Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008646

Physical Location & Seq

Genomic Coordinates Forward (+)

43330702 .. 43331280

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAACCCTTCCCCAATTCTAGTGCAGGATGCTGGGGATGAAAAACCCTGCACCAGTGGCCATGGAGTTGTGGTTGCTGCTGCTGCTGCTGTGGCTCCTGAGTGGTGCTCAAAGAAAATAACAGGCTTGATCAAGGACATTACATTATGTGATCCGGACAAGCTTGATGTTGGGATTCCATCTGGATCACAAAAAAGTGGTTATGAAAGAGTATGCACACAGGGAGTTGTGGTTGCTGCTGCTACTAAGGAGCCTCCAAAATGTTGCTCAGGCTTGATCAAGGTCATTACAACTGATTCTCAAAAGTGCGATGCGGTGAATTCTTCTGGATCAAGAAAATCTGGCGGTGAAAGAGCACGCACCAGTGTACACCAGTGTAATGGAAGGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

130

Amino Acids

13.35

Weight (kDa)

8.44

Isoelectric Point (pI)

26.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24970 AT5G24970 AT5G24970
fragaria_vesca	FvH4_2g41400 FvH4_2g41400 FvH4_2g41400
malus_domestica	MD08G1050200.v1.1
prunus_persica	Prupe.1G398500_v2.0.a1
pyrus_communis	pycom08g04170 pycom15g04150
rosa_chinensis	RchiOBHm_Chr6g0299071
rosa_laevigata	RLG00000011463
rosa_multiflora	Rmu_sc0000981.1_g000009 Rmu_sc0007483.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169030
rosa_rugosa	Rorug06G0285000 Rorug06G0285100 Rorug06G0285200
rosa_samantha	Rh6AG396100 Rh6BG404700 Rh6CG410700 Rh6DG397300
rosa_wichuraiana	Rw6G034670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	154
AciI	CCGC	2 cut(s)	314, 345
AclWI	GGATC	3 cut(s)	146, 193, 337
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	1 cut(s)	369
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw21I	GWGCWC	2 cut(s)	110, 358
AlwI	GGATC	3 cut(s)	146, 193, 337
Aor13HI	TCCGGA	1 cut(s)	154
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	6 cut(s)	77, 80, 83, 86, 236, 239
ApoI	RAATTY	1 cut(s)	319
AsuHPI	GGTGA	2 cut(s)	328, 359
BalI	TGGCCA	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	110, 358
BbvI	GCAGC	6 cut(s)	64, 67, 70, 73, 223, 226
BccI	CCATC	1 cut(s)	187
BclI	TGATCA	2 cut(s)	129, 276
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	6 cut(s)	78, 81, 84, 87, 237, 240
BlsI	GCNGC	6 cut(s)	79, 82, 85, 88, 238, 241
BmiI	GGNNCC	2 cut(s)	96, 252
BmsI	GCATC	2 cut(s)	19, 301
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
Bpu10I	CCTNAGC	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	154
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 216, 246
Bse1I	ACTGG	3 cut(s)	54, 363, 373
BseAI	TCCGGA	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	34, 43
BseMII	CTCAG	2 cut(s)	90, 282
BseNI	ACTGG	3 cut(s)	54, 363, 373
BseXI	GCAGC	6 cut(s)	64, 67, 70, 73, 223, 226
BseYI	CCCAGC	1 cut(s)	32
BsgI	GTGCAG	2 cut(s)	34, 44
BshFI	GGCC	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	110, 358
BsiSI	CCGG	1 cut(s)	155
BsnI	GGCC	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	110, 358
Bsp13I	TCCGGA	1 cut(s)	154
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	5 cut(s)	129, 151, 185, 276, 329
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	2 cut(s)	314, 345
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	91, 281
BspEI	TCCGGA	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	96, 252
BspPI	GGATC	3 cut(s)	146, 193, 337
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	3 cut(s)	54, 363, 373
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	5 cut(s)	129, 151, 185, 276, 329
BssT1I	CCWWGG	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	3 cut(s)	99, 246, 268
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	34, 43
BstKTI	GATC	5 cut(s)	132, 154, 188, 279, 332
BstMBI	GATC	5 cut(s)	129, 151, 185, 276, 329
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 83, 86, 92
BstV1I	GCAGC	6 cut(s)	64, 67, 70, 73, 223, 226
BstXI	CCANNNNNNTGG	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	34, 43
BtsIMutI	CAGTG	3 cut(s)	61, 370, 380
Cac8I	GCNNGC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	7 cut(s)	60, 95, 126, 163, 253, 273, 390
CviKI_1	RGCY	7 cut(s)	60, 95, 126, 163, 253, 273, 390
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	3 cut(s)	99, 246, 268
DpnI	GATC	5 cut(s)	131, 153, 187, 278, 331
DpnII	GATC	5 cut(s)	129, 151, 185, 276, 329
EaeI	YGGCCR	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	1 cut(s)	65
FaiI	YATR	4 cut(s)	63, 148, 204, 214
FatI	CATG	1 cut(s)	61
FbaI	TGATCA	2 cut(s)	129, 276
Fnu4HI	GCNGC	6 cut(s)	78, 81, 84, 87, 237, 240
FokI	GGATG	2 cut(s)	41, 50
Fsp4HI	GCNGC	6 cut(s)	78, 81, 84, 87, 237, 240
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	6 cut(s)	78, 81, 84, 87, 237, 240
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	175, 296
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	2 cut(s)	328, 359
Hpy166II	GTNNAC	2 cut(s)	368, 370
Hpy188III	TCNNGA	5 cut(s)	98, 155, 183, 327, 333
Hpy8I	GTNNAC	2 cut(s)	368, 370
HpyAV	CCTTC	2 cut(s)	18, 378
HpyCH4V	TGCA	3 cut(s)	25, 51, 216
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 83, 86, 92
HpyF3I	CTNAG	3 cut(s)	99, 246, 268
Hsp92II	CATG	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	154
Ksp22I	TGATCA	2 cut(s)	129, 276
Kzo9I	GATC	5 cut(s)	129, 151, 185, 276, 329
LmnI	GCTCC	2 cut(s)	100, 250
Lsp1109I	GCAGC	6 cut(s)	64, 67, 70, 73, 223, 226
LweI	GCATC	2 cut(s)	19, 301
MaeI	CTAG	1 cut(s)	20
MalI	GATC	5 cut(s)	131, 153, 187, 278, 331
MboI	GATC	5 cut(s)	129, 151, 185, 276, 329
MboII	GAAGA	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	110, 358
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	2 cut(s)	15, 319
MluNI	TGGCCA	1 cut(s)	60
MnlI	CCTC	1 cut(s)	264
Mox20I	TGGCCA	1 cut(s)	60
MroI	TCCGGA	1 cut(s)	154
MscI	TGGCCA	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	60
MspI	CCGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	4 cut(s)	57, 83, 86, 92
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	5 cut(s)	129, 151, 185, 276, 329
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	2 cut(s)	96, 252
PfeI	GAWTC	2 cut(s)	175, 296
PkrI	GCNGC	6 cut(s)	79, 82, 85, 88, 238, 241
PspFI	CCCAGC	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	96, 252
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SatI	GCNGC	6 cut(s)	78, 81, 84, 87, 237, 240
Sau3AI	GATC	5 cut(s)	129, 151, 185, 276, 329
SduI	GDGCHC	2 cut(s)	110, 358
SetI	ASST	2 cut(s)	165, 285
SfaNI	GCATC	2 cut(s)	19, 301
Sse9I	AATT	2 cut(s)	15, 319
SsiI	CCGC	2 cut(s)	314, 345
SspMI	CTAG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	61
TasI	AATT	2 cut(s)	15, 319
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	2 cut(s)	175, 296
TscAI	CASTG	3 cut(s)	61, 370, 380
TseI	GCWGC	6 cut(s)	77, 80, 83, 86, 236, 239
TspDTI	ATGAA	3 cut(s)	17, 54, 219
TspRI	CASTG	3 cut(s)	61, 370, 380
XapI	RAATTY	1 cut(s)	319
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.