Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001093.1

Orthogroup ID

OG0013415

Physical Location & Seq

Genomic Coordinates Reverse (-)

1716 .. 7548

Gene Structure 5833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001093.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4044 bp

atgtcacaagattctcaggggataaagacgattgagcagtggagatggtcagatatgcaaggccttgagcttgtgactgaccctcctccttcttcttctgacccatctaaaaccaacccaacaacaacaacaacaactgctaaagagccaagagaagctcaagcaatggagagctctgctgagccaacaacaaagaaggagtctaatgacagcggtggaggtgagaagcctgaggctgttccaagcatcggcttcggagaggttttcagattcgctgatggattggattacgtattgatgggaattgggtctgttggcgcaatcgtgcatggttgttctctgcccatctttcttcgcttctttgctgatcttgtcaactctttcggggcaaatgcgaatgacatggacaagatgatgcaagaggttttgaagtatgcattgtactttcttgttgtgggagctgcaatatgggcttcttcatgggcagagatatcgtgttggatgtggaccggagaaaggcaatcgaccaagatgaggatcaagtaccttgaagctgctttgagccaggacattcagtttttcgatacagaggttcgaacctccgatgtcgtttttgccatcaacactgatgcagtgatggtccaagacgctattagcgagaagttgggtaatttcattcactacatggcgacatttgtatctggattcgtggtgggtttcactgctgtgtggcaattagctcttgtgactctagcagtggtgcccctgatagctgtgattggagccattcacaccaccacattagccaaactctcagggaaaagccaagaggctctttcacaagcaggacacactgtagaacagactgtagttcaaattcgagttgtcatgtcgtacgttggggaatcaagagcactagaagcatactcctcagcattgagaattgcccagaagcttggttacaagactggatttgctaaaggaatgggacttggagcaacttactttgtagtcttctgctgttatgcacttcttttatggtatgggggttatcttgttaggcaccacttcaccaatggaggtcttgccatagccaccatgttttcggtcatgataggtggactggctttggggcaatctgctccaagcatgggcgcatttgcaaaggctaaagttgcagctgccaagatatttcggatcattgaccacaagccaggcatggaccgaaacagtgaatcaggggttgaattggaatccgttacaggactagtggagctgaaaaatgtggatttctcctacccatcaaggcaggatgttcgtattctcaacaatttctctttgaatgttccggctggaaaaaccatagctttggtcggtagcagtggctctggtaaaagcactgtggtctccctcattgagagattttatgacccctcctcaggacaagttctactagatggacatgacataaagacattgaaattaaagtggctaaggcagcagatagggcttgtgagccaagagcctgctctgtttgctaccaccattaaagagaatatacttttggggaggcctgatgcagaccaagttgagattgaagaagctgccagggttgccaatgctcattcattcattgtcaaacttcctgatggttttgatactcaggtaggggaaagaggagtgcaactatctggaggacagaagcagaggatagccatagcaagggcaatgcttaaaaacccagcaatccttctcttagatgaggcaacaagtgcattggactctgagtcggaaaagctggtgcaagaagccctggaccgttttatgataggcagaacaactcttgtcattgctcaccgcctctcaaccattcgcaaagctgaccttgtagctgtactccagcagggaagtgtttctgaaattggaacccatgatgaactcttttctaaaggagaaaatggtgtttatgccaagctcattcgaatgcaagaggcagctcatgagaccgctctcaacaatgccagaaagagtagtgctaggccttctagtgcaagaaactctgttagctcaccaataatcgcccgaaattcttcatacggtcgatcaccatattcacgcaggctctctgacttttccacttctgattttagtctctcccttgatgccacacaccccaattaccgtctagaaaagcttgccttcaaggagcaagccagttccttctggcgccttgccaagatgaactctcctgaatgggtgtatgcattagttggttcaattggctctgttgtttgtggttctcttagtgctttctttgcatatgttctaagtgcagtcctcagtgtctactacaatccggaccatgatttcatgatcaagcaaattaataagtactgctatttgttaattggactttcatcagctgcactactcttcaacacgctacaacattctttctgggatattgtgggagaaaatcttacaaaacgggtgagggagaaaatgctgacagcagtgttgaaaaatgaaatggcatggtttgatcaggaggaaaatgagagtgccaggattgcagcaaggctggcccttgatgccaacaatgtcagatcagcaattggagacaggatttctgttattgtacagaacacagcactcatgctagtcgcttgcactgcaggatttgttttgcaatggcgccttgcccttgtcctcgtagctgtcttccctgttgttgttgccgccacagttttgcagaaaatgttcatgaccggtttctcgggagaccttgaagctgcacatgccaaggccacccaactagctggggaggccatagccaatgtaaggactgttgctgcattcaactccgagggaaaaattgttggtctcttttcctccaacctgcagattcccctgcgtcggtgtttttggaagggtcagattgcaggaagtggatttgggatagctcagtttgcactttatgcgtcctatgctctaggtctttggtatgcttcctggcttgtaaagcatggaatctctgatttctcaaaggcgatccgagttttcatggtcctcatggtatctgctaacggtgcagcagagacactaaccctggctcctgactttattaagggtggtcgagccatgcaatcagtttttgagctccttgaccgcaaaactgaaattgaacctgatgatattgatgctactgcagtgcctgaccgtctgcgtggagaagttgagtttaagcatgtagacttttcgtatccttctcgacctgatgttcctgtgtttcgtgatctctccctccgtgcccgagcaggcaagactcttgctcttgttggtcctagtgggtgtggaaagagctcagtcatttcattagtacagcggttttacgacccaacatcaggaagagttattattgatggaaaggatattcgcaaatacaatctcaagtctctcagaaggcacattgctgtggttccccaggagccatgcctctttgctacaactatatatgaaaatatcgcttatggacacgagtcagcaactgaggctgagatcattgaagctgctaatctagccaatgctcacaagtttgtatctgcattgccagatggctacaaaacgtttgttggggagaggggaattcaactatctggaggacagaaacaaaggattgctattgccagggctttactgaggaaggcagagcttatgcttctcgatgaagccacaagcgcacttgatgccgagtccgagagatctattcaagaagctctggagcgcgcttgttcaggaaaaaccacaattgtggttgcacacaggctatcaactattagaaatgccagtgttattgcggtaattgatgatgggaaagtggcagagcaaggatcacacaaccatctattgaaaaactacccggacgggtgttatgcgcgcatgatacagctacaaagattttcacacagccaggccattggaatagcatcaggttcaagttcttcagtaagaccaagggaagaggaagaaagagaaggcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0008150 GO:0008361 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009639 GO:0009640 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009966 GO:0009987 GO:0010033 GO:0010315 GO:0010328 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0015399 GO:0015405 GO:0015562 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0023051 GO:0030054 GO:0032501 GO:0032502 GO:0032535 GO:0042221 GO:0042623 GO:0042626 GO:0043207 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0043492 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0060918 GO:0060919 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080161 GO:0090066 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1347

Amino Acids

146.88

Weight (kDa)

7.6

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36910
fragaria_vesca	FvH4_6g16450 FvH4_6g16450 FvH4_6g16450
malus_domestica	MD04G1092800.v1.1
prunus_persica	Prupe.7G129600_v2.0.a1
pyrus_communis	pycom04g08730 pycom04g08740 pycom12g11150
rosa_chinensis	RchiOBHm_Chr3g0470311
rosa_laevigata	RLG00000024279
rosa_multiflora	Rmu_sc0001093.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410950
rosa_rugosa	Rorug03G0108000
rosa_samantha	Rh3AG157800 Rh3BG182100 Rh3DG192800
rosa_wichuraiana	Rw3G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2907
AccB1I	GGYRCC	4 cut(s)	760, 1062, 2226, 2694
AccBSI	CCGCTC	1 cut(s)	2009
AccI	GTMKAC	2 cut(s)	2346, 3252
AccII	CGCG	2 cut(s)	3786, 3937
AccIII	TCCGGA	1 cut(s)	2356
AciI	CCGC	7 cut(s)	213, 1858, 2007, 2739, 3169, 3385, 3857
AclI	AACGTT	1 cut(s)	3626
AclWI	GGATC	4 cut(s)	545, 1205, 3046, 3898
AcsI	RAATTY	3 cut(s)	876, 2086, 3645
AcuI	CTGAAG	1 cut(s)	3987
AcyI	GRCGYC	2 cut(s)	2227, 2695
AfaI	GTAC	7 cut(s)	443, 545, 896, 1896, 2393, 2640, 3381
AfiI	CCNNNNNNNGG	9 cut(s)	248, 516, 534, 1151, 1439, 1722, 2841, 2916, 3404
AgeI	ACCGGT	1 cut(s)	2768
AhdI	GACNNNNNGTC	1 cut(s)	1786
AhlI	ACTAGT	1 cut(s)	1267
AjuI	GAANNNNNNNTTGG	2 cut(s)	1547, 1579
AleI	CACNNNNGTG	2 cut(s)	725, 3809
Alw21I	GWGCWC	4 cut(s)	176, 916, 3162, 3365
Alw26I	GTCTC	8 cut(s)	1411, 1997, 2156, 2613, 2775, 2888, 3092, 3459
AlwI	GGATC	4 cut(s)	545, 1205, 3046, 3898
AlwNI	CAGNNNCTG	2 cut(s)	3215, 3548
Ama87I	CYCGRG	2 cut(s)	2776, 3312
Aor13HI	TCCGGA	1 cut(s)	2356
AoxI	GGCC	7 cut(s)	61, 1571, 2039, 2583, 2805, 2826, 3972
ApoI	RAATTY	3 cut(s)	876, 2086, 3645
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AseI	ATTAAT	1 cut(s)	2385
AsiGI	ACCGGT	1 cut(s)	2768
Asp700I	GAANNNNTTC	3 cut(s)	1912, 2089, 2759
AspLEI	GCGC	9 cut(s)	320, 1157, 2229, 2697, 3740, 3786, 3788, 3937, 3939
AspS9I	GGNCC	8 cut(s)	507, 640, 1222, 1816, 2359, 2584, 3067, 3341
AsuC2I	CCSGG	1 cut(s)	3920
AsuHPI	GGTGA	6 cut(s)	233, 1063, 1847, 2061, 2097, 2503
AsuII	TTCGAA	2 cut(s)	595, 1981
AvaI	CYCGRG	2 cut(s)	2776, 3312
AvaII	GGWCC	7 cut(s)	507, 640, 1222, 1816, 2359, 3067, 3341
AxyI	CCTNAGG	2 cut(s)	231, 1438
BaeGI	GKGCMC	2 cut(s)	765, 3313
BaeI	ACNNNNGTAYC	6 cut(s)	576, 609, 681, 714, 1650, 1683
BanI	GGYRCC	4 cut(s)	760, 1062, 2226, 2694
BanII	GRGCYC	3 cut(s)	176, 3162, 3365
BarI	GAAGNNNNNNTAC	2 cut(s)	944, 976
BauI	CACGAG	1 cut(s)	3536
BbsI	GAAGAC	2 cut(s)	1006, 2713
Bbv12I	GWGCWC	4 cut(s)	176, 916, 3162, 3365
BbvCI	CCTCAGC	1 cut(s)	931
BcgI	CGANNNNNNTGC	6 cut(s)	235, 269, 474, 508, 1298, 1332
BciVI	GTATCC	1 cut(s)	3273
BclI	TGATCA	2 cut(s)	2373, 2542
BcnI	CCSGG	1 cut(s)	3920
BcoDI	GTCTC	8 cut(s)	1411, 1997, 2156, 2613, 2775, 2888, 3092, 3459
BcuI	ACTAGT	1 cut(s)	1267
BfmI	CTRYAG	5 cut(s)	855, 867, 2673, 2900, 3207
BfoI	RGCGCY	2 cut(s)	2230, 2698
BfuAI	ACCTGC	1 cut(s)	2907
BfuI	GTATCC	1 cut(s)	3273
BglII	AGATCT	1 cut(s)	3761
BlpI	GCTNAGC	1 cut(s)	180
BmcAI	AGTACT	1 cut(s)	2393
Bme18I	GGWCC	7 cut(s)	507, 640, 1222, 1816, 2359, 3067, 3341
BmeRI	GACNNNNNGTC	1 cut(s)	1786
BmeT110I	CYCGRG	2 cut(s)	2776, 3312
BmgT120I	GGNCC	8 cut(s)	507, 640, 1222, 1816, 2359, 2584, 3067, 3341
BmiI	GGNNCC	9 cut(s)	762, 784, 1064, 1927, 2228, 2696, 3114, 3480, 3489
BmsI	GCATC	9 cut(s)	255, 405, 619, 1567, 2152, 2581, 3190, 3736, 3995
BoxI	GACNNNNGTC	1 cut(s)	3538
BpiI	GAAGAC	2 cut(s)	1006, 2713
BpmI	CTGGAG	4 cut(s)	1713, 1883, 3678, 3800
Bpu10I	CCTNAGC	2 cut(s)	931, 1493
Bpu1102I	GCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	2 cut(s)	595, 1981
BpuEI	CTTGAG	3 cut(s)	86, 144, 3434
BpuMI	CCSGG	1 cut(s)	3920
BsaAI	YACGTR	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	536
BsaHI	GRCGYC	2 cut(s)	2227, 2695
BsaI	GGTCTC	4 cut(s)	1411, 1997, 2775, 2888
BsaJI	CCNNGG	8 cut(s)	1608, 1812, 2802, 2865, 3108, 3483, 3687, 4013
BsaWI	WCCGGW	3 cut(s)	509, 2356, 2768
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 3097, 3127
Bsc4I	CCNNNNNNNGG	9 cut(s)	248, 516, 534, 1151, 1439, 1722, 2841, 2916, 3404
Bse118I	RCCGGY	1 cut(s)	2768
Bse1I	ACTGG	4 cut(s)	973, 1128, 2214, 3846
Bse21I	CCTNAGG	2 cut(s)	231, 1438
Bse3DI	GCAATG	6 cut(s)	171, 1734, 1848, 2696, 3468, 3605
Bse8I	GATNNNNATC	1 cut(s)	536
BseAI	TCCGGA	1 cut(s)	2356
BseDI	CCNNGG	8 cut(s)	1608, 1812, 2802, 2865, 3108, 3483, 3687, 4013
BseGI	GGATG	2 cut(s)	507, 1318
BseJI	GATNNNNATC	1 cut(s)	536
BseLI	CCNNNNNNNGG	9 cut(s)	248, 516, 534, 1151, 1439, 1722, 2841, 2916, 3404
BseMI	GCAATG	6 cut(s)	171, 1734, 1848, 2696, 3468, 3605
BseNI	ACTGG	4 cut(s)	973, 1128, 2214, 3846
BsePI	GCGCGC	2 cut(s)	3784, 3935
BseRI	GAGGAG	4 cut(s)	75, 919, 1426, 1692
BseSI	GKGCMC	2 cut(s)	765, 3313
BseYI	CCCAGC	2 cut(s)	1741, 2819
BsgI	GTGCAG	4 cut(s)	2352, 2409, 2778, 3111
Bsh1236I	CGCG	2 cut(s)	3786, 3937
Bsh1285I	CGRYCG	1 cut(s)	2101
BshFI	GGCC	7 cut(s)	63, 1573, 2041, 2585, 2807, 2828, 3974
BshNI	GGYRCC	4 cut(s)	760, 1062, 2226, 2694
BshTI	ACCGGT	1 cut(s)	2768
BsiEI	CGRYCG	1 cut(s)	2101
BsiHKAI	GWGCWC	4 cut(s)	176, 916, 3162, 3365
BsiHKCI	CYCGRG	2 cut(s)	2776, 3312
BsiSI	CCGG	5 cut(s)	510, 1349, 2357, 2769, 3920
BsiWI	CGTACG	1 cut(s)	894
BslFI	GGGAC	1 cut(s)	1002
BslI	CCNNNNNNNGG	9 cut(s)	248, 516, 534, 1151, 1439, 1722, 2841, 2916, 3404
BsmAI	GTCTC	8 cut(s)	1411, 1997, 2156, 2613, 2775, 2888, 3092, 3459
BsmFI	GGGAC	1 cut(s)	1002
BsmI	GAATGC	2 cut(s)	1989, 2855
BsnI	GGCC	7 cut(s)	63, 1573, 2041, 2585, 2807, 2828, 3974
Bso31I	GGTCTC	4 cut(s)	1411, 1997, 2775, 2888
BsoBI	CYCGRG	2 cut(s)	2776, 3312
Bsp119I	TTCGAA	2 cut(s)	595, 1981
Bsp1286I	GDGCHC	6 cut(s)	176, 765, 916, 3162, 3313, 3365
Bsp13I	TCCGGA	1 cut(s)	2356
Bsp1407I	TGTACA	1 cut(s)	2638
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	7 cut(s)	213, 1858, 2007, 2739, 3169, 3385, 3857
BspANI	GGCC	7 cut(s)	63, 1573, 2041, 2585, 2807, 2828, 3974
BspEI	TCCGGA	1 cut(s)	2356
BspFNI	CGCG	2 cut(s)	3786, 3937
BspHI	TCATGA	4 cut(s)	1110, 1999, 2370, 2763
BspLI	GGNNCC	9 cut(s)	762, 784, 1064, 1927, 2228, 2696, 3114, 3480, 3489
BspMAI	CTGCAG	3 cut(s)	2677, 2904, 3211
BspMI	ACCTGC	1 cut(s)	2907
BspPI	GGATC	4 cut(s)	545, 1205, 3046, 3898
BspT104I	TTCGAA	2 cut(s)	595, 1981
BspT107I	GGYRCC	4 cut(s)	760, 1062, 2226, 2694
BspTNI	GGTCTC	4 cut(s)	1411, 1997, 2775, 2888
BsrBI	CCGCTC	1 cut(s)	2009
BsrDI	GCAATG	6 cut(s)	171, 1734, 1848, 2696, 3468, 3605
BsrFI	RCCGGY	1 cut(s)	2768
BsrGI	TGTACA	1 cut(s)	2638
BsrI	ACTGG	4 cut(s)	973, 1128, 2214, 3846
BssAI	RCCGGY	1 cut(s)	2768
BssECI	CCNNGG	8 cut(s)	1608, 1812, 2802, 2865, 3108, 3483, 3687, 4013
BssHII	GCGCGC	2 cut(s)	3784, 3935
BssNI	GRCGYC	2 cut(s)	2227, 2695
BssSI	CACGAG	1 cut(s)	3536
BssT1I	CCWWGG	2 cut(s)	2802, 4013
Bst2BI	CACGAG	1 cut(s)	3536
Bst6I	CTCTTC	3 cut(s)	2438, 3403, 4014
BstACI	GRCGYC	2 cut(s)	2227, 2695
BstAPI	GCANNNNNTGC	3 cut(s)	1772, 2978, 3746
BstAUI	TGTACA	1 cut(s)	2638
BstBAI	YACGTR	1 cut(s)	292
BstBI	TTCGAA	2 cut(s)	595, 1981
BstC8I	GCNNGC	9 cut(s)	1527, 2120, 2196, 2211, 2583, 2668, 3319, 3786, 3937
BstF5I	GGATG	2 cut(s)	507, 1318
BstFNI	CGCG	2 cut(s)	3786, 3937
BstH2I	RGCGCY	2 cut(s)	2230, 2698
BstHHI	GCGC	9 cut(s)	320, 1157, 2229, 2697, 3740, 3786, 3788, 3937, 3939
BstMAI	GTCTC	8 cut(s)	1411, 1997, 2156, 2613, 2775, 2888, 3092, 3459
BstMCI	CGRYCG	1 cut(s)	2101
BstNSI	RCATGY	2 cut(s)	2801, 3251
BstPAI	GACNNNNGTC	1 cut(s)	3538
BstSFI	CTRYAG	5 cut(s)	855, 867, 2673, 2900, 3207
BstSLI	GKGCMC	2 cut(s)	765, 3313
BstSNI	TACGTA	1 cut(s)	292
BstUI	CGCG	2 cut(s)	3786, 3937
BstV2I	GAAGAC	2 cut(s)	1006, 2713
BstX2I	RGATCY	1 cut(s)	3761
BstXI	CCANNNNNNTGG	5 cut(s)	956, 1369, 2819, 3811, 3977
BstYI	RGATCY	1 cut(s)	3761
Bsu36I	CCTNAGG	2 cut(s)	231, 1438
BsuI	GTATCC	1 cut(s)	3273
BsuRI	GGCC	7 cut(s)	63, 1573, 2041, 2585, 2807, 2828, 3974
BtsCI	GGATG	2 cut(s)	507, 1318
BtsI	GCAGTG	8 cut(s)	44, 639, 720, 762, 1387, 2520, 2670, 3216
BveI	ACCTGC	1 cut(s)	2907
Cac8I	GCNNGC	9 cut(s)	1527, 2120, 2196, 2211, 2583, 2668, 3319, 3786, 3937
CaiI	CAGNNNCTG	2 cut(s)	3215, 3548
CciI	TCATGA	4 cut(s)	1110, 1999, 2370, 2763
CfoI	GCGC	9 cut(s)	320, 1157, 2229, 2697, 3740, 3786, 3788, 3937, 3939
Cfr10I	RCCGGY	1 cut(s)	2768
Cfr13I	GGNCC	8 cut(s)	507, 640, 1222, 1816, 2359, 2584, 3067, 3341
CseI	GACGC	3 cut(s)	656, 2903, 2970
Csp6I	GTAC	7 cut(s)	442, 544, 895, 1895, 2392, 2639, 3380
CspAI	ACCGGT	1 cut(s)	2768
CviQI	GTAC	7 cut(s)	442, 544, 895, 1895, 2392, 2639, 3380
DinI	GGCGCC	2 cut(s)	2228, 2696
DriI	GACNNNNNGTC	1 cut(s)	1786
Eam1104I	CTCTTC	3 cut(s)	2438, 3403, 4014
Eam1105I	GACNNNNNGTC	1 cut(s)	1786
EarI	CTCTTC	3 cut(s)	2438, 3403, 4014
Ecl136II	GAGCTC	3 cut(s)	174, 3160, 3363
Eco105I	TACGTA	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	2802, 4013
Eco147I	AGGCCT	3 cut(s)	63, 1573, 2041
Eco24I	GRGCYC	3 cut(s)	176, 3162, 3365
Eco31I	GGTCTC	4 cut(s)	1411, 1997, 2775, 2888
Eco32I	GATATC	1 cut(s)	492
Eco47I	GGWCC	7 cut(s)	507, 640, 1222, 1816, 2359, 3067, 3341
Eco53kI	GAGCTC	3 cut(s)	174, 3160, 3363
Eco57I	CTGAAG	1 cut(s)	3987
Eco81I	CCTNAGG	2 cut(s)	231, 1438
Eco88I	CYCGRG	2 cut(s)	2776, 3312
EcoICRI	GAGCTC	3 cut(s)	174, 3160, 3363
EcoRI	GAATTC	1 cut(s)	3645
EcoRV	GATATC	1 cut(s)	492
EcoT14I	CCWWGG	2 cut(s)	2802, 4013
EcoT22I	ATGCAT	2 cut(s)	439, 2266
EcoT38I	GRGCYC	3 cut(s)	176, 3162, 3365
EgeI	GGCGCC	2 cut(s)	2228, 2696
EheI	GGCGCC	2 cut(s)	2228, 2696
ErhI	CCWWGG	2 cut(s)	2802, 4013
FalI	AAGNNNNNCTT	6 cut(s)	819, 851, 1869, 1901, 2183, 2215
FaqI	GGGAC	1 cut(s)	1002
FauNDI	CATATG	1 cut(s)	2320
FbaI	TGATCA	2 cut(s)	2373, 2542
FblI	GTMKAC	2 cut(s)	2346, 3252
FokI	GGATG	2 cut(s)	514, 1325
FriOI	GRGCYC	3 cut(s)	176, 3162, 3365
GlaI	GCGC	9 cut(s)	319, 1156, 2228, 2696, 3739, 3785, 3787, 3936, 3938
GsaI	CCCAGC	2 cut(s)	1745, 2823
GsuI	CTGGAG	4 cut(s)	1713, 1883, 3678, 3800
HaeII	RGCGCY	2 cut(s)	2230, 2698
HaeIII	GGCC	7 cut(s)	63, 1573, 2041, 2585, 2807, 2828, 3974
HapII	CCGG	5 cut(s)	510, 1349, 2357, 2769, 3920
HgaI	GACGC	3 cut(s)	656, 2903, 2970
HhaI	GCGC	9 cut(s)	320, 1157, 2229, 2697, 3740, 3786, 3788, 3937, 3939
Hin1I	GRCGYC	2 cut(s)	2227, 2695
Hin6I	GCGC	9 cut(s)	318, 1155, 2227, 2695, 3738, 3784, 3786, 3935, 3937
HinP1I	GCGC	9 cut(s)	318, 1155, 2227, 2695, 3738, 3784, 3786, 3935, 3937
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	2 cut(s)	953, 2192
HpaII	CCGG	5 cut(s)	510, 1349, 2357, 2769, 3920
HphI	GGTGA	6 cut(s)	233, 1063, 1847, 2061, 2097, 2503
Hpy166II	GTNNAC	5 cut(s)	376, 507, 1121, 2347, 3253
Hpy8I	GTNNAC	5 cut(s)	376, 507, 1121, 2347, 3253
Hpy99I	CGWCG	1 cut(s)	2919
HpyCH4IV	ACGT	3 cut(s)	291, 897, 3626
HpySE526I	ACGT	3 cut(s)	291, 897, 3626
Hsp92I	GRCGYC	2 cut(s)	2227, 2695
HspAI	GCGC	9 cut(s)	318, 1155, 2227, 2695, 3738, 3784, 3786, 3935, 3937
KasI	GGCGCC	2 cut(s)	2226, 2694
Kpn2I	TCCGGA	1 cut(s)	2356
Ksp22I	TGATCA	2 cut(s)	2373, 2542
LweI	GCATC	9 cut(s)	255, 405, 619, 1567, 2152, 2581, 3190, 3736, 3995
MaeII	ACGT	3 cut(s)	291, 897, 3626
MaeIII	GTNAC	5 cut(s)	3, 73, 745, 959, 1258
MbiI	CCGCTC	1 cut(s)	2009
MfeI	CAATTG	3 cut(s)	2277, 2613, 3807
MflI	RGATCY	1 cut(s)	3761
MhlI	GDGCHC	6 cut(s)	176, 765, 916, 3162, 3313, 3365
Mly113I	GGCGCC	2 cut(s)	2227, 2695
MlyI	GAGTC	7 cut(s)	209, 742, 1775, 1796, 3319, 3548, 3761
MmeI	TCCRAC	3 cut(s)	479, 1770, 2919
Mph1103I	ATGCAT	2 cut(s)	439, 2266
MroI	TCCGGA	1 cut(s)	2356
MroXI	GAANNNNTTC	3 cut(s)	1912, 2089, 2759
MseI	TTAA	7 cut(s)	1484, 1548, 1734, 2385, 2405, 3126, 3243
MslI	CAYNNNNRTG	4 cut(s)	725, 1982, 3473, 3809
MspA1I	CMGCKG	4 cut(s)	213, 1181, 2423, 3385
MspI	CCGG	5 cut(s)	510, 1349, 2357, 2769, 3920
MunI	CAATTG	3 cut(s)	2277, 2613, 3807
Mva1269I	GAATGC	2 cut(s)	1989, 2855
MvnI	CGCG	2 cut(s)	3786, 3937
NarI	GGCGCC	2 cut(s)	2227, 2695
NciI	CCSGG	1 cut(s)	3920
NdeI	CATATG	1 cut(s)	2320
NlaIV	GGNNCC	9 cut(s)	762, 784, 1064, 1927, 2228, 2696, 3114, 3480, 3489
NmeAIII	GCCGAG	1 cut(s)	3775
NmuCI	GTSAC	3 cut(s)	3, 73, 745
NsiI	ATGCAT	2 cut(s)	439, 2266
NspI	RCATGY	2 cut(s)	2801, 3251
NspV	TTCGAA	2 cut(s)	595, 1981
OliI	CACNNNNGTG	2 cut(s)	725, 3809
PagI	TCATGA	4 cut(s)	1110, 1999, 2370, 2763
PauI	GCGCGC	2 cut(s)	3784, 3935
PceI	AGGCCT	3 cut(s)	63, 1573, 2041
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PctI	GAATGC	2 cut(s)	1989, 2855
PdmI	GAANNNNTTC	3 cut(s)	1912, 2089, 2759
PfeI	GAWTC	8 cut(s)	11, 270, 705, 905, 1235, 1253, 2905, 3030
Pfl23II	CGTACG	1 cut(s)	894
PinAI	ACCGGT	1 cut(s)	2768
PleI	GAGTC	7 cut(s)	208, 742, 1775, 1795, 3319, 3547, 3760
PluTI	GGCGCC	2 cut(s)	2230, 2698
PpsI	GAGTC	7 cut(s)	208, 742, 1775, 1795, 3319, 3547, 3760
Ppu21I	YACGTR	1 cut(s)	292
PshAI	GACNNNNGTC	1 cut(s)	3538
PshBI	ATTAAT	1 cut(s)	2385
Psp124BI	GAGCTC	3 cut(s)	176, 3162, 3365
Psp1406I	AACGTT	1 cut(s)	3626
PspFI	CCCAGC	2 cut(s)	1741, 2819
PspLI	CGTACG	1 cut(s)	894
PspN4I	GGNNCC	9 cut(s)	762, 784, 1064, 1927, 2228, 2696, 3114, 3480, 3489
PspPI	GGNCC	8 cut(s)	507, 640, 1222, 1816, 2359, 2584, 3067, 3341
PstI	CTGCAG	3 cut(s)	2677, 2904, 3211
PstNI	CAGNNNCTG	2 cut(s)	3215, 3548
PsuI	RGATCY	1 cut(s)	3761
PteI	GCGCGC	2 cut(s)	3784, 3935
PvuII	CAGCTG	2 cut(s)	1181, 2423
RsaI	GTAC	7 cut(s)	443, 545, 896, 1896, 2393, 2640, 3381
RsaNI	GTAC	7 cut(s)	442, 544, 895, 1895, 2392, 2639, 3380
RseI	CAYNNNNRTG	4 cut(s)	725, 1982, 3473, 3809
SacI	GAGCTC	3 cut(s)	176, 3162, 3365
SaqAI	TTAA	7 cut(s)	1484, 1548, 1734, 2385, 2405, 3126, 3243
Sau96I	GGNCC	8 cut(s)	507, 640, 1222, 1816, 2359, 2584, 3067, 3341
ScaI	AGTACT	1 cut(s)	2393
SchI	GAGTC	7 cut(s)	209, 742, 1775, 1796, 3319, 3548, 3761
SduI	GDGCHC	6 cut(s)	176, 765, 916, 3162, 3313, 3365
SfaNI	GCATC	9 cut(s)	255, 405, 619, 1567, 2152, 2581, 3190, 3736, 3995
SfcI	CTRYAG	5 cut(s)	855, 867, 2673, 2900, 3207
SfoI	GGCGCC	2 cut(s)	2228, 2696
SfuI	TTCGAA	2 cut(s)	595, 1981
SinI	GGWCC	7 cut(s)	507, 640, 1222, 1816, 2359, 3067, 3341
SmiMI	CAYNNNNRTG	4 cut(s)	725, 1982, 3473, 3809
SmlI	CTYRAG	3 cut(s)	65, 159, 3449
SmoI	CTYRAG	3 cut(s)	65, 159, 3449
SnaBI	TACGTA	1 cut(s)	292
SpeI	ACTAGT	1 cut(s)	1267
SseBI	AGGCCT	3 cut(s)	63, 1573, 2041
SsiI	CCGC	7 cut(s)	213, 1858, 2007, 2739, 3169, 3385, 3857
SspDI	GGCGCC	2 cut(s)	2226, 2694
SstI	GAGCTC	3 cut(s)	176, 3162, 3365
StuI	AGGCCT	3 cut(s)	63, 1573, 2041
StyI	CCWWGG	2 cut(s)	2802, 4013
TaiI	ACGT	3 cut(s)	294, 900, 3629
TaqI	TCGA	9 cut(s)	524, 582, 595, 880, 1981, 2101, 3136, 3271, 3723
TaqII	GACCGA	2 cut(s)	1096, 1239
TatI	WGTACW	5 cut(s)	441, 1894, 2391, 2638, 3379
TauI	GCSGC	1 cut(s)	2741
TfiI	GAWTC	8 cut(s)	11, 270, 705, 905, 1235, 1253, 2905, 3030
Tru1I	TTAA	7 cut(s)	1484, 1548, 1734, 2385, 2405, 3126, 3243
Tru9I	TTAA	7 cut(s)	1484, 1548, 1734, 2385, 2405, 3126, 3243
TseFI	GTSAC	3 cut(s)	3, 73, 745
Tsp45I	GTSAC	3 cut(s)	3, 73, 745
TspGWI	ACGGA	2 cut(s)	1246, 3296
VpaK11BI	GGWCC	7 cut(s)	507, 640, 1222, 1816, 2359, 3067, 3341
VspI	ATTAAT	1 cut(s)	2385
XapI	RAATTY	3 cut(s)	876, 2086, 3645
XbaI	TCTAGA	1 cut(s)	2185
XceI	RCATGY	2 cut(s)	2801, 3251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1073
XmiI	GTMKAC	2 cut(s)	2346, 3252
XmnI	GAANNNNTTC	3 cut(s)	1912, 2089, 2759
ZrmI	AGTACT	1 cut(s)	2393
Zsp2I	ATGCAT	2 cut(s)	439, 2266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.