Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008646

Physical Location & Seq

Genomic Coordinates Reverse (-)

43357896 .. 43359206

Gene Structure 1311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0285200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGACGCTGCCATGGTCGTCCTACCAAAACTTACGAGAACTGAGGTCGTTCATGAACACGACCAAAGTTTTCTCCATGGTCGACCGATGCTTTCAGTTGATTTTGTTTTTGCACCAACAAGCCATACAATACCCGAAGAAGGGTGGTTTGAAGTTGAAGATTAAGATTGCTAATCCTTCTCTGAGGAGGTTGATTAGTGGTGCGGTGGCCGGAGCGGTGTCGAGGACGGCGGTGGCGCCGTTGGAGACTATAAGGACGCATTTGATGGTTGGGAGTAGTGGGAATTCCACTACTGAGGTGTTTACTGATATTATGAAGGTGGATGGGTGGACGGGATTGTTTAGGGGGAATTTGGTCAATGTGATTCGGGTTGCGCCGAGCAAGGCAATAGAGCTGTTTGCTTATGATACAGTTAATAAGCACCTGTCGCCCAAAGCTGGAGAACAGTCGAAACTTCCAATTCCTGCCTCATTAGTTGCAGGTGCCTGTGCTGGAGTGAGCTCCACACTTATCACATACCCCCTTGAGTTACTAAAAACTCGGCTAACCATTCAGAGGGGCGTATATAATGGCCTTCTTGATGCATTTGTAAAAATTATTCGAGAAGAGGGACCTGCAGAGCTCTATAGAGGTCTTGCACCCAGTCTTATTGGAGTCATTCCTTATGCTGCCACAAATTACTGTGCTTATGACACATTACGGAAAGCCTATCGTAAGATTTTCAAGCAGGAGAAGATTGGGAACATTCAGACCCTTTTAATTGGATCAGCAGCTGGTGCTATTTCAAGTACCGCAACTTTCCCTCTTGAAGTAGCTCGCAAACATATGCAGGTGGGGGCCGTGGGTGGAAGGCAGTATAATGATGTGATTCATGCCCTCGCAAGCATACTTGAACATGAAGGTATTGCTGGTTTATACAGAGGGCTCGGGCCTAGCTGCATGAAGTTGGTGCCTGCAGCAGGGATTTCTTTCATGTGCTACGAAGCAATGAAGAAGATACTGGTAGAGGATGATGAGGAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

341

Amino Acids

37.14

Weight (kDa)

9.5

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	59 - 143	1.8e-21	Mitochondrial carrier protein
Mito_carr	PF00153	151 - 239	8.2e-25	Mitochondrial carrier protein
Mito_carr	PF00153	247 - 336	1.6e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24970 AT5G24970 AT5G24970
fragaria_vesca	FvH4_2g41400 FvH4_2g41400 FvH4_2g41400
malus_domestica	MD08G1050200.v1.1
prunus_persica	Prupe.1G398500_v2.0.a1
pyrus_communis	pycom08g04170 pycom15g04150
rosa_chinensis	RchiOBHm_Chr6g0299071
rosa_laevigata	RLG00000011463
rosa_multiflora	Rmu_sc0000981.1_g000009 Rmu_sc0007483.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169030
rosa_rugosa	Rorug06G0285000 Rorug06G0285100 Rorug06G0285200
rosa_samantha	Rh6AG396100 Rh6BG404700 Rh6CG410700 Rh6DG397300
rosa_wichuraiana	Rw6G034670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	470, 820
Acc36I	ACCTGC	3 cut(s)	470, 622, 820
AccB1I	GGYRCC	3 cut(s)	235, 482, 949
AccBSI	CCGCTC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	4 cut(s)	203, 215, 230, 792
AclWI	GGATC	1 cut(s)	772
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	283, 349
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	1 cut(s)	790
AfiI	CCNNNNNNNGG	5 cut(s)	139, 140, 437, 555, 959
AgsI	TTSAA	6 cut(s)	151, 157, 724, 786, 809, 893
AluBI	AGCT	7 cut(s)	394, 437, 501, 622, 773, 815, 936
AluI	AGCT	7 cut(s)	394, 437, 501, 622, 773, 815, 936
Alw21I	GWGCWC	2 cut(s)	503, 624
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	772
AlwNI	CAGNNNCTG	1 cut(s)	773
Ama87I	CYCGRG	1 cut(s)	926
AoxI	GGCC	4 cut(s)	207, 571, 837, 929
ApeKI	GCWGC	5 cut(s)	7, 668, 770, 936, 956
ApoI	RAATTY	2 cut(s)	283, 349
AspLEI	GCGC	2 cut(s)	238, 376
AspS9I	GGNCC	3 cut(s)	611, 837, 929
AvaI	CYCGRG	1 cut(s)	926
AvaII	GGWCC	1 cut(s)	611
BanI	GGYRCC	3 cut(s)	235, 482, 949
BanII	GRGCYC	3 cut(s)	503, 624, 927
Bbv12I	GWGCWC	2 cut(s)	503, 624
BbvI	GCAGC	4 cut(s)	655, 782, 923, 968
BccI	CCATC	2 cut(s)	259, 317
BceAI	ACGGC	3 cut(s)	223, 243, 824
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	933
BfmI	CTRYAG	3 cut(s)	615, 625, 954
BfoI	RGCGCY	1 cut(s)	239
BfuAI	ACCTGC	3 cut(s)	470, 622, 820
BisI	GCNGC	5 cut(s)	8, 669, 771, 937, 957
BlsI	GCNGC	5 cut(s)	9, 670, 772, 938, 958
Bme18I	GGWCC	1 cut(s)	611
BmeT110I	CYCGRG	1 cut(s)	926
BmgT120I	GGNCC	3 cut(s)	611, 837, 929
BmiI	GGNNCC	5 cut(s)	237, 484, 612, 838, 951
BmrI	ACTGGG	1 cut(s)	636
BmsI	GCATC	2 cut(s)	77, 571
BmuI	ACTGGG	1 cut(s)	636
BpmI	CTGGAG	2 cut(s)	459, 513
BpuEI	CTTGAG	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	11, 75, 840
Bsc4I	CCNNNNNNNGG	5 cut(s)	139, 140, 437, 555, 959
Bse1I	ACTGG	2 cut(s)	642, 1005
Bse3DI	GCAATG	1 cut(s)	993
BseDI	CCNNGG	3 cut(s)	11, 75, 840
BseGI	GGATG	2 cut(s)	328, 1015
BseLI	CCNNNNNNNGG	5 cut(s)	139, 140, 437, 555, 959
BseMI	GCAATG	1 cut(s)	993
BseMII	CTCAG	3 cut(s)	32, 173, 285
BseNI	ACTGG	2 cut(s)	642, 1005
BseRI	GAGGAG	1 cut(s)	199
BseXI	GCAGC	4 cut(s)	655, 782, 923, 968
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	4 cut(s)	209, 573, 839, 931
BshNI	GGYRCC	3 cut(s)	235, 482, 949
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	2 cut(s)	503, 624
BsiHKCI	CYCGRG	1 cut(s)	926
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	5 cut(s)	139, 140, 437, 555, 959
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	4 cut(s)	209, 573, 839, 931
BsoBI	CYCGRG	1 cut(s)	926
Bsp1286I	GDGCHC	3 cut(s)	503, 624, 927
Bsp143I	GATC	1 cut(s)	764
Bsp19I	CCATGG	2 cut(s)	11, 75
BspACI	CCGC	4 cut(s)	203, 215, 230, 792
BspANI	GGCC	4 cut(s)	209, 573, 839, 931
BspCNI	CTCAG	3 cut(s)	33, 174, 286
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	5 cut(s)	237, 484, 612, 838, 951
BspMAI	CTGCAG	2 cut(s)	619, 958
BspMI	ACCTGC	3 cut(s)	470, 622, 820
BspPI	GGATC	1 cut(s)	772
BspT107I	GGYRCC	3 cut(s)	235, 482, 949
BsrBI	CCGCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	993
BsrI	ACTGG	2 cut(s)	642, 1005
BssECI	CCNNGG	3 cut(s)	11, 75, 840
BssMI	GATC	1 cut(s)	764
BssNI	GRCGYC	1 cut(s)	236
BssT1I	CCWWGG	2 cut(s)	11, 75
Bst4CI	ACNGT	3 cut(s)	412, 447, 683
Bst6I	CTCTTC	1 cut(s)	600
BstACI	GRCGYC	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	3 cut(s)	817, 883, 954
BstDEI	CTNAG	3 cut(s)	41, 182, 294
BstDSI	CCRYGG	3 cut(s)	11, 75, 840
BstENI	CCTNNNNNAGG	1 cut(s)	957
BstF5I	GGATG	2 cut(s)	328, 1015
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	238, 376
BstKTI	GATC	1 cut(s)	767
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	764
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	427, 776
BstSFI	CTRYAG	3 cut(s)	615, 625, 954
BstV1I	GCAGC	4 cut(s)	655, 782, 923, 968
BsuRI	GGCC	4 cut(s)	209, 573, 839, 931
BtgI	CCRYGG	3 cut(s)	11, 75, 840
BtsCI	GGATG	2 cut(s)	328, 1015
BveI	ACCTGC	3 cut(s)	470, 622, 820
Cac8I	GCNNGC	3 cut(s)	817, 883, 954
CaiI	CAGNNNCTG	1 cut(s)	773
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	2 cut(s)	238, 376
Cfr13I	GGNCC	3 cut(s)	611, 837, 929
CseI	GACGC	2 cut(s)	13, 265
Csp6I	GTAC	1 cut(s)	789
CviAII	CATG	7 cut(s)	12, 52, 76, 872, 896, 940, 973
CviQI	GTAC	1 cut(s)	789
DdeI	CTNAG	3 cut(s)	41, 182, 294
DinI	GGCGCC	1 cut(s)	237
DpnI	GATC	1 cut(s)	766
DpnII	GATC	1 cut(s)	764
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Ecl136II	GAGCTC	2 cut(s)	501, 622
Eco130I	CCWWGG	2 cut(s)	11, 75
Eco24I	GRGCYC	3 cut(s)	503, 624, 927
Eco47I	GGWCC	1 cut(s)	611
Eco53kI	GAGCTC	2 cut(s)	501, 622
Eco88I	CYCGRG	1 cut(s)	926
EcoICRI	GAGCTC	2 cut(s)	501, 622
EcoNI	CCTNNNNNAGG	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	11, 75
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	3 cut(s)	503, 624, 927
EgeI	GGCGCC	1 cut(s)	237
EheI	GGCGCC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	11, 75
FaeI	CATG	7 cut(s)	15, 55, 79, 875, 899, 943, 976
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	7 cut(s)	11, 51, 75, 871, 895, 939, 972
FauNDI	CATATG	1 cut(s)	825
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	5 cut(s)	8, 669, 771, 937, 957
FokI	GGATG	2 cut(s)	335, 1022
FriOI	GRGCYC	3 cut(s)	503, 624, 927
Fsp4HI	GCNGC	5 cut(s)	8, 669, 771, 937, 957
FspBI	CTAG	1 cut(s)	933
GlaI	GCGC	2 cut(s)	237, 375
GluI	GCNGC	5 cut(s)	8, 669, 771, 937, 957
GsuI	CTGGAG	2 cut(s)	459, 513
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	4 cut(s)	209, 573, 839, 931
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	2 cut(s)	13, 265
HhaI	GCGC	2 cut(s)	238, 376
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	7 cut(s)	15, 55, 79, 875, 899, 943, 976
Hin6I	GCGC	2 cut(s)	236, 374
HinP1I	GCGC	2 cut(s)	236, 374
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	364, 654, 868
HpaII	CCGG	1 cut(s)	210
Hpy166II	GTNNAC	3 cut(s)	82, 303, 330
Hpy188I	TCNGA	3 cut(s)	183, 555, 750
Hpy188III	TCNNGA	4 cut(s)	52, 578, 602, 806
Hpy8I	GTNNAC	3 cut(s)	82, 303, 330
HpyAV	CCTTC	6 cut(s)	133, 186, 310, 584, 843, 893
HpyCH4III	ACNGT	3 cut(s)	412, 447, 683
HpyCH4V	TGCA	8 cut(s)	112, 479, 584, 617, 638, 829, 939, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	427, 776
HpyF3I	CTNAG	3 cut(s)	41, 182, 294
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	7 cut(s)	15, 55, 79, 875, 899, 943, 976
HspAI	GCGC	2 cut(s)	236, 374
KasI	GGCGCC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	764
LmnI	GCTCC	2 cut(s)	212, 506
Lsp1109I	GCAGC	4 cut(s)	655, 782, 923, 968
LweI	GCATC	2 cut(s)	77, 571
MaeI	CTAG	1 cut(s)	933
MaeIII	GTNAC	1 cut(s)	528
MalI	GATC	1 cut(s)	766
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	1 cut(s)	764
MboII	GAAGA	6 cut(s)	148, 169, 617, 745, 1003, 1006
MhlI	GDGCHC	3 cut(s)	503, 624, 927
MluCI	AATT	6 cut(s)	283, 349, 459, 594, 676, 759
Mly113I	GGCGCC	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	663
MmeI	TCCRAC	1 cut(s)	222
Mph1103I	ATGCAT	1 cut(s)	586
MseI	TTAA	3 cut(s)	162, 414, 758
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	427, 776
NarI	GGCGCC	1 cut(s)	236
NcoI	CCATGG	2 cut(s)	11, 75
NdeI	CATATG	1 cut(s)	825
NdeII	GATC	1 cut(s)	764
NlaIII	CATG	7 cut(s)	15, 55, 79, 875, 899, 943, 976
NlaIV	GGNNCC	5 cut(s)	237, 484, 612, 838, 951
NmeAIII	GCCGAG	2 cut(s)	402, 520
NsiI	ATGCAT	1 cut(s)	586
PagI	TCATGA	1 cut(s)	51
PaqCI	CACCTGC	2 cut(s)	470, 820
PfeI	GAWTC	2 cut(s)	364, 868
PkrI	GCNGC	5 cut(s)	9, 670, 772, 938, 958
PleI	GAGTC	1 cut(s)	662
PluTI	GGCGCC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	662
PpuMI	RGGWCCY	1 cut(s)	611
Psp124BI	GAGCTC	2 cut(s)	503, 624
Psp5II	RGGWCCY	1 cut(s)	611
PspN4I	GGNNCC	5 cut(s)	237, 484, 612, 838, 951
PspPI	GGNCC	3 cut(s)	611, 837, 929
PspPPI	RGGWCCY	1 cut(s)	611
PstI	CTGCAG	2 cut(s)	619, 958
PstNI	CAGNNNCTG	1 cut(s)	773
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	1 cut(s)	790
RsaNI	GTAC	1 cut(s)	789
SacI	GAGCTC	2 cut(s)	503, 624
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	162, 414, 758
SatI	GCNGC	5 cut(s)	8, 669, 771, 937, 957
Sau3AI	GATC	1 cut(s)	764
Sau96I	GGNCC	3 cut(s)	611, 837, 929
SchI	GAGTC	1 cut(s)	663
SduI	GDGCHC	3 cut(s)	503, 624, 927
SfaNI	GCATC	2 cut(s)	77, 571
SfcI	CTRYAG	3 cut(s)	615, 625, 954
SfoI	GGCGCC	1 cut(s)	237
SinI	GGWCC	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	6 cut(s)	283, 349, 459, 594, 676, 759
SsiI	CCGC	4 cut(s)	203, 215, 230, 792
SspDI	GGCGCC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	933
SstI	GAGCTC	2 cut(s)	503, 624
StyI	CCWWGG	2 cut(s)	11, 75
TaaI	ACNGT	3 cut(s)	412, 447, 683
TaqI	TCGA	4 cut(s)	81, 221, 449, 601
TaqII	GACCGA	1 cut(s)	99
TasI	AATT	6 cut(s)	283, 349, 459, 594, 676, 759
TfiI	GAWTC	2 cut(s)	364, 868
Tru1I	TTAA	3 cut(s)	162, 414, 758
Tru9I	TTAA	3 cut(s)	162, 414, 758
TseI	GCWGC	5 cut(s)	7, 668, 770, 936, 956
TspDTI	ATGAA	8 cut(s)	40, 68, 329, 860, 912, 956, 961, 1004
TspGWI	ACGGA	1 cut(s)	715
VpaK11BI	GGWCC	1 cut(s)	611
XagI	CCTNNNNNAGG	1 cut(s)	957
XapI	RAATTY	2 cut(s)	283, 349
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	933
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.