Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001181.1

Orthogroup ID

OG0012181

Physical Location & Seq

Genomic Coordinates Reverse (-)

3698 .. 4435

Gene Structure 738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggcctcattttggacgccacatttgatcaaatccaaagaagaagacagtcatggtccaaccaacactggtattttcggtctctaccttgacgaactcgatgaggcatggacaagccaagttgaggactttgattacctcattatttccggagggcattggttcatgcgatccatggtgttccatgaaaataacaaaatctcaggttgtcactattgcctcctagacaatgtgcctgacttgggaatgttctacggctacagaaaggcgtttaggacagcttttaaggccatcaacagcttgaaaaattacaagggtataacgtaccttaggacttttgcaccatcacattttgagaatgggatgtggaacaaaggagggaattgtgtgagaacgaagccgtttaggagcaatgagacccaattggagggtgccagtttggagttttacatgattcaattagaggagtttaggactgctgagaaggaagggagaaagaaggggttaaaatataggttattggacacaacacaagccacgttactaaggccagatggtcatcctagtagatatgggcattggccagaggaaaatgtgactttgtataatgactgtgtgcattggtgcttgccaggacctattgatacttggggtgatttcttgcttgagatgttgaagatggagggtatcagatcagctgaggagaagcgctattcaagagatagaagaatgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

245

Amino Acids

28.68

Weight (kDa)

6.56

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	3 - 224	8.4e-65	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15900 AT5G15900
fragaria_vesca	FvH4_6g45640
malus_domestica	MD09G1081000.v1.1 MD17G1072200.v1.1
prunus_persica	Prupe.3G242500_v2.0.a1
pyrus_communis	pycom09g00740 pycom17g07170
rosa_chinensis	RchiOBHm_Chr2g0163781
rosa_laevigata	RLG00000021416
rosa_multiflora	Rmu_sc0001181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087030 Rroxscaffold_2G00087050
rosa_rugosa	Rorug02G0504600
rosa_samantha	Rh2AG572500 Rh2BG583100 Rh2CG554000 Rh2DG592800
rosa_wichuraiana	Rw2G047320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccIII	TCCGGA	1 cut(s)	149
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	1 cut(s)	326
AfeI	AGCGCT	1 cut(s)	710
AfiI	CCNNNNNNNGG	4 cut(s)	12, 124, 242, 427
AgsI	TTSAA	4 cut(s)	304, 458, 676, 717
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	3 cut(s)	281, 300, 698
AluI	AGCT	3 cut(s)	281, 300, 698
Alw26I	GTCTC	2 cut(s)	86, 410
AlwI	GGATC	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	149
Aor51HI	AGCGCT	1 cut(s)	710
AoxI	GGCC	4 cut(s)	3, 288, 548, 581
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
AspLEI	GCGC	1 cut(s)	711
AspS9I	GGNCC	2 cut(s)	56, 635
AsuHPI	GGTGA	1 cut(s)	665
AvaII	GGWCC	2 cut(s)	56, 635
AxyI	CCTNAGG	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	699
BccI	CCATC	4 cut(s)	299, 352, 548, 673
BceAI	ACGGC	2 cut(s)	271, 385
BciT130I	CCWGG	1 cut(s)	633
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	86, 410
BfaI	CTAG	2 cut(s)	224, 564
BfmI	CTRYAG	1 cut(s)	259
BfoI	RGCGCY	1 cut(s)	712
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	2 cut(s)	56, 635
BmgT120I	GGNCC	2 cut(s)	56, 635
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	686
BsaBI	GATNNNNATC	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	2 cut(s)	86, 410
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 124, 242, 427
Bse1I	ACTGG	2 cut(s)	73, 435
Bse21I	CCTNAGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	418
Bse8I	GATNNNNATC	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	369, 559
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	4 cut(s)	12, 124, 242, 427
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	3 cut(s)	216, 471, 690
BseNI	ACTGG	2 cut(s)	73, 435
BseRI	GAGGAG	2 cut(s)	479, 716
BshFI	GGCC	4 cut(s)	5, 290, 550, 583
BshNI	GGYRCC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	4 cut(s)	12, 124, 242, 427
BsmAI	GTCTC	2 cut(s)	86, 410
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	4 cut(s)	5, 290, 550, 583
Bso31I	GGTCTC	2 cut(s)	86, 410
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	27, 170, 692
Bsp19I	CCATGG	1 cut(s)	174
BspANI	GGCC	4 cut(s)	5, 290, 550, 583
BspCNI	CTCAG	3 cut(s)	215, 472, 691
BspEI	TCCGGA	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	86, 410
BsrDI	GCAATG	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	73, 435
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	3 cut(s)	27, 170, 692
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	2 cut(s)	50, 614
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	629
BstDEI	CTNAG	5 cut(s)	202, 329, 480, 545, 699
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	369, 559
BstH2I	RGCGCY	1 cut(s)	712
BstHHI	GCGC	1 cut(s)	711
BstKTI	GATC	3 cut(s)	30, 173, 695
BstMAI	GTCTC	2 cut(s)	86, 410
BstMBI	GATC	3 cut(s)	27, 170, 692
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	5, 290, 550, 583
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	369, 559
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	629
CfoI	GCGC	1 cut(s)	711
Cfr13I	GGNCC	2 cut(s)	56, 635
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	6 cut(s)	53, 108, 166, 175, 185, 451
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	5 cut(s)	202, 329, 480, 545, 699
DpnI	GATC	3 cut(s)	29, 172, 694
DpnII	GATC	3 cut(s)	27, 170, 692
EaeI	YGGCCR	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	2 cut(s)	86, 410
Eco47I	GGWCC	2 cut(s)	56, 635
Eco47III	AGCGCT	1 cut(s)	710
Eco81I	CCTNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	6 cut(s)	56, 111, 169, 178, 188, 454
FatI	CATG	6 cut(s)	52, 107, 165, 174, 184, 450
FbaI	TGATCA	1 cut(s)	27
FokI	GGATG	2 cut(s)	376, 546
FspBI	CTAG	2 cut(s)	224, 564
GlaI	GCGC	1 cut(s)	710
HaeII	RGCGCY	1 cut(s)	712
HaeIII	GGCC	4 cut(s)	5, 290, 550, 583
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	711
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	6 cut(s)	56, 111, 169, 178, 188, 454
Hin6I	GCGC	1 cut(s)	709
HinP1I	GCGC	1 cut(s)	709
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	665
Hpy188I	TCNGA	1 cut(s)	692
Hpy188III	TCNNGA	2 cut(s)	150, 717
HpyAV	CCTTC	3 cut(s)	478, 482, 493
HpyCH4III	ACNGT	2 cut(s)	50, 614
HpyCH4IV	ACGT	2 cut(s)	323, 539
HpyCH4V	TGCA	3 cut(s)	341, 619, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	5 cut(s)	202, 329, 480, 545, 699
HpySE526I	ACGT	2 cut(s)	323, 539
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	6 cut(s)	56, 111, 169, 178, 188, 454
HspAI	GCGC	1 cut(s)	709
Kpn2I	TCCGGA	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	27, 170, 692
LmnI	GCTCC	1 cut(s)	408
LpnPI	CCDG	9 cut(s)	54, 163, 189, 249, 448, 564, 597, 618, 645
MaeI	CTAG	2 cut(s)	224, 564
MaeII	ACGT	2 cut(s)	323, 539
MaeIII	GTNAC	3 cut(s)	209, 540, 595
MalI	GATC	3 cut(s)	29, 172, 694
MboI	GATC	3 cut(s)	27, 170, 692
MboII	GAAGA	4 cut(s)	53, 56, 688, 738
MfeI	CAATTG	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	583
MluCI	AATT	4 cut(s)	307, 382, 422, 458
MluNI	TGGCCA	1 cut(s)	583
MmeI	TCCRAC	1 cut(s)	83
Mox20I	TGGCCA	1 cut(s)	583
Mph1103I	ATGCAT	1 cut(s)	735
MroI	TCCGGA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	583
MseI	TTAA	2 cut(s)	285, 506
Msp20I	TGGCCA	1 cut(s)	583
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	633
MunI	CAATTG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	735
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	3 cut(s)	27, 170, 692
NlaIII	CATG	6 cut(s)	56, 111, 169, 178, 188, 454
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	2 cut(s)	209, 595
NsiI	ATGCAT	1 cut(s)	735
PctI	GAATGC	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	2 cut(s)	56, 635
PspPPI	RGGWCCY	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	285, 506
Sau3AI	GATC	3 cut(s)	27, 170, 692
Sau96I	GGNCC	2 cut(s)	56, 635
ScrFI	CCNGG	1 cut(s)	633
SfcI	CTRYAG	1 cut(s)	259
SinI	GGWCC	2 cut(s)	56, 635
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
Sse9I	AATT	4 cut(s)	307, 382, 422, 458
SspMI	CTAG	2 cut(s)	224, 564
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	50, 614
TaiI	ACGT	2 cut(s)	326, 542
TaqI	TCGA	1 cut(s)	99
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	4 cut(s)	307, 382, 422, 458
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	2 cut(s)	285, 506
Tru9I	TTAA	2 cut(s)	285, 506
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	2 cut(s)	209, 595
Tsp45I	GTSAC	2 cut(s)	209, 595
TspDTI	ATGAA	2 cut(s)	154, 201
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	56, 635
XspI	CTAG	2 cut(s)	224, 564
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.