Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001089.1

Orthogroup ID

OG0016829

Physical Location & Seq

Genomic Coordinates Reverse (-)

98388 .. 100223

Gene Structure 1836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgcatcatccacttccgattatgcagtataagagagttgtggatcttcataacttgctcggaggagactcgaatcagactagtgtgcgtgggatcagtgatgagaatgaacgagatcgctggggaaagaagcctatgaacactgacgcaagcagaggtaagaaggagttgaagcgcctgagggttttgaggatggcagtgatttacatgatgatgtttgtgctgaatctgtacgagttcgcgaagaagaacttggggcctctgagatcgactgtgtggactgtggaggttgctatgatcactattgttggtccagtctaccagagattcaagggagtgcctgatgatttctttgctttactcgacacgaagattgatgaagcagctgacaagtttgataagcatgctcctcctttggctaagcaggtggtgtacctaacgctaggttctatccagaaagcattgaaaaagacccgagaatttgtgaacgaggctcaggctggcggtctacacacagctattcattctgcagctacagaatataagctgcttgtcttcaaccgatccatgaagttttgggttggactcgggtaccagtgtcctcccatacacacagtggtagccttctctacaccagctgctgcttacttgtcccggaaatacaacaaggtggtaagagacttgaacctgaagggttacactatctttggatatttacctttggttccgatcgatcagatatcaacagcacttaatagggcgaggcagagaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

258

Amino Acids

29.38

Weight (kDa)

9.94

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	54 - 252	4e-61	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23780
rosa_chinensis	RchiOBHm_Chr4g0430271
rosa_laevigata	RLG00000006989
rosa_multiflora	Rmu_sc0001089.1_g000025 Rmu_sc0027338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00372070
rosa_rugosa	Rorug04G0242200 Rorug04G0242300 Rorug04G0242400
rosa_samantha	Rh4AG298700 Rh4BG305300 Rh4CG320800 Rh4DG302600
rosa_wichuraiana	Rw4G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	415
Acc36I	ACCTGC	1 cut(s)	415
Acc65I	GGTACC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	591
AccI	GTMKAC	2 cut(s)	318, 508
AccII	CGCG	1 cut(s)	242
AciI	CCGC	1 cut(s)	504
AclWI	GGATC	3 cut(s)	51, 101, 558
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	1 cut(s)	710
AdeI	CACNNNGTG	1 cut(s)	616
AfaI	GTAC	3 cut(s)	233, 434, 593
AgsI	TTSAA	5 cut(s)	172, 331, 466, 559, 685
AhlI	ACTAGT	1 cut(s)	80
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	5 cut(s)	386, 518, 533, 547, 638
AluI	AGCT	5 cut(s)	386, 518, 533, 547, 638
Alw26I	GTCTC	2 cut(s)	60, 672
AlwI	GGATC	3 cut(s)	51, 101, 558
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	2 cut(s)	474, 587
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	5 cut(s)	383, 530, 547, 638, 641
ApoI	RAATTY	1 cut(s)	479
Asp718I	GGTACC	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	257, 311
AsuC2I	CCSGG	1 cut(s)	655
AvaI	CYCGRG	2 cut(s)	474, 587
AvaII	GGWCC	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	179
BaeI	ACNNNNGTAYC	4 cut(s)	575, 583, 608, 616
BanI	GGYRCC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	547
BbvI	GCAGC	5 cut(s)	395, 534, 542, 625, 628
BccI	CCATC	1 cut(s)	187
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	655
BcoDI	GTCTC	2 cut(s)	60, 672
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	2 cut(s)	81, 443
BfmI	CTRYAG	2 cut(s)	528, 534
BfoI	RGCGCY	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	5 cut(s)	384, 531, 548, 639, 642
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	5 cut(s)	385, 532, 549, 640, 643
Bme1390I	CCNGG	1 cut(s)	655
Bme18I	GGWCC	1 cut(s)	311
BmeT110I	CYCGRG	2 cut(s)	474, 587
BmgT120I	GGNCC	2 cut(s)	257, 311
BmiI	GGNNCC	3 cut(s)	258, 593, 726
BmrFI	CCNGG	1 cut(s)	655
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	547
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	655
Bsa29I	ATCGAT	1 cut(s)	732
Bse1I	ACTGG	2 cut(s)	314, 595
Bse21I	CCTNAGG	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	732
BseGI	GGATG	2 cut(s)	7, 198
BseMII	CTCAG	3 cut(s)	170, 254, 509
BseNI	ACTGG	2 cut(s)	314, 595
BseRI	GAGGAG	2 cut(s)	78, 399
BseXI	GCAGC	5 cut(s)	395, 534, 542, 625, 628
BseYI	CCCAGC	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	732
BshFI	GGCC	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	591
BshVI	ATCGAT	1 cut(s)	732
BsiEI	CGRYCG	1 cut(s)	732
BsiHKCI	CYCGRG	2 cut(s)	474, 587
BsiSI	CCGG	1 cut(s)	655
BslFI	GGGAC	1 cut(s)	637
BsmAI	GTCTC	2 cut(s)	60, 672
BsmFI	GGGAC	1 cut(s)	637
BsnI	GGCC	1 cut(s)	259
BsoBI	CYCGRG	2 cut(s)	474, 587
Bsp143I	GATC	8 cut(s)	43, 93, 115, 266, 297, 563, 729, 733
Bsp1720I	GCTNAGC	1 cut(s)	420
Bsp68I	TCGCGA	1 cut(s)	242
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	3 cut(s)	171, 255, 508
BspDI	ATCGAT	1 cut(s)	732
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	3 cut(s)	258, 593, 726
BspMAI	CTGCAG	1 cut(s)	532
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	3 cut(s)	51, 101, 558
BspT107I	GGYRCC	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	314, 595
BssMI	GATC	8 cut(s)	43, 93, 115, 266, 297, 563, 729, 733
Bst4CI	ACNGT	3 cut(s)	274, 283, 616
BstC8I	GCNNGC	3 cut(s)	151, 405, 502
BstDEI	CTNAG	4 cut(s)	179, 263, 420, 495
BstF5I	GGATG	2 cut(s)	7, 198
BstFNI	CGCG	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	8 cut(s)	46, 96, 118, 269, 300, 566, 732, 736
BstMAI	GTCTC	2 cut(s)	60, 672
BstMBI	GATC	8 cut(s)	43, 93, 115, 266, 297, 563, 729, 733
BstMCI	CGRYCG	1 cut(s)	732
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	653
BstSFI	CTRYAG	2 cut(s)	528, 534
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	5 cut(s)	395, 534, 542, 625, 628
BstV2I	GAAGAC	1 cut(s)	547
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
Bsu15I	ATCGAT	1 cut(s)	732
Bsu36I	CCTNAGG	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	259
BsuTUI	ATCGAT	1 cut(s)	732
BtsCI	GGATG	2 cut(s)	7, 198
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	5 cut(s)	103, 141, 204, 602, 621
BtuMI	TCGCGA	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	3 cut(s)	151, 405, 502
CaiI	CAGNNNCTG	1 cut(s)	641
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	257, 311
ClaI	ATCGAT	1 cut(s)	732
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	232, 433, 592
CviAII	CATG	3 cut(s)	208, 404, 568
CviQI	GTAC	3 cut(s)	232, 433, 592
DdeI	CTNAG	4 cut(s)	179, 263, 420, 495
DpnI	GATC	8 cut(s)	45, 95, 117, 268, 299, 565, 731, 735
DpnII	GATC	8 cut(s)	43, 93, 115, 266, 297, 563, 729, 733
DraIII	CACNNNGTG	1 cut(s)	616
Eco32I	GATATC	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	710
Eco81I	CCTNAGG	1 cut(s)	179
Eco88I	CYCGRG	2 cut(s)	474, 587
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRV	GATATC	1 cut(s)	741
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	211, 407, 571
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	3 cut(s)	207, 403, 567
FbaI	TGATCA	1 cut(s)	297
FblI	GTMKAC	2 cut(s)	318, 508
Fnu4HI	GCNGC	5 cut(s)	384, 531, 548, 639, 642
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	5 cut(s)	384, 531, 548, 639, 642
FspBI	CTAG	2 cut(s)	81, 443
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	5 cut(s)	384, 531, 548, 639, 642
GsaI	CCCAGC	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	1 cut(s)	655
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	211, 407, 571
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	68, 73, 226, 327, 585
HpaII	CCGG	1 cut(s)	655
Hpy166II	GTNNAC	5 cut(s)	279, 319, 433, 487, 509
Hpy188I	TCNGA	6 cut(s)	18, 62, 78, 264, 729, 738
Hpy188III	TCNNGA	2 cut(s)	241, 454
Hpy8I	GTNNAC	5 cut(s)	279, 319, 433, 487, 509
HpyAV	CCTTC	3 cut(s)	157, 634, 685
HpyCH4III	ACNGT	3 cut(s)	274, 283, 616
HpyCH4V	TGCA	3 cut(s)	4, 25, 530
HpyF3I	CTNAG	4 cut(s)	179, 263, 420, 495
Hsp92II	CATG	3 cut(s)	211, 407, 571
HspAI	GCGC	1 cut(s)	175
KpnI	GGTACC	1 cut(s)	595
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	8 cut(s)	43, 93, 115, 266, 297, 563, 729, 733
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	5 cut(s)	395, 534, 542, 625, 628
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	81, 443
MaeIII	GTNAC	1 cut(s)	695
MalI	GATC	8 cut(s)	45, 95, 117, 268, 299, 565, 731, 735
MboI	GATC	8 cut(s)	43, 93, 115, 266, 297, 563, 729, 733
MboII	GAAGA	5 cut(s)	38, 256, 259, 382, 547
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	1 cut(s)	479
MlyI	GAGTC	2 cut(s)	62, 579
MmeI	TCCRAC	1 cut(s)	562
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	753
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	2 cut(s)	386, 638
MspI	CCGG	1 cut(s)	655
MspR9I	CCNGG	1 cut(s)	655
MvnI	CGCG	1 cut(s)	242
NciI	CCSGG	1 cut(s)	655
NdeII	GATC	8 cut(s)	43, 93, 115, 266, 297, 563, 729, 733
NlaIII	CATG	3 cut(s)	211, 407, 571
NlaIV	GGNNCC	3 cut(s)	258, 593, 726
NruI	TCGCGA	1 cut(s)	242
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	407
PaeI	GCATGC	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	73, 226, 327
PfoI	TCCNGGA	1 cut(s)	653
PkrI	GCNGC	5 cut(s)	385, 532, 549, 640, 643
Ple19I	CGATCG	1 cut(s)	732
PleI	GAGTC	2 cut(s)	62, 579
PpsI	GAGTC	2 cut(s)	62, 579
PspFI	CCCAGC	1 cut(s)	120
PspN4I	GGNNCC	3 cut(s)	258, 593, 726
PspPI	GGNCC	2 cut(s)	257, 311
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	43
PvuI	CGATCG	1 cut(s)	732
PvuII	CAGCTG	2 cut(s)	386, 638
RruI	TCGCGA	1 cut(s)	242
RsaI	GTAC	3 cut(s)	233, 434, 593
RsaNI	GTAC	3 cut(s)	232, 433, 592
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	753
SatI	GCNGC	5 cut(s)	384, 531, 548, 639, 642
Sau3AI	GATC	8 cut(s)	43, 93, 115, 266, 297, 563, 729, 733
Sau96I	GGNCC	2 cut(s)	257, 311
SchI	GAGTC	2 cut(s)	62, 579
ScrFI	CCNGG	1 cut(s)	655
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	2 cut(s)	528, 534
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	212
SpeI	ACTAGT	1 cut(s)	80
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	1 cut(s)	479
SsiI	CCGC	1 cut(s)	504
SspMI	CTAG	2 cut(s)	81, 443
StyD4I	CCNGG	1 cut(s)	653
TaaI	ACNGT	3 cut(s)	274, 283, 616
TaqI	TCGA	4 cut(s)	71, 269, 363, 732
TasI	AATT	1 cut(s)	479
TfiI	GAWTC	3 cut(s)	73, 226, 327
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	5 cut(s)	103, 148, 204, 602, 621
TseI	GCWGC	5 cut(s)	383, 530, 547, 638, 641
TspDTI	ATGAA	6 cut(s)	38, 123, 152, 393, 512, 584
TspRI	CASTG	5 cut(s)	103, 148, 204, 602, 621
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	479
XceI	RCATGY	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XmiI	GTMKAC	2 cut(s)	318, 508
XspI	CTAG	2 cut(s)	81, 443
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.