Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0013415

Physical Location & Seq

Genomic Coordinates Reverse (-)

15308706 .. 15314414

Gene Structure 5709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3990 bp

ATGTCACAAGATTCTCAGGGGATAAAGACGATTGAGCAGTGGAGATGGTCAGATATGCAAGGCCTTGAGCTTGTGACTGACCCTCCTCCTTCTTCTTCTGACCCATCTAAAACCAACCCAACAACAACAACAACTGCTAAAGAGCCAAGAGAAGCTCAAGCAATGGAGAGCTCTGCTGAGCCAACAACAAAGAAGGAGTCTAATGACAGCGGTGGAGGTGAGAAGCCTGAGGCTGTTCCAAGCATAGGCTTCGGAGAGGTTTTCAGATTCGCTGATGGATTGGATTACGTTCTGATGGGAATTGGGTCTGTTGGCGCAATCGTGCATGGTTGTTCTCTGCCTATCTTTCTTCGCTTCTTTGCTGATCTTGTCAACTCTTTCGGGGCAAATGCGAATGACATGGACAAGATGATGCAAGAGGTTTTGAAGTATGCATTGTACTTTCTTGTTGTGGGAGCTGCAATATGGGCTTCTTCATGGGCAGATTCGTGTTGGATGTGGACCGGAGAAAGGCAATCGACCAAGATGAGGATCAAGTACCTTGAAGCTGCTTTGAGCCAGGACATTCAGTTTTTCGATACAGAGGTTCGAACCTCCGATGTCGTTTTTGCCATCAACACTGATGCAGTGATGGTCCAAGACGCTATTAGCGAGAAGTTGGGTAATTTCATTCACTACATGGCGACATTTGTATCTGGATTCGTGGTGGGTTTCACTGCTGTGTGGCAATTAGCTCTTGTGACTCTAGCAGTGGTGCCCCTGATAGCTGTGATTGGAGCCATTCACACCACCACATTAGCCAAACTCTCAGGGAAGAGCCAAGAGGCTCTTTCACAAGCAGGACACACTGTAGAACAGACTGTAGTTCAAATTCGAGTTGTCATGTCGTACGTTGGGGAATCGAGAGCACTAGAAGCATACTCCTCAGCATTGAGAATTGCCCAGAAGCTTGGTTACAAGACTGGATTTGCTAAAGGAATGGGACTTGGAGCAACTTACTTTGTAGTCTTCTGCTGTTATGCACTTCTTTTATGGTATGGGGGTTATCTTGTCAGGCACCACTTCACCAATGGAGGTCTTGCCATAGCCACCATGTTTTCGGTCATGATAGGTGGACTGGCTTTGGGGCAATCTGCTCCAAGCATGGGCGCATTTGCAAAGGCTAAAGTTGCAGCTGCCAAGATATTTCGGATCATTGACCACAAGCCAGGCATGGACCGAAACAGTGAATCAGGGGTTGAATTGGAATCTGTTACAGGACTAGTGGAGCTGAAAAATGTGGATTTCTCCTACCCATCAAGGCAGGATGTTCGTATTCTCAACAATTTCTCTTTGAATGTTCCGGCTGGAAAAACCATAGCTTTGGTCGGTAGCAGTGGCTCTGGTAAAAGCACTGTGGTCTCCCTCATTGAGAGATTTTATGACCCCTCCTCAGGACAAGTTCTGCTAGATGGACATGACATAAAGACATTGAAATTAAAGTGGCTAAGGCAGCAGATAGGGCTTGTGAGCCAAGAGCCTGCTCTGTTTGCTACCACCATTAAAGAGAATATACTTTTGGGGAGGCCTGATGCAGACCAAGTTGAGATTGAAGAAGCTGCCAGAGTTGCCAATGCTCATTCATTCATTGTCAAACTTCCTGATGGTTTTGATACTCAGGTAGGGGAAAGAGGAGTGCAACTGTCTGGAGGACAGAAGCAGAGGATAGCCATAGCAAGGGCAATGCTTAAAAACCCAGCAATACTTCTCTTAGATGAGGCAACAAGTGCATTGGACTCTGAAACAACTCTTGTCATTGCTCACCGCCTCTCAACCATTCGCAAAGCTGACCTTGTAGCTGTACTCCAGCAGGGAAGTGTTTCTGAAATTGGAACCCATGATGAACTCTTTTCTAAAGGAGAAAATGGTGTTTATGCCAAGCTCATTCGAATGCAAGAGGCAGCTCATGAGACCGCTCTCAACAATGCCAGAAAGAGTAGTGCTAGGCCTTCTAGTGCAAGAAACTCAGTTAGCTCACCAATAATCGCCCGAAATTCTTCATACGGTCGATCACCATATTCACGCAGGCTCTCTGACTTTTCCACTTCTGATTTTAGTCTCTCCCTTGATGCCACACACCCCAATTACCGTCTAGAAAAGCTTGCCTTCAAGGAGCAAGCCTGTTCCTTCTGGCGCCTTGCCAAGATGAACTCTCCTGAATGGGTGTATGCATTAGTTGGTTCAATTGGCTCTGTTGTTTGTGGTTCTCTTAGTGCTTTCTTTGCATATGTTCTAAGTGCAGTCCTCAGTGTCTACTACAATCCGGACCATGATTTCATGATCAAGCAAATTAATAAGTACTGCTATTTGTTAATTGGACTTTCATCAGCTGCACTACTCTTCAACACGCTACAACATTCTTTCTGGGATATTGTGGGAGAAAATCTTACAAAACGGGTGAGGGAGAAAATGCTGACAGCAGTGTTGAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCAGCAAGGCTGGCCCTTGATGCCAACAATGTCAGATCAGCAATTGGAGACAGGATTTCTGTTATTGTACAGAACACAGCACTCATGCTAGTCGCTTGCACTGCAGGATTTGTTTTGCAATGGCGCCTTGCCCTTGTCCTCGTAGCTGTCTTCCCTGTTGTTGTTGCCGCCACAGTTTTGCAGAAAATGTTCATGACCGGTTTCTCGGGAGACCTTGAAGCTGCACATGCCAAGGCCACCCAACTAGCTGGGGAGGCCATAGCCAATGTAAGGACTGTTGCTGCATTCAACTCCGAGGGAAAAATTGTTGGTCTCTTTTCCTCCAACCTGCAGATTCCCCTGCGTCGGTGTTTTTGGAAGGGTCAGATTGCAGGAAGTGGATTTGGGATAGCTCAGTTTGCACTTTATGCGTCCTATGCTCTAGGTCTTTGGTATGCTTCCTGGCTTGTAAAGCATGGAATCTCAGATTTCTCAAAGGCGATCCGAGTTTTCATGGTCCTCATGGTATCTGCTAACGGTGCAGCAGAGACACTAACCCTGGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCAATCAGTTTTTGAGCTCCTTGACCGCAAAACTGAAATTGAACCTGATGATATTGATGCTACTGCAGTGCCTGACCGTCTGCGTGGAGAAGTTGAGTTTAAGCATGTAGACTTTTCGTATCCTTCTCGACCTGATGTTCCTGTGTTTCGTGATCTCTCCCTCCGTGCCCGAGCAGGCAAGACTCTTGCTCTTGTTGGTCCTAGTGGGTGTGGAAAGAGCTCAGTCATTTCATTAGTACAGCGGTTTTACGACCCAACATCAGGAAGAGTTATTATTGATGGAAAGGATATTCGCAAATACAATCTCAAGTCTCTCAGAAGGCACATTGCTGTGGTTCCCCAGGAGCCATGCCTCTTTGCTACAACTATATATGAAAATATTGCTTATGGACACGAGTCAGCAACTGAGGCTGAGATCATTGAAGCTGCTAATCTAGCCAATGCTCACAAGTTTGTATCTGCATTGCCAGATGGCTACAAAACGTTTGTTGGGGAGAGGGGAATTCAACTATCTGGAGGACAGAAACAAAGGATTGCTATTGCCAGGGCTTTACTGAGGAAGGCAGAGCTTATGCTTCTCGATGAAGCCACAAGCGCACTTGATGCCGAGTCCGAGAGATCTATTCAAGAAGCTCTGGAGCGCGCTTGTTCAGGAAAAACCACAATTGTGGTTGCACACAGGCTATCAACTATTAGAAATGCCAGTGTTATTGCGGTAATTGATGATGGGAAAGTGGCAGAGCAAGGATCACACAACCATCTATTGAAAAACTACCCGGACGGGTGTTATGCGCGCATGATACAGCTACAAAGATTTTCACACAGCCAGGCCATTGGAATAGCATCAGGTTCAAGTTCTTCAGTAAGACCAAGGGAAGAGGAAGAAAGAGAAGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0008150 GO:0008361 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009639 GO:0009640 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009966 GO:0009987 GO:0010033 GO:0010315 GO:0010328 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0015399 GO:0015405 GO:0015562 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0023051 GO:0030054 GO:0032501 GO:0032502 GO:0032535 GO:0042221 GO:0042623 GO:0042626 GO:0043207 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0043492 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0060918 GO:0060919 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080161 GO:0090066 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1329

Amino Acids

144.79

Weight (kDa)

7.59

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	101 - 371	1e-50	ABC transporter transmembrane region
ABC_tran	PF00005	440 - 589	3.3e-35	ABC transporter
ABC_membrane	PF00664	742 - 1008	2.1e-51	ABC transporter transmembrane region
ABC_tran	PF00005	1080 - 1228	2.4e-34	ABC transporter
SMC_N	PF02463	1116 - 1268	7.3e-06	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36910
fragaria_vesca	FvH4_6g16450 FvH4_6g16450 FvH4_6g16450
malus_domestica	MD04G1092800.v1.1
prunus_persica	Prupe.7G129600_v2.0.a1
pyrus_communis	pycom04g08730 pycom04g08740 pycom12g11150
rosa_chinensis	RchiOBHm_Chr3g0470311
rosa_laevigata	RLG00000024279
rosa_multiflora	Rmu_sc0001093.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410950
rosa_rugosa	Rorug03G0108000
rosa_samantha	Rh3AG157800 Rh3BG182100 Rh3DG192800
rosa_wichuraiana	Rw3G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2853
AccB1I	GGYRCC	4 cut(s)	754, 1056, 2172, 2640
AccBSI	CCGCTC	1 cut(s)	1955
AccI	GTMKAC	2 cut(s)	2292, 3198
AccII	CGCG	2 cut(s)	3732, 3883
AccIII	TCCGGA	1 cut(s)	2302
AciI	CCGC	7 cut(s)	210, 1804, 1953, 2685, 3115, 3331, 3803
AclI	AACGTT	1 cut(s)	3572
AclWI	GGATC	4 cut(s)	539, 1199, 2992, 3844
AcsI	RAATTY	3 cut(s)	870, 2032, 3591
AcuI	CTGAAG	1 cut(s)	3933
AcyI	GRCGYC	2 cut(s)	2173, 2641
AfaI	GTAC	7 cut(s)	440, 539, 890, 1842, 2339, 2586, 3327
AfiI	CCNNNNNNNGG	9 cut(s)	245, 510, 528, 1145, 1433, 1716, 2787, 2862, 3350
AgeI	ACCGGT	1 cut(s)	2714
AhlI	ACTAGT	1 cut(s)	1261
AjnI	CCWGG	8 cut(s)	558, 1207, 2510, 2957, 3054, 3429, 3632, 3915
AjuI	GAANNNNNNNTTGG	2 cut(s)	1541, 1573
AleI	CACNNNNGTG	2 cut(s)	719, 3755
Alw21I	GWGCWC	4 cut(s)	173, 910, 3108, 3311
Alw26I	GTCTC	8 cut(s)	1405, 1943, 2102, 2559, 2721, 2834, 3038, 3405
AlwI	GGATC	4 cut(s)	539, 1199, 2992, 3844
AlwNI	CAGNNNCTG	2 cut(s)	3161, 3494
Ama87I	CYCGRG	2 cut(s)	2722, 3258
Aor13HI	TCCGGA	1 cut(s)	2302
AoxI	GGCC	7 cut(s)	61, 1565, 1985, 2529, 2751, 2772, 3918
ApoI	RAATTY	3 cut(s)	870, 2032, 3591
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AseI	ATTAAT	1 cut(s)	2331
AsiGI	ACCGGT	1 cut(s)	2714
Asp700I	GAANNNNTTC	3 cut(s)	1858, 2035, 2705
AspLEI	GCGC	9 cut(s)	317, 1151, 2175, 2643, 3686, 3732, 3734, 3883, 3885
AspS9I	GGNCC	7 cut(s)	501, 634, 1216, 2305, 2530, 3013, 3287
AsuC2I	CCSGG	1 cut(s)	3866
AsuHPI	GGTGA	6 cut(s)	230, 1057, 1793, 2007, 2043, 2449
AsuII	TTCGAA	2 cut(s)	589, 1927
AvaI	CYCGRG	2 cut(s)	2722, 3258
AvaII	GGWCC	6 cut(s)	501, 634, 1216, 2305, 3013, 3287
AxyI	CCTNAGG	2 cut(s)	228, 1432
BaeGI	GKGCMC	2 cut(s)	759, 3259
BaeI	ACNNNNGTAYC	6 cut(s)	570, 603, 675, 708, 1644, 1677
BanI	GGYRCC	4 cut(s)	754, 1056, 2172, 2640
BanII	GRGCYC	3 cut(s)	173, 3108, 3311
BarI	GAAGNNNNNNTAC	2 cut(s)	938, 970
BauI	CACGAG	1 cut(s)	3482
BbsI	GAAGAC	2 cut(s)	1000, 2659
Bbv12I	GWGCWC	4 cut(s)	173, 910, 3108, 3311
BbvCI	CCTCAGC	1 cut(s)	925
BcgI	CGANNNNNNTGC	4 cut(s)	232, 266, 1292, 1326
BciT130I	CCWGG	8 cut(s)	560, 1209, 2512, 2959, 3056, 3431, 3634, 3917
BciVI	GTATCC	1 cut(s)	3219
BclI	TGATCA	2 cut(s)	2319, 2488
BcnI	CCSGG	1 cut(s)	3866
BcoDI	GTCTC	8 cut(s)	1405, 1943, 2102, 2559, 2721, 2834, 3038, 3405
BcuI	ACTAGT	1 cut(s)	1261
BfmI	CTRYAG	5 cut(s)	849, 861, 2619, 2846, 3153
BfoI	RGCGCY	2 cut(s)	2176, 2644
BfuAI	ACCTGC	1 cut(s)	2853
BfuI	GTATCC	1 cut(s)	3219
BglII	AGATCT	1 cut(s)	3707
BlpI	GCTNAGC	1 cut(s)	177
BmcAI	AGTACT	1 cut(s)	2339
Bme1390I	CCNGG	9 cut(s)	560, 1209, 2512, 2959, 3056, 3431, 3634, 3866, 3917
Bme18I	GGWCC	6 cut(s)	501, 634, 1216, 2305, 3013, 3287
BmeT110I	CYCGRG	2 cut(s)	2722, 3258
BmgT120I	GGNCC	7 cut(s)	501, 634, 1216, 2305, 2530, 3013, 3287
BmiI	GGNNCC	9 cut(s)	756, 778, 1058, 1873, 2174, 2642, 3060, 3426, 3435
BmrFI	CCNGG	9 cut(s)	560, 1209, 2512, 2959, 3056, 3431, 3634, 3866, 3917
BmsI	GCATC	8 cut(s)	402, 613, 1561, 2098, 2527, 3136, 3682, 3941
BoxI	GACNNNNGTC	1 cut(s)	3484
BpiI	GAAGAC	2 cut(s)	1000, 2659
BpmI	CTGGAG	4 cut(s)	1707, 1829, 3624, 3746
Bpu10I	CCTNAGC	2 cut(s)	925, 1487
Bpu1102I	GCTNAGC	1 cut(s)	177
Bpu14I	TTCGAA	2 cut(s)	589, 1927
BpuEI	CTTGAG	3 cut(s)	86, 141, 3380
BpuMI	CCSGG	1 cut(s)	3866
BsaBI	GATNNNNATC	1 cut(s)	530
BsaHI	GRCGYC	2 cut(s)	2173, 2641
BsaI	GGTCTC	4 cut(s)	1405, 1943, 2721, 2834
BsaJI	CCNNGG	6 cut(s)	2748, 2811, 3054, 3429, 3633, 3959
BsaWI	WCCGGW	3 cut(s)	503, 2302, 2714
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 3043, 3073
Bsc4I	CCNNNNNNNGG	9 cut(s)	245, 510, 528, 1145, 1433, 1716, 2787, 2862, 3350
Bse118I	RCCGGY	1 cut(s)	2714
Bse1I	ACTGG	3 cut(s)	967, 1122, 3792
Bse21I	CCTNAGG	2 cut(s)	228, 1432
Bse3DI	GCAATG	6 cut(s)	168, 1728, 1794, 2642, 3414, 3551
Bse8I	GATNNNNATC	1 cut(s)	530
BseAI	TCCGGA	1 cut(s)	2302
BseBI	CCWGG	8 cut(s)	560, 1209, 2512, 2959, 3056, 3431, 3634, 3917
BseDI	CCNNGG	6 cut(s)	2748, 2811, 3054, 3429, 3633, 3959
BseGI	GGATG	2 cut(s)	501, 1312
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	9 cut(s)	245, 510, 528, 1145, 1433, 1716, 2787, 2862, 3350
BseMI	GCAATG	6 cut(s)	168, 1728, 1794, 2642, 3414, 3551
BseNI	ACTGG	3 cut(s)	967, 1122, 3792
BsePI	GCGCGC	2 cut(s)	3730, 3881
BseRI	GAGGAG	4 cut(s)	75, 913, 1420, 1686
BseSI	GKGCMC	2 cut(s)	759, 3259
BseYI	CCCAGC	2 cut(s)	1735, 2765
BsgI	GTGCAG	4 cut(s)	2298, 2355, 2724, 3057
Bsh1236I	CGCG	2 cut(s)	3732, 3883
Bsh1285I	CGRYCG	1 cut(s)	2047
BshFI	GGCC	7 cut(s)	63, 1567, 1987, 2531, 2753, 2774, 3920
BshNI	GGYRCC	4 cut(s)	754, 1056, 2172, 2640
BshTI	ACCGGT	1 cut(s)	2714
BsiEI	CGRYCG	1 cut(s)	2047
BsiHKAI	GWGCWC	4 cut(s)	173, 910, 3108, 3311
BsiHKCI	CYCGRG	2 cut(s)	2722, 3258
BsiSI	CCGG	5 cut(s)	504, 1343, 2303, 2715, 3866
BsiWI	CGTACG	1 cut(s)	888
BslFI	GGGAC	1 cut(s)	996
BslI	CCNNNNNNNGG	9 cut(s)	245, 510, 528, 1145, 1433, 1716, 2787, 2862, 3350
BsmAI	GTCTC	8 cut(s)	1405, 1943, 2102, 2559, 2721, 2834, 3038, 3405
BsmFI	GGGAC	1 cut(s)	996
BsmI	GAATGC	2 cut(s)	1935, 2801
BsnI	GGCC	7 cut(s)	63, 1567, 1987, 2531, 2753, 2774, 3920
Bso31I	GGTCTC	4 cut(s)	1405, 1943, 2721, 2834
BsoBI	CYCGRG	2 cut(s)	2722, 3258
Bsp119I	TTCGAA	2 cut(s)	589, 1927
Bsp1286I	GDGCHC	6 cut(s)	173, 759, 910, 3108, 3259, 3311
Bsp13I	TCCGGA	1 cut(s)	2302
Bsp1407I	TGTACA	1 cut(s)	2584
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	7 cut(s)	210, 1804, 1953, 2685, 3115, 3331, 3803
BspANI	GGCC	7 cut(s)	63, 1567, 1987, 2531, 2753, 2774, 3920
BspEI	TCCGGA	1 cut(s)	2302
BspFNI	CGCG	2 cut(s)	3732, 3883
BspHI	TCATGA	4 cut(s)	1104, 1945, 2316, 2709
BspLI	GGNNCC	9 cut(s)	756, 778, 1058, 1873, 2174, 2642, 3060, 3426, 3435
BspMAI	CTGCAG	3 cut(s)	2623, 2850, 3157
BspMI	ACCTGC	1 cut(s)	2853
BspPI	GGATC	4 cut(s)	539, 1199, 2992, 3844
BspQI	GCTCTTC	1 cut(s)	809
BspT104I	TTCGAA	2 cut(s)	589, 1927
BspT107I	GGYRCC	4 cut(s)	754, 1056, 2172, 2640
BspTNI	GGTCTC	4 cut(s)	1405, 1943, 2721, 2834
BsrBI	CCGCTC	1 cut(s)	1955
BsrDI	GCAATG	6 cut(s)	168, 1728, 1794, 2642, 3414, 3551
BsrFI	RCCGGY	1 cut(s)	2714
BsrGI	TGTACA	1 cut(s)	2584
BsrI	ACTGG	3 cut(s)	967, 1122, 3792
BssAI	RCCGGY	1 cut(s)	2714
BssECI	CCNNGG	6 cut(s)	2748, 2811, 3054, 3429, 3633, 3959
BssHII	GCGCGC	2 cut(s)	3730, 3881
BssNI	GRCGYC	2 cut(s)	2173, 2641
BssSI	CACGAG	1 cut(s)	3482
BssT1I	CCWWGG	2 cut(s)	2748, 3959
Bst2BI	CACGAG	1 cut(s)	3482
Bst2UI	CCWGG	8 cut(s)	560, 1209, 2512, 2959, 3056, 3431, 3634, 3917
Bst6I	CTCTTC	4 cut(s)	809, 2384, 3349, 3960
BstACI	GRCGYC	2 cut(s)	2173, 2641
BstAPI	GCANNNNNTGC	3 cut(s)	1766, 2924, 3692
BstAUI	TGTACA	1 cut(s)	2584
BstBI	TTCGAA	2 cut(s)	589, 1927
BstC8I	GCNNGC	9 cut(s)	1521, 2066, 2142, 2157, 2529, 2614, 3265, 3732, 3883
BstF5I	GGATG	2 cut(s)	501, 1312
BstFNI	CGCG	2 cut(s)	3732, 3883
BstH2I	RGCGCY	2 cut(s)	2176, 2644
BstHHI	GCGC	9 cut(s)	317, 1151, 2175, 2643, 3686, 3732, 3734, 3883, 3885
BstMAI	GTCTC	8 cut(s)	1405, 1943, 2102, 2559, 2721, 2834, 3038, 3405
BstMCI	CGRYCG	1 cut(s)	2047
BstNI	CCWGG	8 cut(s)	560, 1209, 2512, 2959, 3056, 3431, 3634, 3917
BstNSI	RCATGY	2 cut(s)	2747, 3197
BstPAI	GACNNNNGTC	1 cut(s)	3484
BstSCI	CCNGG	9 cut(s)	558, 1207, 2510, 2957, 3054, 3429, 3632, 3864, 3915
BstSFI	CTRYAG	5 cut(s)	849, 861, 2619, 2846, 3153
BstSLI	GKGCMC	2 cut(s)	759, 3259
BstUI	CGCG	2 cut(s)	3732, 3883
BstV2I	GAAGAC	2 cut(s)	1000, 2659
BstX2I	RGATCY	1 cut(s)	3707
BstXI	CCANNNNNNTGG	5 cut(s)	950, 1363, 2765, 3757, 3923
BstYI	RGATCY	1 cut(s)	3707
Bsu36I	CCTNAGG	2 cut(s)	228, 1432
BsuI	GTATCC	1 cut(s)	3219
BsuRI	GGCC	7 cut(s)	63, 1567, 1987, 2531, 2753, 2774, 3920
BtsCI	GGATG	2 cut(s)	501, 1312
BtsI	GCAGTG	8 cut(s)	44, 633, 714, 756, 1381, 2466, 2616, 3162
BveI	ACCTGC	1 cut(s)	2853
Cac8I	GCNNGC	9 cut(s)	1521, 2066, 2142, 2157, 2529, 2614, 3265, 3732, 3883
CaiI	CAGNNNCTG	2 cut(s)	3161, 3494
CciI	TCATGA	4 cut(s)	1104, 1945, 2316, 2709
CfoI	GCGC	9 cut(s)	317, 1151, 2175, 2643, 3686, 3732, 3734, 3883, 3885
Cfr10I	RCCGGY	1 cut(s)	2714
Cfr13I	GGNCC	7 cut(s)	501, 634, 1216, 2305, 2530, 3013, 3287
CseI	GACGC	3 cut(s)	650, 2849, 2916
Csp6I	GTAC	7 cut(s)	439, 538, 889, 1841, 2338, 2585, 3326
CspAI	ACCGGT	1 cut(s)	2714
CviQI	GTAC	7 cut(s)	439, 538, 889, 1841, 2338, 2585, 3326
DinI	GGCGCC	2 cut(s)	2174, 2642
Eam1104I	CTCTTC	4 cut(s)	809, 2384, 3349, 3960
EarI	CTCTTC	4 cut(s)	809, 2384, 3349, 3960
Ecl136II	GAGCTC	3 cut(s)	171, 3106, 3309
Eco130I	CCWWGG	2 cut(s)	2748, 3959
Eco147I	AGGCCT	3 cut(s)	63, 1567, 1987
Eco24I	GRGCYC	3 cut(s)	173, 3108, 3311
Eco31I	GGTCTC	4 cut(s)	1405, 1943, 2721, 2834
Eco47I	GGWCC	6 cut(s)	501, 634, 1216, 2305, 3013, 3287
Eco53kI	GAGCTC	3 cut(s)	171, 3106, 3309
Eco57I	CTGAAG	1 cut(s)	3933
Eco81I	CCTNAGG	2 cut(s)	228, 1432
Eco88I	CYCGRG	2 cut(s)	2722, 3258
EcoICRI	GAGCTC	3 cut(s)	171, 3106, 3309
EcoRI	GAATTC	1 cut(s)	3591
EcoRII	CCWGG	8 cut(s)	558, 1207, 2510, 2957, 3054, 3429, 3632, 3915
EcoT14I	CCWWGG	2 cut(s)	2748, 3959
EcoT22I	ATGCAT	2 cut(s)	436, 2212
EcoT38I	GRGCYC	3 cut(s)	173, 3108, 3311
EgeI	GGCGCC	2 cut(s)	2174, 2642
EheI	GGCGCC	2 cut(s)	2174, 2642
ErhI	CCWWGG	2 cut(s)	2748, 3959
FalI	AAGNNNNNCTT	6 cut(s)	813, 845, 1815, 1847, 2129, 2161
FaqI	GGGAC	1 cut(s)	996
FauNDI	CATATG	1 cut(s)	2266
FbaI	TGATCA	2 cut(s)	2319, 2488
FblI	GTMKAC	2 cut(s)	2292, 3198
FokI	GGATG	2 cut(s)	508, 1319
FriOI	GRGCYC	3 cut(s)	173, 3108, 3311
GlaI	GCGC	9 cut(s)	316, 1150, 2174, 2642, 3685, 3731, 3733, 3882, 3884
GsaI	CCCAGC	2 cut(s)	1739, 2769
GsuI	CTGGAG	4 cut(s)	1707, 1829, 3624, 3746
HaeII	RGCGCY	2 cut(s)	2176, 2644
HaeIII	GGCC	7 cut(s)	63, 1567, 1987, 2531, 2753, 2774, 3920
HapII	CCGG	5 cut(s)	504, 1343, 2303, 2715, 3866
HgaI	GACGC	3 cut(s)	650, 2849, 2916
HhaI	GCGC	9 cut(s)	317, 1151, 2175, 2643, 3686, 3732, 3734, 3883, 3885
Hin1I	GRCGYC	2 cut(s)	2173, 2641
Hin6I	GCGC	9 cut(s)	315, 1149, 2173, 2641, 3684, 3730, 3732, 3881, 3883
HinP1I	GCGC	9 cut(s)	315, 1149, 2173, 2641, 3684, 3730, 3732, 3881, 3883
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	2 cut(s)	947, 2138
HpaII	CCGG	5 cut(s)	504, 1343, 2303, 2715, 3866
HphI	GGTGA	6 cut(s)	230, 1057, 1793, 2007, 2043, 2449
Hpy166II	GTNNAC	5 cut(s)	373, 501, 1115, 2293, 3199
Hpy8I	GTNNAC	5 cut(s)	373, 501, 1115, 2293, 3199
Hpy99I	CGWCG	1 cut(s)	2865
HpyCH4IV	ACGT	3 cut(s)	288, 891, 3572
HpySE526I	ACGT	3 cut(s)	288, 891, 3572
Hsp92I	GRCGYC	2 cut(s)	2173, 2641
HspAI	GCGC	9 cut(s)	315, 1149, 2173, 2641, 3684, 3730, 3732, 3881, 3883
KasI	GGCGCC	2 cut(s)	2172, 2640
Kpn2I	TCCGGA	1 cut(s)	2302
Ksp22I	TGATCA	2 cut(s)	2319, 2488
LguI	GCTCTTC	1 cut(s)	809
LweI	GCATC	8 cut(s)	402, 613, 1561, 2098, 2527, 3136, 3682, 3941
MaeII	ACGT	3 cut(s)	288, 891, 3572
MaeIII	GTNAC	5 cut(s)	3, 73, 739, 953, 1252
MbiI	CCGCTC	1 cut(s)	1955
MfeI	CAATTG	3 cut(s)	2223, 2559, 3753
MflI	RGATCY	1 cut(s)	3707
MhlI	GDGCHC	6 cut(s)	173, 759, 910, 3108, 3259, 3311
Mly113I	GGCGCC	2 cut(s)	2173, 2641
MlyI	GAGTC	6 cut(s)	206, 736, 1769, 3265, 3494, 3707
MmeI	TCCRAC	2 cut(s)	473, 2865
Mph1103I	ATGCAT	2 cut(s)	436, 2212
MroI	TCCGGA	1 cut(s)	2302
MroXI	GAANNNNTTC	3 cut(s)	1858, 2035, 2705
MseI	TTAA	7 cut(s)	1478, 1542, 1728, 2331, 2351, 3072, 3189
MslI	CAYNNNNRTG	4 cut(s)	719, 1928, 3419, 3755
MspA1I	CMGCKG	4 cut(s)	210, 1175, 2369, 3331
MspI	CCGG	5 cut(s)	504, 1343, 2303, 2715, 3866
MspR9I	CCNGG	9 cut(s)	560, 1209, 2512, 2959, 3056, 3431, 3634, 3866, 3917
MunI	CAATTG	3 cut(s)	2223, 2559, 3753
Mva1269I	GAATGC	2 cut(s)	1935, 2801
MvaI	CCWGG	8 cut(s)	560, 1209, 2512, 2959, 3056, 3431, 3634, 3917
MvnI	CGCG	2 cut(s)	3732, 3883
NarI	GGCGCC	2 cut(s)	2173, 2641
NciI	CCSGG	1 cut(s)	3866
NdeI	CATATG	1 cut(s)	2266
NlaIV	GGNNCC	9 cut(s)	756, 778, 1058, 1873, 2174, 2642, 3060, 3426, 3435
NmeAIII	GCCGAG	1 cut(s)	3721
NmuCI	GTSAC	3 cut(s)	3, 73, 739
NsiI	ATGCAT	2 cut(s)	436, 2212
NspI	RCATGY	2 cut(s)	2747, 3197
NspV	TTCGAA	2 cut(s)	589, 1927
OliI	CACNNNNGTG	2 cut(s)	719, 3755
PagI	TCATGA	4 cut(s)	1104, 1945, 2316, 2709
PauI	GCGCGC	2 cut(s)	3730, 3881
PceI	AGGCCT	3 cut(s)	63, 1567, 1987
PciSI	GCTCTTC	1 cut(s)	809
PcsI	WCGNNNNNNNCGW	1 cut(s)	648
PctI	GAATGC	2 cut(s)	1935, 2801
PdmI	GAANNNNTTC	3 cut(s)	1858, 2035, 2705
PfeI	GAWTC	9 cut(s)	11, 267, 485, 699, 899, 1229, 1247, 2851, 2976
Pfl23II	CGTACG	1 cut(s)	888
PinAI	ACCGGT	1 cut(s)	2714
PleI	GAGTC	6 cut(s)	205, 736, 1769, 3265, 3493, 3706
PluTI	GGCGCC	2 cut(s)	2176, 2644
PpsI	GAGTC	6 cut(s)	205, 736, 1769, 3265, 3493, 3706
PshAI	GACNNNNGTC	1 cut(s)	3484
PshBI	ATTAAT	1 cut(s)	2331
Psp124BI	GAGCTC	3 cut(s)	173, 3108, 3311
Psp1406I	AACGTT	1 cut(s)	3572
Psp6I	CCWGG	8 cut(s)	558, 1207, 2510, 2957, 3054, 3429, 3632, 3915
PspFI	CCCAGC	2 cut(s)	1735, 2765
PspGI	CCWGG	8 cut(s)	558, 1207, 2510, 2957, 3054, 3429, 3632, 3915
PspLI	CGTACG	1 cut(s)	888
PspN4I	GGNNCC	9 cut(s)	756, 778, 1058, 1873, 2174, 2642, 3060, 3426, 3435
PspPI	GGNCC	7 cut(s)	501, 634, 1216, 2305, 2530, 3013, 3287
PstI	CTGCAG	3 cut(s)	2623, 2850, 3157
PstNI	CAGNNNCTG	2 cut(s)	3161, 3494
PsuI	RGATCY	1 cut(s)	3707
PteI	GCGCGC	2 cut(s)	3730, 3881
PvuII	CAGCTG	2 cut(s)	1175, 2369
RsaI	GTAC	7 cut(s)	440, 539, 890, 1842, 2339, 2586, 3327
RsaNI	GTAC	7 cut(s)	439, 538, 889, 1841, 2338, 2585, 3326
RseI	CAYNNNNRTG	4 cut(s)	719, 1928, 3419, 3755
SacI	GAGCTC	3 cut(s)	173, 3108, 3311
SapI	GCTCTTC	1 cut(s)	809
SaqAI	TTAA	7 cut(s)	1478, 1542, 1728, 2331, 2351, 3072, 3189
Sau96I	GGNCC	7 cut(s)	501, 634, 1216, 2305, 2530, 3013, 3287
ScaI	AGTACT	1 cut(s)	2339
SchI	GAGTC	6 cut(s)	206, 736, 1769, 3265, 3494, 3707
ScrFI	CCNGG	9 cut(s)	560, 1209, 2512, 2959, 3056, 3431, 3634, 3866, 3917
SduI	GDGCHC	6 cut(s)	173, 759, 910, 3108, 3259, 3311
SfaNI	GCATC	8 cut(s)	402, 613, 1561, 2098, 2527, 3136, 3682, 3941
SfcI	CTRYAG	5 cut(s)	849, 861, 2619, 2846, 3153
SfoI	GGCGCC	2 cut(s)	2174, 2642
SfuI	TTCGAA	2 cut(s)	589, 1927
SinI	GGWCC	6 cut(s)	501, 634, 1216, 2305, 3013, 3287
SmiMI	CAYNNNNRTG	4 cut(s)	719, 1928, 3419, 3755
SmlI	CTYRAG	3 cut(s)	65, 156, 3395
SmoI	CTYRAG	3 cut(s)	65, 156, 3395
SpeI	ACTAGT	1 cut(s)	1261
SseBI	AGGCCT	3 cut(s)	63, 1567, 1987
SsiI	CCGC	7 cut(s)	210, 1804, 1953, 2685, 3115, 3331, 3803
SspDI	GGCGCC	2 cut(s)	2172, 2640
SspI	AATATT	1 cut(s)	3469
SstI	GAGCTC	3 cut(s)	173, 3108, 3311
StuI	AGGCCT	3 cut(s)	63, 1567, 1987
StyD4I	CCNGG	9 cut(s)	558, 1207, 2510, 2957, 3054, 3429, 3632, 3864, 3915
StyI	CCWWGG	2 cut(s)	2748, 3959
TaiI	ACGT	3 cut(s)	291, 894, 3575
TaqII	GACCGA	2 cut(s)	1090, 1233
TatI	WGTACW	5 cut(s)	438, 1840, 2337, 2584, 3325
TauI	GCSGC	1 cut(s)	2687
TfiI	GAWTC	9 cut(s)	11, 267, 485, 699, 899, 1229, 1247, 2851, 2976
Tru1I	TTAA	7 cut(s)	1478, 1542, 1728, 2331, 2351, 3072, 3189
Tru9I	TTAA	7 cut(s)	1478, 1542, 1728, 2331, 2351, 3072, 3189
TseFI	GTSAC	3 cut(s)	3, 73, 739
Tsp45I	GTSAC	3 cut(s)	3, 73, 739
TspGWI	ACGGA	1 cut(s)	3242
VpaK11BI	GGWCC	6 cut(s)	501, 634, 1216, 2305, 3013, 3287
VspI	ATTAAT	1 cut(s)	2331
XapI	RAATTY	3 cut(s)	870, 2032, 3591
XbaI	TCTAGA	1 cut(s)	2131
XceI	RCATGY	2 cut(s)	2747, 3197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1067
XmiI	GTMKAC	2 cut(s)	2292, 3198
XmnI	GAANNNNTTC	3 cut(s)	1858, 2035, 2705
ZrmI	AGTACT	1 cut(s)	2339
Zsp2I	ATGCAT	2 cut(s)	436, 2212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.