Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0013415

Physical Location & Seq

Genomic Coordinates Forward (+)

17252086 .. 17258974

Gene Structure 6889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG192800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGTGGACCGGAGAAAGGCAATCGACCAAGATGAGGATCAAGTACCTTGAAGCTGCTTTGAGCCAGGACATTCAGTTTTTCGATACAGAGGTTCGAACCTCCGATGTCGTTTTTGCCATCAACACTGATGCAGTGATGGTCCAAGACGCTATTAGCGAGAAGTTGGGTAATTTCATTCACTACATGGCGACATTTGTATCTGGATTTGTGGTGGGTTTCACTGCTGTGTGGCAATTAGCTCTTGTGACTCTAGCAGTGGTGCCCCTGATAGCTGTGATTGGAGCCATTCACACGACCACATTAGCCAAACTCTCAGGGAAGAGCCAAGAGGCTCTTTCACAAGCAGGACACACTGTAGAACAGACTGTAGTTCAAATTCGAGTTGTCATGTCGTACGTTGGGGAATCAAGAGCACTAGAAGCATACTCCTCAGCATTGAGAATTGCCCAGAAGCTTGGTTACAAGACTGGATTTGCTAAAGGAATGGGACTTGGAGCAACTTACTTTGTAGTCTTCTGCTGTTATGCACTTCTTTTATGGTATGGGGGTTATCTTGTTAGGCACCACTTCACCAATGGAGGTCTTGCCATAGCCACCATGTTTTCGGTCATGATAGGTGGACTGGCTTTGGGGCAATCTGCTCCAAGCATGGGCGCATTTGCAAAGGCTAAAGTTGCAGCTGCCAAGATATTTCGGATCATTGACCACAAGCCAGGCATGGACCGAAACAGTGAATCAGGGGTTGAATTGGAATCTGTTACAGGGCTAGTGGAGCTGAAAAATGTGGATTTCTCCTACCCATCAAGGCAGGATGTTCGTATTCTCAACAATTTCTCTTTGAATGTTCCGGCTGGAAAAACCATAGCTTTGGTCGGTAGCAGTGGCTCTGGTAAAAGCACTGTGGTCTCCCTCATTGAGAGATTTTATGACCCCTCCTCAGGACAAGTTCTGCTAGATGGACATGACATAAAGACATTGAAATTAAAGTGGCTAAGGCAGCAGATAGGGCTTGTGAGCCAAGAGCCTGCTCTGTTTGCTACCACCATTAAAGAGAATATACTTTTGGGGAGGCCTGATGCAGACCAAGTTGAGATTGAAGAAGCTGCCAGAGTTGCCAATGCTCATTCATTCATTGTCAAACTTCCTGATGGTTTTGATACTCAGGTAGGGGAAAGAGGAGTGCAACTGTCTGGAGGACAGAAGCAGAGGATAGCCATAGCAAGGGCAATGCTTAAAAACCCAGCAATCCTTCTCTTAGATGAGGCAACAAGTGCATTGGACTCTGAGTCGGAAAAGCTGGTGCAAGAAGCCCTGGACCGGTTTATGATAGGCAGAACAACTCTTGTCATTGCTCACCGCCTCTCAACCATTCGCAAAGCTGACCTTGTAGCTGTACTCCAGCAGGGAAGTGTTTCTGAAATTGGAACCCATGATGAACTCTTTTCTAAAGGAGAAAATGGTGTTTATGCCAAGCTCATTCGAATGCAAGAGGCAGCTCATGAGACCGCTCTCAACAATGCCAGAAAGAGTAGTGCTAGGCCTTCTAGTGCAAGAAACTCTGTTAGCTCACCAATAATCGCCCGAAATTCTTCATATGGTCGATCACCATATTCACGCAGGCTCTCTGACTTTTCCACTTCTGATTTTAGTCTCTCCCTTGATGCCACACACCCCAATTACCGTCTAGAAAAGCTTGCCTTCAAGGAGCAAGCCAGTTCCTTCTGGCGCCTTGCCAAGATGAACTCTCCTGAATGGGTGTATGCATTAGTTGGTTCAATTGGCTCTGTTGTTTGTGGTTCTCTTAGTGCTTTCTTTGCATATGTTCTAAGTGCAGTCCTCAGTGTCTACTACAATCCGGACCATGATTTCATGATCAAGCAAATTAATAAGTACTGCTATTTGTTAATTGGACTTTCATCAGCTGCACTACTCTTCAACACGCTACAACATTCTTTCTGGGATATTGTGGGAGAAAATCTTACAAAACGGGTGAGGGAGAAAATGCTGACAGCAGTGTTGAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCAGCAAGGCTGGCCCTTGATGCCAACAATGTCAGATCAGCCATTGGAGACAGGATTTCTGTTATTGTACAGAACACAGCACTCATGCTAGTCGCTTGCACTGCAGGATTTGTTTTGCAATGGCGCCTTGCCCTTGTCCTCGTAGCTGTCTTCCCTGTTGTTGTTGCCGCCACAGTTTTGCAGGTATTCCTTGTTTTTTGCCTTAATAGTTCCACCATGCATGTTGACAGTGTTCAGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0008150 GO:0008361 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009639 GO:0009640 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009966 GO:0009987 GO:0010033 GO:0010315 GO:0010328 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0015399 GO:0015405 GO:0015562 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0023051 GO:0030054 GO:0032501 GO:0032502 GO:0032535 GO:0042221 GO:0042623 GO:0042626 GO:0043207 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0043492 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0060918 GO:0060919 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080161 GO:0090066 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

770

Amino Acids

84.1

Weight (kDa)

8.74

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	2 - 206	7.4e-42	ABC transporter transmembrane region
ABC_tran	PF00005	275 - 424	1.5e-35	ABC transporter
ABC_membrane	PF00664	593 - 749	1.7e-30	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36910
fragaria_vesca	FvH4_6g16450 FvH4_6g16450 FvH4_6g16450
malus_domestica	MD04G1092800.v1.1
prunus_persica	Prupe.7G129600_v2.0.a1
pyrus_communis	pycom04g08730 pycom04g08740 pycom12g11150
rosa_chinensis	RchiOBHm_Chr3g0470311
rosa_laevigata	RLG00000024279
rosa_multiflora	Rmu_sc0001093.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410950
rosa_rugosa	Rorug03G0108000
rosa_samantha	Rh3AG157800 Rh3BG182100 Rh3DG192800
rosa_wichuraiana	Rw3G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2242
AccB1I	GGYRCC	4 cut(s)	259, 561, 1725, 2193
AccBSI	CCGCTC	1 cut(s)	1508
AccI	GTMKAC	1 cut(s)	1845
AccIII	TCCGGA	1 cut(s)	1855
AciI	CCGC	3 cut(s)	1357, 1506, 2238
AclWI	GGATC	2 cut(s)	44, 704
AcsI	RAATTY	2 cut(s)	375, 1585
AcyI	GRCGYC	2 cut(s)	1726, 2194
AfaI	GTAC	5 cut(s)	44, 395, 1395, 1892, 2139
AfiI	CCNNNNNNNGG	6 cut(s)	15, 33, 650, 938, 1221, 1317
AgeI	ACCGGT	1 cut(s)	1317
AhdI	GACNNNNNGTC	1 cut(s)	1285
AjnI	CCWGG	4 cut(s)	63, 712, 1311, 2063
AjuI	GAANNNNNNNTTGG	2 cut(s)	1046, 1078
AleI	CACNNNNGTG	1 cut(s)	224
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	4 cut(s)	910, 1496, 1655, 2112
AlwI	GGATC	2 cut(s)	44, 704
Aor13HI	TCCGGA	1 cut(s)	1855
AoxI	GGCC	3 cut(s)	1070, 1538, 2082
ApeKI	GCWGC	8 cut(s)	53, 677, 680, 997, 1103, 1493, 1922, 2072
ApoI	RAATTY	2 cut(s)	375, 1585
AseI	ATTAAT	1 cut(s)	1884
AsiGI	ACCGGT	1 cut(s)	1317
Asp700I	GAANNNNTTC	2 cut(s)	1411, 1588
AspLEI	GCGC	3 cut(s)	656, 1728, 2196
AspS9I	GGNCC	6 cut(s)	6, 139, 721, 1315, 1858, 2083
AsuHPI	GGTGA	5 cut(s)	562, 1346, 1560, 1596, 2002
AsuII	TTCGAA	2 cut(s)	94, 1480
AvaII	GGWCC	5 cut(s)	6, 139, 721, 1315, 1858
AxyI	CCTNAGG	1 cut(s)	937
BaeGI	GKGCMC	1 cut(s)	264
BaeI	ACNNNNGTAYC	6 cut(s)	75, 108, 180, 213, 1149, 1182
BanI	GGYRCC	4 cut(s)	259, 561, 1725, 2193
BarI	GAAGNNNNNNTAC	2 cut(s)	443, 475
BbsI	GAAGAC	2 cut(s)	505, 2212
Bbv12I	GWGCWC	1 cut(s)	415
BbvCI	CCTCAGC	1 cut(s)	430
BbvI	GCAGC	8 cut(s)	40, 667, 689, 1009, 1090, 1505, 1909, 2084
BccI	CCATC	5 cut(s)	125, 130, 808, 950, 1142
BcgI	CGANNNNNNTGC	2 cut(s)	797, 831
BciT130I	CCWGG	4 cut(s)	65, 714, 1313, 2065
BclI	TGATCA	2 cut(s)	1872, 2041
BcoDI	GTCTC	4 cut(s)	910, 1496, 1655, 2112
BfaI	CTAG	8 cut(s)	251, 416, 767, 953, 1536, 1545, 1685, 2159
BfmI	CTRYAG	3 cut(s)	354, 366, 2172
BfoI	RGCGCY	2 cut(s)	1729, 2197
BfuAI	ACCTGC	1 cut(s)	2242
BisI	GCNGC	9 cut(s)	54, 678, 681, 998, 1104, 1494, 1923, 2073, 2238
BlsI	GCNGC	9 cut(s)	55, 679, 682, 999, 1105, 1495, 1924, 2074, 2239
BmcAI	AGTACT	1 cut(s)	1892
Bme1390I	CCNGG	4 cut(s)	65, 714, 1313, 2065
Bme18I	GGWCC	5 cut(s)	6, 139, 721, 1315, 1858
BmeRI	GACNNNNNGTC	1 cut(s)	1285
BmgT120I	GGNCC	6 cut(s)	6, 139, 721, 1315, 1858, 2083
BmiI	GGNNCC	6 cut(s)	261, 283, 563, 1426, 1727, 2195
BmrFI	CCNGG	4 cut(s)	65, 714, 1313, 2065
BmsI	GCATC	4 cut(s)	118, 1066, 1651, 2080
BpiI	GAAGAC	2 cut(s)	505, 2212
BpmI	CTGGAG	2 cut(s)	1212, 1382
Bpu10I	CCTNAGC	2 cut(s)	430, 992
Bpu14I	TTCGAA	2 cut(s)	94, 1480
BsaBI	GATNNNNATC	1 cut(s)	35
BsaHI	GRCGYC	2 cut(s)	1726, 2194
BsaI	GGTCTC	2 cut(s)	910, 1496
BsaJI	CCNNGG	1 cut(s)	1311
BsaWI	WCCGGW	3 cut(s)	8, 1317, 1855
Bsc4I	CCNNNNNNNGG	6 cut(s)	15, 33, 650, 938, 1221, 1317
Bse118I	RCCGGY	1 cut(s)	1317
Bse1I	ACTGG	3 cut(s)	472, 627, 1713
Bse21I	CCTNAGG	1 cut(s)	937
Bse3DI	GCAATG	3 cut(s)	1233, 1347, 2195
Bse8I	GATNNNNATC	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	1855
BseBI	CCWGG	4 cut(s)	65, 714, 1313, 2065
BseDI	CCNNGG	1 cut(s)	1311
BseGI	GGATG	1 cut(s)	817
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	6 cut(s)	15, 33, 650, 938, 1221, 1317
BseMI	GCAATG	3 cut(s)	1233, 1347, 2195
BseMII	CTCAG	6 cut(s)	327, 444, 951, 1175, 1275, 1852
BseNI	ACTGG	3 cut(s)	472, 627, 1713
BseRI	GAGGAG	3 cut(s)	418, 925, 1191
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	8 cut(s)	40, 667, 689, 1009, 1090, 1505, 1909, 2084
BseYI	CCCAGC	1 cut(s)	1240
BsgI	GTGCAG	2 cut(s)	1851, 1908
BshFI	GGCC	3 cut(s)	1072, 1540, 2084
BshNI	GGYRCC	4 cut(s)	259, 561, 1725, 2193
BshTI	ACCGGT	1 cut(s)	1317
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	4 cut(s)	9, 848, 1318, 1856
BsiWI	CGTACG	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	6 cut(s)	15, 33, 650, 938, 1221, 1317
BsmAI	GTCTC	4 cut(s)	910, 1496, 1655, 2112
BsmFI	GGGAC	1 cut(s)	501
BsmI	GAATGC	1 cut(s)	1488
BsnI	GGCC	3 cut(s)	1072, 1540, 2084
Bso31I	GGTCTC	2 cut(s)	910, 1496
Bsp119I	TTCGAA	2 cut(s)	94, 1480
Bsp1286I	GDGCHC	2 cut(s)	264, 415
Bsp13I	TCCGGA	1 cut(s)	1855
Bsp1407I	TGTACA	1 cut(s)	2137
Bsp143I	GATC	6 cut(s)	36, 696, 1601, 1872, 2041, 2105
BspACI	CCGC	3 cut(s)	1357, 1506, 2238
BspANI	GGCC	3 cut(s)	1072, 1540, 2084
BspCNI	CTCAG	6 cut(s)	326, 443, 950, 1174, 1276, 1851
BspEI	TCCGGA	1 cut(s)	1855
BspHI	TCATGA	3 cut(s)	609, 1498, 1869
BspLI	GGNNCC	6 cut(s)	261, 283, 563, 1426, 1727, 2195
BspMAI	CTGCAG	1 cut(s)	2176
BspMI	ACCTGC	1 cut(s)	2242
BspPI	GGATC	2 cut(s)	44, 704
BspQI	GCTCTTC	1 cut(s)	314
BspT104I	TTCGAA	2 cut(s)	94, 1480
BspT107I	GGYRCC	4 cut(s)	259, 561, 1725, 2193
BspTNI	GGTCTC	2 cut(s)	910, 1496
BsrBI	CCGCTC	1 cut(s)	1508
BsrDI	GCAATG	3 cut(s)	1233, 1347, 2195
BsrFI	RCCGGY	1 cut(s)	1317
BsrGI	TGTACA	1 cut(s)	2137
BsrI	ACTGG	3 cut(s)	472, 627, 1713
BssAI	RCCGGY	1 cut(s)	1317
BssECI	CCNNGG	1 cut(s)	1311
BssMI	GATC	6 cut(s)	36, 696, 1601, 1872, 2041, 2105
BssNI	GRCGYC	2 cut(s)	1726, 2194
Bst2UI	CCWGG	4 cut(s)	65, 714, 1313, 2065
Bst4CI	ACNGT	8 cut(s)	355, 367, 731, 901, 1188, 1682, 2245, 2300
Bst6I	CTCTTC	2 cut(s)	314, 1937
BstACI	GRCGYC	2 cut(s)	1726, 2194
BstAPI	GCANNNNNTGC	1 cut(s)	1271
BstAUI	TGTACA	1 cut(s)	2137
BstBI	TTCGAA	2 cut(s)	94, 1480
BstC8I	GCNNGC	6 cut(s)	1026, 1619, 1695, 1710, 2082, 2167
BstF5I	GGATG	1 cut(s)	817
BstH2I	RGCGCY	2 cut(s)	1729, 2197
BstHHI	GCGC	3 cut(s)	656, 1728, 2196
BstKTI	GATC	6 cut(s)	39, 699, 1604, 1875, 2044, 2108
BstMAI	GTCTC	4 cut(s)	910, 1496, 1655, 2112
BstMBI	GATC	6 cut(s)	36, 696, 1601, 1872, 2041, 2105
BstNI	CCWGG	4 cut(s)	65, 714, 1313, 2065
BstNSI	RCATGY	1 cut(s)	2294
BstSCI	CCNGG	4 cut(s)	63, 712, 1311, 2063
BstSFI	CTRYAG	3 cut(s)	354, 366, 2172
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	8 cut(s)	40, 667, 689, 1009, 1090, 1505, 1909, 2084
BstV2I	GAAGAC	2 cut(s)	505, 2212
BstXI	CCANNNNNNTGG	2 cut(s)	455, 868
Bsu36I	CCTNAGG	1 cut(s)	937
BsuRI	GGCC	3 cut(s)	1072, 1540, 2084
BtsCI	GGATG	1 cut(s)	817
BtsI	GCAGTG	6 cut(s)	138, 219, 261, 886, 2019, 2169
BveI	ACCTGC	1 cut(s)	2242
Cac8I	GCNNGC	6 cut(s)	1026, 1619, 1695, 1710, 2082, 2167
CciI	TCATGA	3 cut(s)	609, 1498, 1869
CfoI	GCGC	3 cut(s)	656, 1728, 2196
Cfr10I	RCCGGY	1 cut(s)	1317
Cfr13I	GGNCC	6 cut(s)	6, 139, 721, 1315, 1858, 2083
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	5 cut(s)	43, 394, 1394, 1891, 2138
CspAI	ACCGGT	1 cut(s)	1317
CviQI	GTAC	5 cut(s)	43, 394, 1394, 1891, 2138
DinI	GGCGCC	2 cut(s)	1727, 2195
DpnI	GATC	6 cut(s)	38, 698, 1603, 1874, 2043, 2107
DpnII	GATC	6 cut(s)	36, 696, 1601, 1872, 2041, 2105
DriI	GACNNNNNGTC	1 cut(s)	1285
Eam1104I	CTCTTC	2 cut(s)	314, 1937
Eam1105I	GACNNNNNGTC	1 cut(s)	1285
EarI	CTCTTC	2 cut(s)	314, 1937
Eco147I	AGGCCT	2 cut(s)	1072, 1540
Eco31I	GGTCTC	2 cut(s)	910, 1496
Eco47I	GGWCC	5 cut(s)	6, 139, 721, 1315, 1858
Eco81I	CCTNAGG	1 cut(s)	937
EcoRII	CCWGG	4 cut(s)	63, 712, 1311, 2063
EcoT22I	ATGCAT	2 cut(s)	1765, 2292
EgeI	GGCGCC	2 cut(s)	1727, 2195
EheI	GGCGCC	2 cut(s)	1727, 2195
FalI	AAGNNNNNCTT	6 cut(s)	318, 350, 1368, 1400, 1682, 1714
FaqI	GGGAC	1 cut(s)	501
FauNDI	CATATG	2 cut(s)	1594, 1819
FbaI	TGATCA	2 cut(s)	1872, 2041
FblI	GTMKAC	1 cut(s)	1845
Fnu4HI	GCNGC	9 cut(s)	54, 678, 681, 998, 1104, 1494, 1923, 2073, 2238
FokI	GGATG	1 cut(s)	824
Fsp4HI	GCNGC	9 cut(s)	54, 678, 681, 998, 1104, 1494, 1923, 2073, 2238
FspBI	CTAG	8 cut(s)	251, 416, 767, 953, 1536, 1545, 1685, 2159
GlaI	GCGC	3 cut(s)	655, 1727, 2195
GluI	GCNGC	9 cut(s)	54, 678, 681, 998, 1104, 1494, 1923, 2073, 2238
GsaI	CCCAGC	1 cut(s)	1244
GsuI	CTGGAG	2 cut(s)	1212, 1382
HaeII	RGCGCY	2 cut(s)	1729, 2197
HaeIII	GGCC	3 cut(s)	1072, 1540, 2084
HapII	CCGG	4 cut(s)	9, 848, 1318, 1856
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	3 cut(s)	656, 1728, 2196
Hin1I	GRCGYC	2 cut(s)	1726, 2194
Hin6I	GCGC	3 cut(s)	654, 1726, 2194
HinP1I	GCGC	3 cut(s)	654, 1726, 2194
HincII	GTYRAC	1 cut(s)	2296
HindII	GTYRAC	1 cut(s)	2296
HindIII	AAGCTT	2 cut(s)	452, 1691
HinfI	GANTC	6 cut(s)	247, 404, 734, 752, 1280, 1286
HpaII	CCGG	4 cut(s)	9, 848, 1318, 1856
HphI	GGTGA	5 cut(s)	562, 1346, 1560, 1596, 2002
Hpy166II	GTNNAC	4 cut(s)	6, 620, 1846, 2296
Hpy188I	TCNGA	8 cut(s)	103, 696, 1285, 1291, 1417, 1627, 1642, 2105
Hpy8I	GTNNAC	4 cut(s)	6, 620, 1846, 2296
HpyAV	CCTTC	4 cut(s)	1259, 1551, 1708, 1729
HpyCH4III	ACNGT	8 cut(s)	355, 367, 731, 901, 1188, 1682, 2245, 2300
HpyCH4IV	ACGT	1 cut(s)	396
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	2 cut(s)	1726, 2194
HspAI	GCGC	3 cut(s)	654, 1726, 2194
KasI	GGCGCC	2 cut(s)	1725, 2193
Kpn2I	TCCGGA	1 cut(s)	1855
Ksp22I	TGATCA	2 cut(s)	1872, 2041
Kzo9I	GATC	6 cut(s)	36, 696, 1601, 1872, 2041, 2105
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	5 cut(s)	281, 494, 646, 772, 1705
Lsp1109I	GCAGC	8 cut(s)	40, 667, 689, 1009, 1090, 1505, 1909, 2084
LweI	GCATC	4 cut(s)	118, 1066, 1651, 2080
MaeI	CTAG	8 cut(s)	251, 416, 767, 953, 1536, 1545, 1685, 2159
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	3 cut(s)	244, 458, 757
MalI	GATC	6 cut(s)	38, 698, 1603, 1874, 2043, 2107
MbiI	CCGCTC	1 cut(s)	1508
MboI	GATC	6 cut(s)	36, 696, 1601, 1872, 2041, 2105
MboII	GAAGA	6 cut(s)	331, 505, 1109, 1581, 1924, 2212
MfeI	CAATTG	1 cut(s)	1776
MhlI	GDGCHC	2 cut(s)	264, 415
Mly113I	GGCGCC	2 cut(s)	1726, 2194
MlyI	GAGTC	3 cut(s)	241, 1274, 1295
MmeI	TCCRAC	1 cut(s)	1269
Mph1103I	ATGCAT	2 cut(s)	1765, 2292
MroI	TCCGGA	1 cut(s)	1855
MroXI	GAANNNNTTC	2 cut(s)	1411, 1588
MseI	TTAA	6 cut(s)	983, 1047, 1233, 1884, 1904, 2274
MslI	CAYNNNNRTG	2 cut(s)	224, 1481
MspA1I	CMGCKG	2 cut(s)	680, 1922
MspI	CCGG	4 cut(s)	9, 848, 1318, 1856
MspR9I	CCNGG	4 cut(s)	65, 714, 1313, 2065
MunI	CAATTG	1 cut(s)	1776
Mva1269I	GAATGC	1 cut(s)	1488
MvaI	CCWGG	4 cut(s)	65, 714, 1313, 2065
NarI	GGCGCC	2 cut(s)	1726, 2194
NdeI	CATATG	2 cut(s)	1594, 1819
NdeII	GATC	6 cut(s)	36, 696, 1601, 1872, 2041, 2105
NlaIV	GGNNCC	6 cut(s)	261, 283, 563, 1426, 1727, 2195
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	2 cut(s)	1765, 2292
NspI	RCATGY	1 cut(s)	2294
NspV	TTCGAA	2 cut(s)	94, 1480
OliI	CACNNNNGTG	1 cut(s)	224
PagI	TCATGA	3 cut(s)	609, 1498, 1869
PceI	AGGCCT	2 cut(s)	1072, 1540
PciSI	GCTCTTC	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	1488
PdmI	GAANNNNTTC	2 cut(s)	1411, 1588
PfeI	GAWTC	3 cut(s)	404, 734, 752
Pfl23II	CGTACG	1 cut(s)	393
PinAI	ACCGGT	1 cut(s)	1317
PkrI	GCNGC	9 cut(s)	55, 679, 682, 999, 1105, 1495, 1924, 2074, 2239
PleI	GAGTC	3 cut(s)	241, 1274, 1294
PluTI	GGCGCC	2 cut(s)	1729, 2197
PpsI	GAGTC	3 cut(s)	241, 1274, 1294
PshBI	ATTAAT	1 cut(s)	1884
Psp6I	CCWGG	4 cut(s)	63, 712, 1311, 2063
PspFI	CCCAGC	1 cut(s)	1240
PspGI	CCWGG	4 cut(s)	63, 712, 1311, 2063
PspLI	CGTACG	1 cut(s)	393
PspN4I	GGNNCC	6 cut(s)	261, 283, 563, 1426, 1727, 2195
PspPI	GGNCC	6 cut(s)	6, 139, 721, 1315, 1858, 2083
PstI	CTGCAG	1 cut(s)	2176
PvuII	CAGCTG	2 cut(s)	680, 1922
RsaI	GTAC	5 cut(s)	44, 395, 1395, 1892, 2139
RsaNI	GTAC	5 cut(s)	43, 394, 1394, 1891, 2138
RseI	CAYNNNNRTG	2 cut(s)	224, 1481
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	6 cut(s)	983, 1047, 1233, 1884, 1904, 2274
SatI	GCNGC	9 cut(s)	54, 678, 681, 998, 1104, 1494, 1923, 2073, 2238
Sau3AI	GATC	6 cut(s)	36, 696, 1601, 1872, 2041, 2105
Sau96I	GGNCC	6 cut(s)	6, 139, 721, 1315, 1858, 2083
ScaI	AGTACT	1 cut(s)	1892
SchI	GAGTC	3 cut(s)	241, 1274, 1295
ScrFI	CCNGG	4 cut(s)	65, 714, 1313, 2065
SduI	GDGCHC	2 cut(s)	264, 415
SfaNI	GCATC	4 cut(s)	118, 1066, 1651, 2080
SfcI	CTRYAG	3 cut(s)	354, 366, 2172
SfoI	GGCGCC	2 cut(s)	1727, 2195
SfuI	TTCGAA	2 cut(s)	94, 1480
SinI	GGWCC	5 cut(s)	6, 139, 721, 1315, 1858
SmiMI	CAYNNNNRTG	2 cut(s)	224, 1481
SseBI	AGGCCT	2 cut(s)	1072, 1540
SsiI	CCGC	3 cut(s)	1357, 1506, 2238
SspDI	GGCGCC	2 cut(s)	1725, 2193
SspMI	CTAG	8 cut(s)	251, 416, 767, 953, 1536, 1545, 1685, 2159
StuI	AGGCCT	2 cut(s)	1072, 1540
StyD4I	CCNGG	4 cut(s)	63, 712, 1311, 2063
TaaI	ACNGT	8 cut(s)	355, 367, 731, 901, 1188, 1682, 2245, 2300
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	6 cut(s)	23, 81, 94, 379, 1480, 1600
TaqII	GACCGA	2 cut(s)	595, 738
TatI	WGTACW	3 cut(s)	1393, 1890, 2137
TauI	GCSGC	1 cut(s)	2240
TfiI	GAWTC	3 cut(s)	404, 734, 752
Tru1I	TTAA	6 cut(s)	983, 1047, 1233, 1884, 1904, 2274
Tru9I	TTAA	6 cut(s)	983, 1047, 1233, 1884, 1904, 2274
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	8 cut(s)	53, 677, 680, 997, 1103, 1493, 1922, 2072
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	9 cut(s)	163, 1116, 1120, 1449, 1581, 1754, 1858, 1905, 2040
VpaK11BI	GGWCC	5 cut(s)	6, 139, 721, 1315, 1858
VspI	ATTAAT	1 cut(s)	1884
XapI	RAATTY	2 cut(s)	375, 1585
XbaI	TCTAGA	1 cut(s)	1684
XceI	RCATGY	1 cut(s)	2294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	1845
XmnI	GAANNNNTTC	2 cut(s)	1411, 1588
XspI	CTAG	8 cut(s)	251, 416, 767, 953, 1536, 1545, 1685, 2159
ZrmI	AGTACT	1 cut(s)	1892
Zsp2I	ATGCAT	2 cut(s)	1765, 2292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.