	2 cut(s)	373, 926
PpuMI	RGGWCCY	2 cut(s)	458, 1018
PscI	ACATGT	1 cut(s)	849
Psp1406I	AACGTT	1 cut(s)	895
Psp5II	RGGWCCY	2 cut(s)	458, 1018
Psp6I	CCWGG	1 cut(s)	727
PspCI	CACGTG	2 cut(s)	373, 926
PspFI	CCCAGC	2 cut(s)	597, 959
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	3 cut(s)	459, 782, 1019
PspPI	GGNCC	5 cut(s)	329, 458, 781, 805, 1018
PspPPI	RGGWCCY	2 cut(s)	458, 1018
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	814
PvuII	CAGCTG	1 cut(s)	959
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
RseI	CAYNNNNRTG	3 cut(s)	36, 206, 924
SaqAI	TTAA	4 cut(s)	537, 582, 714, 788
SatI	GCNGC	4 cut(s)	315, 354, 654, 657
Sau3AI	GATC	2 cut(s)	547, 814
Sau96I	GGNCC	5 cut(s)	329, 458, 781, 805, 1018
SchI	GAGTC	2 cut(s)	229, 263
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	2 cut(s)	213, 494
SfaNI	GCATC	3 cut(s)	104, 668, 745
SfcI	CTRYAG	4 cut(s)	173, 573, 654, 954
SinI	GGWCC	3 cut(s)	329, 458, 1018
SmiMI	CAYNNNNRTG	3 cut(s)	36, 206, 924
Sse9I	AATT	7 cut(s)	132, 269, 357, 395, 785, 861, 1080
SseBI	AGGCCT	1 cut(s)	727
SsiI	CCGC	4 cut(s)	34, 228, 451, 808
SspMI	CTAG	4 cut(s)	260, 495, 665, 875
StuI	AGGCCT	1 cut(s)	727
StyD4I	CCNGG	1 cut(s)	727
StyI	CCWWGG	2 cut(s)	664, 801
TaaI	ACNGT	4 cut(s)	22, 215, 323, 992
TaiI	ACGT	4 cut(s)	375, 424, 898, 928
TasI	AATT	7 cut(s)	132, 269, 357, 395, 785, 861, 1080
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	4 cut(s)	537, 582, 714, 788
Tru9I	TTAA	4 cut(s)	537, 582, 714, 788
TscAI	CASTG	3 cut(s)	25, 834, 1041
TseFI	GTSAC	3 cut(s)	29, 255, 735
TseI	GCWGC	4 cut(s)	314, 353, 653, 656
Tsp45I	GTSAC	3 cut(s)	29, 255, 735
TspDTI	ATGAA	4 cut(s)	84, 732, 873, 1092
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	3 cut(s)	25, 834, 1041
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	3 cut(s)	329, 458, 1018
XagI	CCTNNNNNAGG	1 cut(s)	668
XapI	RAATTY	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	874
XceI	RCATGY	3 cut(s)	281, 736, 853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1011
XmaJI	CCTAGG	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	973
XmnI	GAANNNNTTC	1 cut(s)	307
XspI	CTAG	4 cut(s)	260, 495, 665, 875
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.